Robert J. Kremer

Evaluation of microbial methods as potential indicators of soil quality in historical agricultural fields

In agricultural ecosystems that have had consistent cropping histories, standard microbial methods may be used to evaluate past and present practices. Our objective was to evaluate several microbial methods that best indicate cropping histories and soil quality on long-term plots. We selected soil microbial carbon (C), phospholipid analyses, direct counts of total fungal and bacterial biomass, and soil enzymes (phosphatases) to measure direct and indirect microbial activity on the Sanborn Field and Tucker Prairie. The Sanborn Field has been under various cropping and management practices since 1888 and the Tucker Prairie is an uncultivated site. Seven different plots were chosen on the Sanborn Field and random samples were taken in the summit area on the Tucker Prairie, which represented a reference site. Soil microbial biomass C, phospholipids, and enzyme activity were reflective of the cropping and management histories observed on the Sanborn Field. Enzymatic activity was highly correlated to soil organic matter. The direct counts of fungal and bacterial biomass showed that fungal populations dominated these soils, which may be attributed to soil pH. Soil microbial biomass C and enzyme assays seemed to be better potential indicators of cropping histories than the other methods tested in the long-term plots.

Glyphosate affects soybean root exudation and rhizosphere micro-organisms

Glyphosate is a non-selective, broad-spectrum herbicide that kills plants by inhibiting the enzyme 5-enolpyruvylshikimic acid-3-phosphate synthase (EPSPS), which is necessary for synthesis of aromatic amino acids. A secondary mode of action involves infection of roots of glyphosate-susceptible plants by soil-borne micro-organisms due to decreased production of plant protection compounds known as phytoalexins. Varieties of several crops, including glyphosate-resistant (GR) or Roundup Ready soybean, are genetically modified to resist the herbicidal effects of glyphosate and provide farmers with an effective weed-management tool. After glyphosate is applied to GR soybean, glyphosate that is not bound to glyphosate-resistant EPSPS is translocated throughout the plant and accumulates primarily in meristematic tissues. We previously reported that fungal colonization of GR soybean roots increased significantly after application of glyphosate but not after conventional postemergence herbicides. Because glyphosate may be released into soil from GR roots, we characterized the response of rhizosphere fungi and bacteria to root exudates from GR and non-GR (Williams 82; W82) cultivars treated with and without glyphosate at field application rates. Using an immunoassay technique, glyphosate at concentrations >1000 ng plant-1 were detected in exudates of hydroponically grown GR soybean at 16 days post-glyphosate application. Glyphosate also increased carbohydrate and amino acid contents in root exudates in both soybean cultivars. However, GR soybean released higher carbohydrate and amino acid contents in root exudates than W82 soybean without glyphosate treatment. In vitro bioassays showed that glyphosate in the exudates stimulated growth of selected rhizosphere fungi, possibly by providing a selective C and N source combined with the high levels of soluble carbohydrates and amino acids associated with glyphosate treatment of the soybean plants. Increased fungal populations that develop under glyphosate treatment of GR soybean may adversely affect plant growth and biological processes in the soil and rhizosphere.

Cyanide production by rhizobacteria and potential for suppression of weed seedling growth

Rhizobacteria strains were characterized for ability to synthesize hydrogen cyanide and for effects on seedling root growth of various plants. Approximately 32% of bacteria from a collection of over 2000 isolates were cyanogenic, evolving HCN from trace concentrations to >30 nmoles/mg cellular protein. Cyanogenesis was predominantly associated with pseudomonads and was enhanced when glycine was provided in the culture medium. Concentrations of HCN produced by rhizobacteria were similar to exogenous concentrations inhibiting seedling growth in bioassays, suggesting that cyanogenesis by rhizobacteria in the rhizosphere can adversely affect plant growth. Growth inhibition of lettuce and barnyardgrass by volatile metabolites of the cyanogenic rhizobacteria confirmed that HCN was the major inhibitory compound produced. Our results suggest that HCN produced in the rhizospheres of seedlings by selected rhizobacteria is a potential and environmentally compatible mechanism for biological control of weeds.

Developing weed-suppressive soils through improved soil quality management

Manipulating soil microbial communities using soil and crop management practices is a basic strategy in developing sustainable agricultural systems. Sustainable farming is based, in part, on the efficient management of soil microorganisms to improve soil quality. However, the identification of biological indicators of soil quality that can be used to predict weed suppression in soils has received little attention. We investigated differences in soil microbial activity among various crop and soil management systems to assess: (i) the microbiological characteristics of these soils; (ii) determine whether any relationships existed that might be used in the development of weed suppression. Soil enzyme activity, water-stable aggregates, and the proportions of weed-suppressive bacteria were compared among seven cropping systems and one native-prairie ecosystem in mid-Missouri, USA. Assays of soil enzymes (fluorescein diacetate hydrolase, dehydrogenase, phosphatase) revealed that organic and integrated cropping systems, and the native-prairie ecosystem had the highest levels of soil activity. Weed rhizospheres from these same ecosystems also had greater proportions of bacterial isolates characterized as “growth suppressive” to green foxtail (Setaria viridis [L.] Beauv.) and field bindweed (Convolvulus arvensis L.): 15 and 10%, respectively. The proportion of water-stable soil aggregates was the greatest in soils with the highest organic matter and was found to be related to higher enzyme and weed-suppressive activity. Selected biological indicators of soil quality were associated with potential weed-suppressive activity in soil when that soil was managed for high organic matter content under reduced tillage systems. This research study provides further evidence that soil quality and sustainable agricultural practices may be linked to integrated weed management systems for the biological suppression of weeds.

Enhanced suppression of plant growth through production of L-tryptophan-derived compounds by deleterious rhizobacteria

Plant-growth-suppressive activity of deleterious rhizobacteria (DRB) may be due to production of metabolites absorbed through roots. Auxins produced in high concentrations in the rhizosphere by DRB contribute to reduced root growth. Selected DRB able to produce excessive amounts of auxin compounds for suppression of weed seedling growth may be effective for biological control of weeds. The objectives to this study were to assess the ability of DRB originating from weed seedlings to synthesize auxins from L-tryptophan (L-TRP), determine effects of DRB with or without L-TRP on seedling root growth, and characterize auxins produced from L-TRP using high performance liquid chromatography (HPLC). Auxins expressed as indole-3-acetic acid (IAA)-equivalents were produced by 22.8% of the DRB tested based on a colorimetric method. Under laboratory conditions, a DRB isolate classified as Enterobacter taylorae with high auxin-producing potential (72 mg L−1 IAA-equivalents) inhibited root growth of field bindweed (Convolvulus arvensis L.) by 90.5% when combined with 10−5M L-TRP compared with non-treated control. Auxin derivatives produced by E. taylorae from L-TRP in broth culture after 24 h incubation identified by HPLC included IAA (102 μg L−1), indole-3-aldehyde (IALD; 0.4 μg L−1), and indole-3-lactic acid (ILA; 7.6 μg L−1). Results suggest that providing L-TRP with selected auxin-producing DRB to increase phytotoxic activity against emerging weed seedlings may be a practical biological control strategy.

A chemical basis for differential allelopathic potential of sorghum hybrids on wheat

The basis for differential allelopathic potentials among sorghum (Sorghum bicolor L. Moench) hybrids was investigated by conducting quantitative and qualitative studies of their phenolic contents. Total phenolic content in sorghum plant parts varied within hybrids, among hybrids, and between growing seasons. Inhibition of wheat (Triticum aestivum L.) radicle growth was positively associated (r=0.66) with concentrations of total phenolics contained in plant parts. Extracts from culms contributed the higherst proportion of toxicity from sorghum plants, inhibiting radicle growth up to 74.7%. Concentrations of five phenolic acids,p-hydroxybenzoic (POH), vanillic (VAN), syringic (SYR),p-coumaric (PCO), and ferulic (FER), differed in all plant parts of the three sorghum hybrids. Concentrations of POH, VAN, and SYR were consistently higher than PCO and FER. PCO and FER wer absent from some plant parts, with FER being the most frequently missing. Inhibition of wheat radicle growth was found to be positively associated with the concentration of each phenolic acid. Vanillic acid was most highly associated (r=0.44) with inhition. Thus, above-ground sorghum tissues contained phenolic acids that contributed to allelopathic potential. Additionally, sorghum roots exuded POH, VAN, and SYR that may enhance the overall allelopathic potential of sorghum during growth and after harvest when residues remain on the soil surface or are incorporated prior to planting a subsquent crop.

Bacterial diversity in rhizospheres of nontransgenic and transgenic corn.

ABSTRACT Bacterial diversity in transgenic and nontransgenic corn rhizospheres was determined. In greenhouse and field studies, metabolic profiling and molecular analysis of 16S rRNAs differentiated bacterial communities among soil textures but not between corn varieties. We conclude that bacteria in corn rhizospheres are affected more by soil texture than by cultivation of transgenic varieties.

Differences in yields, residue composition and N mineralization dynamics of Bt and non-Bt maize

Cultivation of genetically modified crops may have several direct and indirect effects on soil ecosystem processes, such as soil nitrogen (N) transformations. Field studies were initiated in Northeast Missouri in 2002 and 2003 to determine grain and biomass yields and the effects of application of crop residues from five Bt maize hybrids and their respective non-Bt isolines on soil inorganic N under tilled and no-till conditions in a maize-soybean rotation. A separate aerobic incubation study examined soil N mineralization from residue components (leaves, stems, roots) of one Bt maize hybrid and its non-Bt isoline in soils of varying soil textural class. Three Bt maize hybrids produced 13–23% greater grain yields than the non-Bt isolines. Generally no differences in leaf and stem tissues composition and biomass was observed between Bt and non-Bt maize varieties. Additionally, no differences were observed in cumulative N mineralization from Bt and non-Bt maize residues, except for non-Bt maize roots that mineralized 2.7 times more N than Bt maize roots in silt loam soil. Incorporation of Bt residues in the field did not significantly affect soil inorganic N under tilled or no-till conditions. Overall Bt and non-Bt maize residues did not differ in their effect on N dynamics in laboratory and field studies.

Glyphosate affects micro-organisms in rhizospheres of glyphosate-resistant soybeans

Aims:  Glyphosate‐resistant (GR) soybean production increases each year because of the efficacy of glyphosate for weed management. A new or ‘second’ generation of GR soybean (GR2) is now commercially available for farmers that is being promoted as higher yielding relative to the previous, ‘first generation’ (GR1) cultivars. Recent reports show that glyphosate affects the biology and ecology of rhizosphere micro‐organisms in GR soybean that affect yield. The objective of this research was to evaluate the microbiological interactions in the rhizospheres of GR2 and GR1 soybean and the performance of the cultivars with different rates of glyphosate applied at different growth stages.

Identity and properties of bacteria inhabiting seeds of selected broadleaf weed species

Seeds of five weed species were examined for the presence of seedborne bacteria. A total of 459 isolates were obtained from 1,740 seeds. The bacteria were identified and examined for distribution among seed viability classes, antifungal activity, and potential phytopathogenicity. Weed seeds varied for the prevalence of bacteria and in the types of bacteria associated with each plant species. Antifungal activity exhibited by 80% of the bacteria may limit seed deterioration by potential fungal seed pathogens. Some of the seedborne bacteria (15%) were potentially phytopathogenic. It is suggested that the complex nature of the weed seed-bacteria associations may be an obstacle to the development of biotic agents for manipulating weed seed activity in soil.