Roedhy Poerwanto

De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit.

Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw data obtained in this study can be accessible in DDBJ database with accession number of DRA005014 with bioproject accession number of PRJDB5091. We obtained 268,851 transcripts as well as 155,850 unigenes, having N50 value of 555 and 433 bp, respectively. Transcript/unigene length ranged from 201 to 5916 bp. The unigenes were annotated with two main databases from NCBI and UniProtKB, respectively having annotated-sequences of 73,287 and 73,107, respectively. These transcriptomic data will be beneficial for studying transcriptome of Garcinia mangostana L.

Perubahan Kandungan Giberelin dan Gula Total pada Fase-Fase Perkembangan Bunga Manggis

The objectives of this experiment were to study the changes of gibberellic acid and total sugar content in flower developmental stages of mangosteen. The result showed that flower development of mangosteen consisted of four stages: induction, differentiation, maturition of flower organs, and anthesis. Floral induction was microscopically characterized by the swelling of the basal structure of the new shoot. It was found that induction stage of mangosteen flowering was characterized by sharp decrease of gibberellic acid (GA3, GA5, GA7) and increase of total sugar content of leaf. On the other hand, it was found that leaf of the non-flowering shoot apices had high gibbrellic acid and low total sugar.

Changes of Gibberellin and Total Sugar Content in Flower Developmental Stages of Mangosteen

Both Lumbricus rubellus and Pseudomonas putida decompose soil organic matters. The population of P. putida Pf-20 increased if L. rubellus was introduced to the cucumber growth medium. The process of organic decomposition was much better if the medium was introduced with both L. rubellus and P. putida Pf-20, compared to the medium contained only either one of those organisms. The activity of L. rubellus may serve to provide nutrients for both the cucumber and P. putida. The role of P. putida to reduce disease severity was increased if L. rubellus was introduced to the growth medium. The synergism of these two organisms, reduced either the level of disease severity to CMV-48 and C/N ratio of medium, but increased the content of available phosphor and potassium. Key words: Lumbricus rubellus, Pseudomonas putida Pf-20, disease severity of CMV

Analysis of Allelic Diversity and Genetic Relationships Among Cultivated Mangosteen (Garcinia mangostana L.) in Java, Indonesia Using Microsatellite Markers and Morphological Characters

The genetic variation and relationships of the mangosteen (Garcinia mangostana L.) were observed across mangosteen populations in Java, Indonesia using newly identified microsatellite loci and morphological characters. In this study, we developed an improved protocol to isolate microsatellite loci, named Selective Repeats from AFLP Sequence, by using a hybridized membrane. Twenty microsatellite loci were evaluated using 78 individuals from five mangosteen populations, and we successfully amplified four closely related Garcinia species, including G. malaccensis, G. hombroniana, G. celebica, and G. porrecta. Eight loci were monomorphic and the others were polymorphic. Sixty-nine alleles were found, with 3.491 per locus on an average. Genetic diversity (Hʹ) was calculated with an average across loci within population (HʹS) as 0.39, an average loci across many populations (HʹT) as 0.444, and genetic differentiation (FʹST) as 0.147. Furthermore, based on morphological characters, mangosteen individuals from four populations including Leuwiliang, Wanayasa, Puspahiang, and Kaligesing also had morphologically distinct fruit weight, rind weight, and rind thickness among populations. The study also elucidated the dispersal pattern of mangosteen in Java; the source of the genotype mangosteen in Java population was the Wanayasa population. In addition, we found evidence of tetraploidy in mangosteen. These results have potential applications in future breeding, conservation studies, and genetic assessment of mangosteen and their closely related species.

Aktivitas Kitinase dan Peroksidase dari Ekstrak Kasar Protein Asal Kalus dan Berbagai Jaringan Tanaman Trichosanthes cucumerina var. anguina

Chitinase and peroxydase are important bioactive proteins or are specific enzymes that are related to plant resistance to pathogens. The aims of the research were to analyze the chitinase and peroxidase activities of crude protein extract from calli, stem, leaves and roots of T. cucumerinavar. anguina. In the first experiment, chitinase and peroxydase activities were analyzed from in vitro calli, leaves and roots obtained from 2-month-old of field grown plants. The media for calli induction were Murashige and Skoog medium with addition of 1 µM NAA + 1 µM BA, 2 µM NAA + 2 µM BA, 3 µM NAA + 3 µM BA, or 4 µM NAA + 4 µM BA. In the second experiment, the chitinase and peroxydase activities from crude protein extract of roots, stems and leaves were analyzed. The extracts were from 3-week-old seedling (less than a month), 1-month and 2-month-old plants. The first and the second experiment results showed that crude protein extracts of plant roots from the field grown plants had the highest chitinase and peroxidase activities. Stem of field grown plants had the similar level of chitinase activities with the plant roots. Chitinase activities of in vitro calli were not significantly different from those of plant roots so that it could be used as an alternative for plant roots in studying chitinase from T. cucumerinavar. anguina. Chitinase activities in crude protein extracts of roots appeared constant whereas peroxidase tend to increase with plant age. Keywords: calli, enzyme activities, leaves, roots, stem

Peanut Cultivar Differences in Yield Based on Source and Sink Characteristics

This research was conducted to determine peanut cultivar differences in sink and source sizes as represented by vegetative growth and yields. Two sets of experiments were conducted at Bogor Agricultural University farms, Sawah Baru and Cikarawang (06 o 33’, S, 106 o 45’E, 250 m altitude). Planting was conducted on June 12 and June 20, 2007 using 20 local and national cultivars in each location. Both experiments used randomized complete block design with three replications. Data were analyzed using correlation and regression analysis. Size of experimental unit was 1.6 m x 4.0 m, with planting density 125,000 plants ha -1 . Urea, SP36 and KCl were applied at planting date in the rate of (kg ha -1 ) 45 N, 100 P 2 O5 and 50 K 2 O. Four stages of plant growth were studied: 25 days after planting (DAP); 6 weeks after planting (WAP); 10 WAP (pod filling) and 14 WAP (harvest). Five plants were sampled at 25 DAP, two plants at 6 WAP, 10 WAP and 14 WAP, and separated into leaves, stems, roots and pods. The average yield of two experimental stations showed that Biawak cultivar had the highest yield due to relatively higher aboveground dry weight (source), pod filling percentage and maximum number of gynophor+pods (potential sink). Jepara cultivar had the lowest yield due to low pod filling percentage and potential sink, although its source was considered to be in the medium category. Above ground dry weight at 6 and 10 WAP had close relation with Crop Growth Rate (CGR) during 25 DAP-6 WAP and 6-10 WAP, and the higher CGR during those periods were more related to leaf area index than to single leaf photosynthetic capacity. Keywords: crop growth rate, pod filling percentage, leaf area index, single leaf photosynthetic capacity