Roger D. Boyle

Canopy application of film antitranspirants over the reproductive phase enhances yield and yield-related physiological traits of water-stressed oilseed rape (Brassica napus)

Abstract. Oilseed rape (Brassica napus L.) yield is strongly decreased by water deficit, and crop-management solutions are urgently required considering the emerging difficulties in breeding for drought-tolerant varieties. Film-forming antitranspirants (polymers) are agrochemicals that, applied to the crop canopy, mechanically block the stomata and decrease canopy transpiration. In this study, the drought-protection efficacy of an adaxial-surface application at the flowering stage of two film-forming treatments (poly-1-p-menthene and di-1-p-menthene) was investigated in pot-grown, droughted oilseed rape over two glasshouse experiments. Over the drought period, the two compounds reduced leaf stomatal conductance (P < 0.001), and as the soil moisture deficit increased, they sustained carbon assimilation and improved water-use efficiency with differing efficacy. Following the antitranspirant treatments, ABA concentration in leaves and reproductive organs was severely reduced and this was accompanied by significant improvements in leaf and flower–pod water potential. Drought significantly decreased the seed dry matter production of oilseed rape plants, by 39% on average. The treatments significantly increased seed dry matter by 13% (poly-1-p-menthene) and 17% (di-1-p-menthene), on average, compared with the unsprayed droughted plants, as a result of a significant increase in number of pods per plant, by 11% and 13%, respectively. The results suggest that film-forming compounds may be a useful crop-management tool to avoid severe drought-induced yield losses in oilseed rape by improving water-use efficiency and plant water status, thus alleviating ABA signalling under water deficit.

Image-based estimation of oat panicle development using local texture patterns

Flowering time varies between and within species, profoundly influencing reproductive fitness in wild plants and productivity in crop plants. The time of flowering, therefore, is an important statistic that is regularly collected as part of breeding programs and phenotyping experiments to facilitate comparison of genotypes and treatments. Its automatic detection would be highly desirable. We present significant progress on an approach to this problem in oats (Avena sativa L.), an underdeveloped cereal crop of increasing importance. Making use of the many thousands of images of oat plants we have available, spanning different genotypes and treatments, we observe that during flowering, panicles (the flowering structures) betray particular intensity patterns that give an identifiable texture that is distinctive and discriminatory with respect to the main plant body and can be used to determine the time of flowering. This texture can be located by a filter, trained as a form of local pattern. This training phase identifies the best parameters of such a filter, which usefully discovers the scale of the panicle spikelets. The results demonstrate the success of the filter. We proceed to suggest and evaluate an approach to using the filter as a growth stage detector. Preliminary results show very good correspondence with hand-measured ground truth, and are amenable to improvement in several ways. Future work will build on this initial success and will go on to locate fully mature panicles, which have a different appearance, and assess whether this approach can be extended to a broader range of plants.

Automated estimation of tiller number in wheat by ribbon detection

The advent of high-throughput phenotyping installations signals a need for plant biology to use pattern analysis and recognition techniques, especially when analysis is done via digital images. Such installations also provide an opportunity to computer vision. We describe one such application at the UK National Plant Phenomics Centre, in which historically measurements have been made in a labour-intensive manual manner. We develop an estimator of tiller number in growing wheat which, when exploiting per-day averaging, temporal interpolation and dynamic programming, delivers measurements of finer-grain and no less accuracy than manually, and provides observations on plant treatments hitherto difficult or impossible to obtain. The approach developed lends itself to reuse for any similar imaging setup, and plants with tillering characteristics similar to wheat. We consider the work a useful exemplar for co-operation between biologists and computer scientists in such installations.

Investigation into diagnostic accuracy of common strategies for automated perfusion motion correction.

Abstract. Respiratory motion is a significant obstacle to the use of quantitative perfusion in clinical practice. Increasingly complex motion correction algorithms are being developed to correct for respiratory motion. However, the impact of these improvements on the final diagnosis of ischemic heart disease has not been evaluated. The aim of this study was to compare the performance of four automated correction methods in terms of their impact on diagnostic accuracy. Three strategies for motion correction were used: (1) independent translation correction for all slices, (2) translation correction for the basal slice with transform propagation to the remaining two slices assuming identical motion in the remaining slices, and (3) rigid correction (translation and rotation) for the basal slice. There were no significant differences in diagnostic accuracy between the manual and automatic motion-corrected datasets (p=0.88). The area under the curve values for manual motion correction and automatic motion correction were 0.93 and 0.92, respectively. All of the automated motion correction methods achieved a comparable diagnostic accuracy to manual correction. This suggests that the simplest automated motion correction method (method 2 with translation transform for basal location and transform propagation to the remaining slices) is a sufficiently complex motion correction method for use in quantitative myocardial perfusion.

Turi: chatbot software for schools in the Turing centenary

We describe a workshop designed for 11-19 year-olds that considers the nature of intelligence and introduces the Turing test in various ways. Chatbots as mimics of intelligence are considered at length. Pupils are invited to use our system Turi in which they can build and test their own chatbot. The materials are free, open source and available for all to download [1].

Root imaging showing comparisons in root distribution and ontogeny in novel Festulolium populations and closely related perennial ryegrass varieties

Abstract The incorporation of new sophisticated phenotyping technologies within a crop improvement program allows for a plant breeding strategy that can include selections for major root traits previously inaccessible due to the challenges in their phenotype assessment. High‐throughput precision phenotyping technology is employed to evaluate root ontogeny and progressive changes to root architecture of both novel amphiploid and introgression lines of Festulolium over four consecutive months of the growing season and these compared under the same time frame to that of closely related perennial ryegrass (L. perenne) varieties. Root imaging using conventional photography and assembled multiple merged images was used to compare frequencies in root number, their distribution within 0–20 and 20–40 cm depths within soil columns, and progressive changes over time. The Festulolium hybrids had more extensive root systems in comparison with L. perenne, and this was especially evident at depth. It was shown that the acquisition of extensive root systems in Festulolium hybrids was not dependent on the presence of an entire Festuca genome. On the contrary, the most pronounced effect on root development within the four Festulolium populations studied was observed in the introgression line Bx509, where a single small genome sequence from F. arundinacea had been previously transferred onto its homoeologous site on the long arm of chromosome 3 of an otherwise complete L. perenne genome. This demonstrates that a targeted introgression‐breeding approach may be sufficient to confer a significant improvement in the root morphology in Lolium without a significant compromise to its genome integrity. The forage production of Bx509 was either higher (months 1–3) or equivalent to (month 4) that of its L. perenne parent control demonstrating that the enhanced root development achieved by the introgression line was without compromise to its agronomic performance.

Patient-specific coronary blood supply territories for quantitative perfusion analysis

Abstract Myocardial perfusion imaging, coupled with quantitative perfusion analysis, provides an important diagnostic tool for the identification of ischaemic heart disease caused by coronary stenoses. The accurate mapping between coronary anatomy and under-perfused areas of the myocardium is important for diagnosis and treatment. However, in the absence of the actual coronary anatomy during the reporting of perfusion images, areas of ischaemia are allocated to a coronary territory based on a population-derived 17-segment (American Heart Association) AHA model of coronary blood supply. This work presents a solution for the fusion of 2D Magnetic Resonance (MR) myocardial perfusion images and 3D MR angiography data with the aim to improve the detection of ischaemic heart disease. The key contribution of this work is a novel method for the mediated spatiotemporal registration of perfusion and angiography data and a novel method for the calculation of patient-specific coronary supply territories. The registration method uses 4D cardiac MR cine series spanning the complete cardiac cycle in order to overcome the under-constrained nature of non-rigid slice-to-volume perfusion-to-angiography registration. This is achieved by separating out the deformable registration problem and solving it through phase-to-phase registration of the cine series. The use of patient-specific blood supply territories in quantitative perfusion analysis (instead of the population-based model of coronary blood supply) has the potential of increasing the accuracy of perfusion analysis. Quantitative perfusion analysis diagnostic accuracy evaluation with patient-specific territories against the AHA model demonstrates the value of the mediated spatiotemporal registration in the context of ischaemic heart disease diagnosis.