Rui J.M. Rocha

Development and validation of a simple thermo-desorption technique for mercury speciation in soils and sediments

An innovative technique for rapid identification and quantification of mercury (Hg) species in soils and sediments was developed using a direct mercury analyser. Speciation was performed by the continuous thermal-desorption of mercury species (temperature range 76-770 °C), in combination with atomic absorption spectrophotometry detection. Standard materials HgCl(2), Hg bound to humic acids and HgS were characterized; thermo-desorption curves of each material showed a well-resolved peak at specific temperature intervals: 125-225 °C, 100-250 °C and 225-325 °C, respectively. Certified reference materials (CRM) BCR(®) 142R, RTC(®) CRM 021, NRC(®) MESS-3 and PACS-2 were tested. Although the CRM were not certified for Hg species, the sum of Hg species obtained was compared to the certified value for total Hg; recoveries were 92%, 100%, 97%, and 95%, respectively. One sediment and three soil samples from mercury contaminated areas (total Hg concentrations 0.067-126 mg kg(-1)) were analysed as well. It was possible to compare peaks of thermo-desorption curves from the samples with those from standard materials and thereby distinguish different Hg species in solid samples. Generally, Hg was present as bound to chloride or humic substances. The precision was satisfactory, as reflected by the relative standard deviations determined for standards and certified reference materials (<11%; n=10).

Marine microorganism-invertebrate assemblages: perspectives to solve the "supply problem" in the initial steps of drug discovery.

The chemical diversity associated with marine natural products (MNP) is unanimously acknowledged as the “blue gold” in the urgent quest for new drugs. Consequently, a significant increase in the discovery of MNP published in the literature has been observed in the past decades, particularly from marine invertebrates. However, it remains unclear whether target metabolites originate from the marine invertebrates themselves or from their microbial symbionts. This issue underlines critical challenges associated with the lack of biomass required to supply the early stages of the drug discovery pipeline. The present review discusses potential solutions for such challenges, with particular emphasis on innovative approaches to culture invertebrate holobionts (microorganism-invertebrate assemblages) through in toto aquaculture, together with methods for the discovery and initial production of bioactive compounds from these microbial symbionts.

Unraveling the interactive effects of climate change and oil contamination on laboratory-simulated estuarine benthic communities.

There is growing concern that modifications to the global environment such as ocean acidification and increased ultraviolet radiation may interact with anthropogenic pollutants to adversely affect the future marine environment. Despite this, little is known about the nature of the potential risks posed by such interactions. Here, we performed a multifactorial microcosm experiment to assess the impact of ocean acidification, ultraviolet B (UV-B) radiation and oil hydrocarbon contamination on sediment chemistry, the microbial community (composition and function) and biochemical marker response of selected indicator species. We found that increased ocean acidification and oil contamination in the absence of UV-B will significantly alter bacterial composition by, among other things, greatly reducing the relative abundance of Desulfobacterales, known to be important oil hydrocarbon degraders. Along with changes in bacterial composition, we identified concomitant shifts in the composition of oil hydrocarbons in the sediment and an increase in oxidative stress effects on our indicator species. Interestingly, our study identifies UV-B as a critical component in the interaction between these factors, as its presence alleviates harmful effects caused by the combination of reduced pH and oil pollution. The model system used here shows that the interactive effect of reduced pH and oil contamination can adversely affect the structure and functioning of sediment benthic communities, with the potential to exacerbate the toxicity of oil hydrocarbons in marine ecosystems.

Excreted thiocyanate detects live reef fishes illegally collected using cyanide--a non-invasive and non-destructive testing approach.

Cyanide fishing is a method employed to capture marine fish alive on coral reefs. They are shipped to markets for human consumption in Southeast Asia, as well as to supply the marine aquarium trade worldwide. Although several techniques can be used to detect cyanide in reef fish, there is still no testing method that can be used to survey the whole supply chain. Most methods for cyanide detection are time-consuming and require the sacrifice of the sampled fish. Thiocyanate anion (SCN−) is a metabolite produced by the main metabolic pathway for cyanide anion (CN−) detoxification. Our study employed an optical fiber (OF) methodology (analytical time <6 min) to detect SCN− in a non-invasive and non-destructive manner. Our OF methodology is able to detect trace levels (>3.16 µg L−1) of SCN− in seawater. Given that marine fish exposed to cyanide excrete SCN− in the urine, elevated levels of SCN− present in the seawater holding live reef fish indicate that the surveyed specimens were likely exposed to cyanide. In our study, captive-bred clownfish (Amphiprion clarkii) pulse exposed for 60 s to either 12.5 or 25 mg L−1 of CN− excreted up to 6.96±0.03 and 9.84±0.03 µg L−1 of SCN−, respectively, during the 28 days following exposure. No detectable levels of SCN− were recorded in the water holding control organisms not exposed to CN−, or in synthetic seawater lacking fish. While further research is necessary, our methodology can allow a rapid detection of SCN− in the holding water and can be used as a screening tool to indicate if live reef fish were collected with cyanide.

Effects of elevated temperature and CO2 on intertidal microphytobenthos

BackgroundMicrophytobenthos (MPB) are the main primary producers of many intertidal and shallow subtidal environments. Although these coastal ecosystems are particularly vulnerable to anthropogenic activities, little is known on the effects of climate change variables on the structure and productivity of MPB communities. In this study, the effects of elevated temperature and CO2 on intertidal MPB biomass, species composition and photosynthetic performance were studied using a flow-through experimental life support system.ResultsElevated temperature had a detrimental effect on MPB biomass and photosynthetic performance under both control and elevated CO2. Furthermore, elevated temperature led to an increase of cyanobacteria and a change in the relative abundance of major benthic diatom species present in the MPB community. The most abundant motile epipelic species Navicula spartinetensis and Gyrosigma acuminatum were in part replaced by tychoplanktonic species (Minidiscus chilensis and Thalassiosira cf. pseudonana) and the motile epipelic Nitzschia cf. aequorea and N. cf. aurariae. Elevated CO2 had a beneficial effect on MPB biomass, but only at the lower temperature. It is possible that elevated CO2 alleviated local depletion of dissolved inorganic carbon resulting from high cell abundance at the sediment photic layer. No significant effect of elevated CO2 was detected on the relative abundance of major groups of microalgae and benthic diatom species.ConclusionsThe interactive effects of elevated temperature and CO2 may have an overall detrimental impact on the structure and productivity of intertidal MPB, and eventually in related ecosystem services.

Preliminary evaluation of the toxic effects of the antifouling biocide Sea-Nine 211™ in the soft coral Sarcophyton cf. glaucum (Octocorallia, Alcyonacea) based on PAM fluorometry and biomarkers

Sea-Nine 211™ is a new biocide specifically formulated for antifouling paints and being considered to have a low environmental impact. Even with a short environmental half-life, this compound can cause toxic effects on marine organisms. This study used PAM fluorometry and biomarkers of oxidative stress (GST, CAT and LPO) to monitor potential toxic effects of Sea-Nine 211™ on fragments of the soft coral Sarcophyton cf. glaucum. After exposure to concentrations of 1-100 μg l(-1) for 72 h, CAT activity was inhibited under the two highest concentrations, being in accordance with the activity of GST. LPO activity (as TBARS) and photosynthetic efficiency of endosymbiotic zooxanthellae were not significantly affected. These results show that PAM fluorometry alone cannot detect the full effects of Sea-Nine 211™ on Sarcophyton cf. glaucum and should be used together with other biomarkers. This holobiont driven approach to evaluate chemical toxicity in photosynthetic corals is therefore recommended for biocides which are not photosystem II inhibitors.

Contrasting Light Spectra Constrain the Macro and Microstructures of Scleractinian Corals

The morphological plasticity of scleractinian corals can be influenced by numerous factors in their natural environment. However, it is difficult to identify in situ the relative influence of a single biotic or abiotic factor, due to potential interactions between them. Light is considered as a major factor affecting coral skeleton morphology, due to their symbiotic relation with photosynthetic zooxanthellae. Nonetheless, most studies addressing the importance of light on coral morphological plasticity have focused on photosynthetically active radiation (PAR) intensity, with the effect of light spectra remaining largely unknown. The present study evaluated how different light spectra affect the skeleton macro- and microstructures in two coral species (Acropora formosa sensu Veron (2000) and Stylophora pistillata) maintained under controlled laboratory conditions. We tested the effect of three light treatments with the same PAR but with a distinct spectral emission: 1) T5 fluorescent lamps with blue emission; 2) Light Emitting Diodes (LED) with predominantly blue emission; and 3) Light Emitting Plasma (LEP) with full spectra emission. To exclude potential bias generated by genetic variability, the experiment was performed with clonal fragments for both species. After 6 months of experiment, it was possible to detect in coral fragments of both species exposed to different light spectra significant differences in morphometry (e.g., distance among corallites, corallite diameter, and theca thickness), as well as in the organization of their skeleton microstructure. The variability found in the skeleton macro- and microstructures of clonal organisms points to the potential pitfalls associated with the exclusive use of morphometry on coral taxonomy. Moreover, the identification of a single factor influencing the morphology of coral skeletons is relevant for coral aquaculture and can allow the optimization of reef restoration efforts.

Photobiology of the zoanthid Zoanthus sociatus in intertidal and subtidal habitats

Intertidal environments are boundaries between marine and terrestrial ecosystems that are subject to rapid fluctuations across tidal cycles. This study investigates, for the first time, the photobiology of symbiotic zoanthids inhabiting different tidal environments: subtidal, intertidal pools and intertidal areas exposed to air during low tide. More specifically, we assessed the photochemical efficiency, Symbiodinium density and photosynthetic pigments profile of Zoanthus sociatus during low tide. Photochemical efficiency was lower and cell density higher in air exposed zoanthids. The profile of photosynthetic pigments also varied significantly among tidal habitats, particularly photoprotective pigments such as dinoxanthin and diadinoxanthin. Differences were also observed for the pigment content per cell, but the proportion of particular pigments (peridinin/chlorophyll-a and diatoxanthin+diadinoxanthin/chlorophyll-a) remained stable. Results suggest that aerial exposure conditions induce reversible downregulation of photochemical processes but no photophysiological impairment or bleaching. These findings provide a baseline for future studies addressing the prevalence of these overlooked cnidarians in environmentally dynamic reef flats.

Application of bacteriophages during depuration reduces the load of Salmonella Typhimurium in cockles

As bivalve molluscs are filter feeder, often consumed raw or lightly cooked and are frequently cultivated in contaminated waters, they are implicated in food-borne disease transmission to human. The present study investigated the potential application of bacteriophage (or phage) phSE-2, phage phSE-5 and phage cocktail phSE-2/phSE-5 to decrease the concentration of Salmonella enterica serovar Typhimurium (Salmonella Typhimurium) during the depuration of natural and artificially contaminated cockles (Cerastoderma edule). Cockles were artificially infected with 105 and 106colony-forming units (CFU)/mL of S. Typhimurium in static seawater and infected group were treated with phages at four different MOI values: 0.1, 1, 10 and 100. Depuration in static seawater at multiplicity of infection (MOI) of 0.1 with single phage suspensions of phSE-2 and phSE-5 provided the best results, as it decreased by ~1.3 and 1.7 logCFU/g, respectively, the concentration of Salmonella spp. after a 4h treatment. At a MOI of 0.1, the rate of inactivation with single phage suspensions was higher when compared with the results obtained using the phage cocktail. However, in naturally contaminated cockles treated in static seawater with single phage suspensions and phage cocktail phSE-2/phSE-5, similar decreases in cultivable bacteria concentration (~0.7-0.9 logCFU/g) were achieved after 6h of treatment. When artificially contaminated cockles were depurated with phage phSE-5 in a recirculated seawater system (mimicking industrial depuration conditions), a 0.9 and 2.0 logCFU/g reduction of Salmonella spp. was reached after 4 and 6h treatment. Once the depuration process was performed without phage, a 6h treatment was needed to obtain a 1.1 logCFU/g reduction of Salmonella spp. Results indicated that combining phage biocontrol with depuration procedures enhance bivalve microbial safety for human consumption by improving decontamination efficiency, proving that this technology can be transposed to the bivalves industry. Moreover, this approach also displays the advantage of reducing the time required for depuration and consequently its associated costs.

Effects of UV filter 4-methylbenzylidene camphor during early development of Solea senegalensis Kaup, 1858

The inclusion of organic UV filters in personal care products (PCPs) has increased in recent years. 4-Methylbenzylidene camphor (4MBC) is one of the most used UV filters, and thus it is commonly found in aquatic ecosystems, with proved negative effects on aquatic organisms. Effects on early life stages of marine vertebrates are largely unknown. Therefore, the main goal of this work was to evaluate 4MBC effects on Senegalese sole (Solea Senegalensis Kaup, 1858) larvae at different levels of biological organization. S. senegalensis were exposed to increasing concentrations of 4MBC from egg stage until 96 h. Mortality, growth, malformations, behaviour and biochemical responses, including enzymatic biomarkers were studied. The exposure to 4MBC until 96 h post-fertilization (hpf) induced mortality and malformations in a dose-response manner. Besides, reduced growth with increasing concentrations was observed. The exposure to 4MBC also caused alterations on behaviour, including overall lower swimming time during light and dark periods. Biomarker alterations caused by 4MBC included imbalance of neurotransmission related endpoints (increased acetylcholinesterase activity) and decreased activity of enzymes related to anaerobic metabolism (lower cellular lactate dehydrogenase activity) at the lower concentrations tested. Furthermore, our results suggest that 4MBC do not induce oxidative stress in S. senegalensis larvae, since catalase and lipid peroxidation levels were not significantly altered by 4MBC. S. senegalensis revealed to be a good model species for vertebrate animal testing in the marine environment. Sub-lethal concentrations of 4MBC induced toxic effects at all organizational levels. Swimming behaviour was a sensitive endpoint and showed that exposure to 4MBC causes impairment on response to light stimulus which is possibly linked with the observed imbalances on cholinesterase activity in larvae. Conservation concerns along distribution range of S. senegalensis should consider that increasing levels of UV filters in marine environment might have impact on the ecology of the species.