Rutika Kokate
University of North Texas Health Science Center
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Publication
Featured researches published by Rutika Kokate.
PLOS ONE | 2013
Badri P. Maliwal; Rafal Fudala; Sangram Raut; Rutika Kokate; Thomas Just Sørensen; Bo W. Laursen; Zygmunt Gryczynski; Ignacy Gryczynski
The fluorescence lifetimes of most red emitting organic probes are under 4 nanoseconds, which is a limiting factor in studying interactions and conformational dynamics of macromolecules. In addition, the nanosecond background autofluorescence is a significant interference during fluorescence measurements in cellular environment. Therefore, red fluorophores with longer lifetimes will be immensely helpful. Azaoxa-triangulenium fluorophores ADOTA and DAOTA are red emitting small organic molecules with high quantum yield, long fluorescence lifetime and high limiting anisotropy. In aqueous environment, ADOTA and DAOTA absorption and emission maxima are respectively 540 nm and 556 nm, and 556 nm and 589 nm. Their emission extends beyond 700 nm. Both probes have the limiting anisotropy between 0.36–0.38 at their absorption peak. In both protic and aprotic solvents, their lifetimes are around 20 ns, making them among the longest-lived red emitting organic fluorophores. Upon labeling of avidin, streptavidin and immunoglobulin their absorption and fluorescence are red-shifted. Unlike in free form, the protein-conjugated probes have heterogeneous fluorescence decays, with the presence of both significantly quenched and unquenched populations. Despite the presence of significant local motions due to a flexible trimethylene linker, we successfully measured both intermediate nanosecond intra-protein motions and slower rotational correlation times approaching 100 ns. Their long lifetimes are unaffected by the cell membrane (hexadecyl-ADOTA) and the intra-cellular (DAOTA-Arginine) localization. Their long lifetimes also enabled successful time-gating of the cellular autofluorescence resulting in background-free fluorescence lifetime based images. ADOTA and DAOTA retain a long fluorescence lifetime when free, as protein conjugate, in membranes and inside the cell. Our successful measurements of intermediate nanosecond internal motions and long correlations times of large proteins suggest that these probes will be highly useful to study slower intra-molecular motions and interactions among macromolecules. The fluorescence lifetime facilitated gating of cellular nanosecond autofluorescence should be of considerable help in in vitro and in vivo applications.
Current Pharmaceutical Biotechnology | 2014
Sangram Raut; Ryan Rich; Rafal Fudala; Rutika Kokate; Joseph D. Kimball; Julian Borejdo; Jamboor K. Vishwanatha; Zygmunt Gryczynski; Ignacy Gryczynski
Although BSA Au clusters fluoresce in red region (λmax: 650 nm), they are of limited use due to low fluorescence quantum yield (~6%). Here we report an enhanced fluorescence imaging application of fluorescent bio-nano probe BSA Au clusters using multipulse excitation scheme. Multipulse excitation takes advantage of long fluorescence lifetime (> 1 µs) of BSA Au clusters and enhances its fluorescence intensity 15 times over short lived cellular auto-fluorescence. Moreover we have also shown that by using time gated detection strategy signal (fluorescence of BSA Au clusters) to noise (auto-fluorescence) ratio can be increased by 30 fold. Thereby with multipulse excitation long lifetime probes can be used to develop biochemical assays and perform optical imaging with zero background.
Cancer Research | 2013
Rutika Kokate; Sanjay Thamake; Harlan P. Jones; Jamboor K. Vishwanatha; Brittany Mott
Short description: Immunotherapy represents a potential and innovative means to combat cancer. It essentially harnesses the body9s immune system to fight against cancer. Previous literature suggests that cancer vaccines designed against a specific tumor antigen have been efficiently utilized to trigger immune responses against tumor cells. Despite the preliminary evidence in animal models, low immunogenicity is one of the major hurdles in the development of vaccines in humans. In order to surmount this obstacle, several approaches including the use of an “ideal” tumor antigen, appropriate delivery techniques, immune boosting strategies with co-stimulatory molecules are being explored. Purpose: The purpose of this study was to develop “bacteriomimetic nanoparticles” to enhance adaptive cell-mediated immune responses (CD4 + and CD8 + T cell responses) against tumor antigen as a therapeutic option for cancer treatment. Materials and Methods: NPs were prepared by modified solid/oil/water solvent evaporation method using an ultrasonic processor UP200H system (Hielscher Ultrasonics GmbH, Germany). We used membrane preparations of the 4T1 mouse mammary cancer cell line as a tumor antigen and CpG ODN9s as a “bactriomimetic” stimulant. Fourteen days before tumor challenge BALB/c female mice (6-8 weeks) were pre-immunized with CpG followed by secondary immunization using respective NPs encapsulated with the membrane antigen preparation. Subsequently, mice (n=4) were challenged with 10 5 tumor cells intravenously (IV). Mice were sacrificed and tumors were harvested at days 3, 7 and 14 respectively. CD4 + and CD8 + T cell responses were measured in lower respiratory node and spleen using flow cytometry. In another experimental set, following the same immunization schedule as mentioned above, mice (n=5) were challenged subcutaneously (SC) with 10 5 tumor cells. Primary tumor size was monitored using vernier caliper and bioluminiscence imaging (Caliper Life Sciences Inc., MA, USA). Mice were sacrificed on day sixteen after tumor challenge; spleen cells were used for flow cytometric analysis and primary tumor tissue was used to evaluate CD4 + and CD8 + T cell via immunohistochemistry. Results: We found significant reduction in progression of tumor growth in mice immunized with CpG coated NPs containing tumor antigen (CpG-NP-Tag). Cytometry analysis demonstrated increased CD4 + (helper) and CD8 + (cytotoxic) T cell response emphasizing enhanced immunogenicity against cancer cells. IHC data indicated greater CD4+ T cell infiltration of the tumor tissue for the animals immunized with CpG-NP-Tag. Conclusions: Primary tumor size, IHC and flow cytometry analysis indicate that CpG-NP-Tag NPs were successfully employed to boost the immune response against tumor cells. Citation Format: Rutika Kokate, Sanjay Thamake, Harlan Jones, Jamboor Vishwanatha, Brittany Mott. Mimicking infection for immunotherapy against breast cancer - fooling the immune system. [abstract]. In: Proceedings of the 104th Annual Meeting of the American Association for Cancer Research; 2013 Apr 6-10; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2013;73(8 Suppl):Abstract nr 1270. doi:10.1158/1538-7445.AM2013-1270
Nanoscale | 2014
Sangram Raut; Ryan Rich; Rafal Fudala; Susan Butler; Rutika Kokate; Zygmunt Gryczynski; Rafal Luchowski; Ignacy Gryczynski
Nanoscale | 2014
Sangram Raut; Rafal Fudala; Ryan Rich; Rutika Kokate; Rahul Chib; Zygmunt Gryczynski; Ignacy Gryczynski
Nanomedicine: Nanotechnology, Biology and Medicine | 2016
Rutika Kokate; Pankaj Chaudhary; Xiangle Sun; Sanjay Thamake; Sayantan Maji; Rahul Chib; Jamboor K. Vishwanatha; Harlan P. Jones
Indian Journal of Experimental Biology | 2011
Sushil Kumar; Rutika Kokate; Mukesh Sahu; Pankaj Chaudhary; Sanjay Awasthi; Yogesh C. Awasthi
Nanomedicine: Nanotechnology, Biology and Medicine | 2015
Rutika Kokate; Sanjay Thamake; Pankaj Chaudhary; Brittney Mott; Sangram Raut; Jamboor K. Vishwanatha; Harlan P. Jones
Archive | 2015
Rutika Kokate; Sanjay Thamake; Pankaj Chaudhary; Sangram Raut; Brittney Mott; Jamboor K. Vishwanatha
Archive | 2014
Rutika Kokate; Sanjay Thamake; Pankaj Chaudhary; Brittney Mott; Jamboor K. Vishwanatha; Harlan P. Jones