S. P. Miller

Genetic parameters and breed differences for feed efficiency, growth, and body composition traits of young beef bulls

Genetic associations between feed efficiency, growth, and live ultrasound measured body composition traits were studied in purebred beef bulls of six breeds in Ontario bull test stations from 1991 to 2000. Feed traits included average daily feed intake (FI), feed conversion ratio (FCR), and residual feed intake [feed intake adjusted for production alone (RFIp) or production and backfat thickness (RFIb)]. Growth traits were average daily weight gain (ADG), mid-test metabolic weight (MW), hip height (HH), and scrotal circumference (SC). Body composition traits included ultrasound backfat thickness (BF), longissimus muscle area (LMA), and predicted percentage of intramuscular fat (IFAT). Bulls were measured every 28 d for weight and individual feed intake, and at the end of test for ultrasound body composition traits. Number of records per trait ranged from 2284 (FI) to 13 319 (ADG). Fixed effects of test group, breed and end of test age (within breed), and random effects of animal and herd of origin were mo...

Reducing GHG emissions through genetic improvement for feed efficiency: effects on economically important traits and enteric methane production

Genetic selection for residual feed intake (RFI) is an indirect approach for reducing enteric methane (CH4) emissions in beef and dairy cattle. RFI is moderately heritable (0.26 to 0.43), moderately repeatable across diets (0.33 to 0.67) and independent of body size and production, and when adjusted for off-test ultrasound backfat thickness (RFIfat) is also independent of body fatness in growing animals. It is highly dependent on accurate measurement of individual animal feed intake. Within-animal repeatability of feed intake is moderate (0.29 to 0.49) with distinctive diurnal patterns associated with cattle type, diet and genotype, necessitating the recording of feed intake for at least 35 days. In addition, direct measurement of enteric CH4 production will likely be more variable and expensive than measuring feed intake and if conducted should be expressed as CH4 production (g/animal per day) adjusted for body size, growth, body composition and dry matter intake (DMI) or as residual CH4 production. A further disadvantage of a direct CH4 phenotype is that the relationships of enteric CH4 production on other economically important traits are largely unknown. Selection for low RFIfat (efficient, −RFIfat) will result in cattle that consume less dry matter (DMI) and have an improved feed conversion ratio (FCR) compared with high RFIfat cattle (inefficient; +RFIfat). Few antagonistic effects have been reported for the relationships of RFIfat on carcass and meat quality, fertility, cow lifetime productivity and adaptability to stress or extensive grazing conditions. Low RFIfat cattle also produce 15% to 25% less enteric CH4 than +RFIfat cattle, since DMI is positively related to enteric methane (CH4) production. In addition, lower DMI and feeding duration and frequency, and a different rumen bacterial profile that improves rumen fermentation in −RFIfat cattle may favor a 1% to 2% improvement in dry matter and CP digestibility compared with +RFIfat cattle. Rate of genetic change using this approach is expected to improve feed efficiency and reduce enteric CH4 emissions from cattle by 0.75% to 1.0% per year at equal levels of body size, growth and body fatness compared with cattle not selected for RFIfat.

Relationships among measures of growth performance and efficiency with carcass traits, visceral organ mass, and pancreatic digestive enzymes in feedlot cattle

Ninety-three crossbred steer calves (BW+/-SD=385+/-50 kg) were used (n=48 steers in yr 1, n=45 steers in yr 2) to examine the relationship among carcass traits, lean, bone, and fat proportions, visceral tissue weights, and pancreatic digestive enzyme activity with DMI, ADG, G:F, and residual feed intake. Calves were progeny from crossbred dams predominantly of Angus and Simmental breeding and were sired by Angus, Simmental, crossbred (predominantly of Angus and Simmental breeding), Charolais, or Piedmontese bulls. Steers were fed a high-moisture corn-based diet for an average of 112 d. Partial correlation analysis accounting for year, pen within year, week of slaughter within year, and sire breed was conducted. Gain:feed was negatively correlated (P <or= 0.04) with backfat thickness (r= -0.38), marbling score (r= -0.32), and trim and kidney fat weight proportion (g/kg of BW; r= -0.42). Residual feed intake (P=0.008; g/kg of BW; r=0.34) and backfat-corrected residual feed intake (P=0.005; r=0.29) were positively correlated with trim and kidney fat weight proportion. Gain:feed was negatively correlated (P<0.001) with total fat weight proportion (g/kg of rib; r= -0.45) and positively correlated (P <or= 0.03) with lean weight proportion (g/kg of rib; r=0.30) and bone weight proportion (g/kg of rib; r=0.28). Gain:feed was negatively correlated (P <or= 0.01) with subcutaneous fat weight proportion (g/kg of rib; r= -0.32) and intramuscular fat weight proportion (g/ kg of rib; r=0.37). Gain:feed was negatively correlated (P<0.001) with total visceral weight proportion (g/kg of BW; r= -0.44) and visceral fat weight proportion (g/kg of BW; r= -0.41) but was positively correlated (P=0.02) with spleen weight proportion (g/kg of BW; r=0.30). There were no significant correlations (P>0.10) between performance measures and the pancreatic proportional content of alpha-amylase and trypsin activity (units/kg of BW). These data indicate that carcass fatness traits and changes in the proportional weight of total viscera may be negatively associated with G:F and that visceral fat weight proportion and trim and kidney fat weight proportion may be important factors influencing this relationship.

Degree of connectedness among groups of centrally tested beef bulls

The degree of connectedness among test groups (TG) of bulls tested in central evaluation stations from 1988 to 2000 in Ontario, Canada, was evaluated using the following methods: average prediction error variance of the difference between estimated breeding values (PEVD), variance of estimated differences between test group effects (VED), connectedness rating (CR), and total number of direct genetic links between test groups (GLT). The model used in the analysis included the effects of breed and TG (fixed) and animal (random). PEVD was assumed the most adequate measure of connectedness and results from the alternative methods VED, CR, and GLT were compared against it. Models to predict the average PEVD of pairs of TG and the average PEVD of each TG with all other TG on the basis of VED, CR, and GLT were developed. Results from all measures of connectedness indicated an unfavorable trend in the degree of connectedness after 1994. The average PEVD of pairs of TG can be better predicted on the basis of the m...

Animal board invited review: genetic possibilities to reduce enteric methane emissions from ruminants

Measuring and mitigating methane (CH4) emissions from livestock is of increasing importance for the environment and for policy making. Potentially, the most sustainable way of reducing enteric CH4 emission from ruminants is through the estimation of genomic breeding values to facilitate genetic selection. There is potential for adopting genetic selection and in the future genomic selection, for reduced CH4 emissions from ruminants. From this review it has been observed that both CH4 emissions and production (g/day) are a heritable and repeatable trait. CH4 emissions are strongly related to feed intake both in the short term (minutes to several hours) and over the medium term (days). When measured over the medium term, CH4 yield (MY, g CH4/kg dry matter intake) is a heritable and repeatable trait albeit with less genetic variation than for CH4 emissions. CH4 emissions of individual animals are moderately repeatable across diets, and across feeding levels, when measured in respiration chambers. Repeatability is lower when short term measurements are used, possibly due to variation in time and amount of feed ingested prior to the measurement. However, while repeated measurements add value; it is preferable the measures be separated by at least 3 to 14 days. This temporal separation of measurements needs to be investigated further. Given the above issue can be resolved, short term (over minutes to hours) measurements of CH4 emissions show promise, especially on systems where animals are fed ad libitum and frequency of meals is high. However, we believe that for short-term measurements to be useful for genetic evaluation, a number (between 3 and 20) of measurements will be required over an extended period of time (weeks to months). There are opportunities for using short-term measurements in standardised feeding situations such as breath ‘sniffers’ attached to milking parlours or total mixed ration feeding bins, to measure CH4. Genomic selection has the potential to reduce both CH4 emissions and MY, but measurements on thousands of individuals will be required. This includes the need for combined resources across countries in an international effort, emphasising the need to acknowledge the impact of animal and production systems on measurement of the CH4 trait during design of experiments.

Impact of selection for residual feed intake on breeding soundness and reproductive performance of bulls on pasture-based multisire mating

There is concern in the beef industry that selecting bulls for feed efficiency based on residual feed intake (RFI) may have a negative impact on bull reproductive performance and fertility. Here we investigated the impact of selection of bulls for low RFI on breeding soundness evaluation (BSE), reproductive performance, and fertility of bulls under natural service in multisire mating groups on pasture. Of the 412 RFI-tested bulls available, 98 (23.8%) were culled for performance, type, temperament, or other reasons, and 88 (21.4%) were culled for failing BSE, for an overall cull rate of 45.1%. From among the 314 bulls subjected to BSE, 32 (10.2%), 20 (6.4%), and 36 (11.4%) were culled for poor feet and legs, scrotal circumference, and semen quality, respectively. The BSE traits were not different (P > 0.10) between bulls categorized as either inefficient (+RFI) or efficient (-RFI), but the proportion of bulls that failed to meet the 60% minimum sperm motility requirement tended (P = 0.07) to be greater in the -RFI group than in the +RFI group (10.2% vs. 4.4%, respectively). In a subpopulation of 115 bulls, individual progressive sperm motility was greater (P < 0.05) in +RFI (85%) than -RFI (80%) bulls. A multisire natural mating experiment was conducted during 2 consecutive breeding seasons (2006 to 2007 and 2007 to 2008) using 18 +RFI and 18 -RFI bulls. The overall calving rate (calves born/cows exposed) was 72.9%. Mean number of progeny per sire was significantly greater (P < 0.01) in -RFI bulls (18.3) than in +RFI bulls (11.8). Selection for feed efficiency based on RFI appears to have no detrimental impact on reproductive performance and fertility in beef bulls bred in multisire groups on pasture. However, the decreased sperm motility and the greater number of progeny per sire associated with -RFI status need further investigation.

The relationship between feed efficiency and the circadian profile of blood plasma analytes measured in beef heifers at different physiological stages

The characterization of blood metabolite concentrations over the circadian period and across physiological stages is important for understanding the biological basis of feed efficiency, and may culminate in indirect methods for assessing feed efficiency. Hematological analyses for albumin, urea, creatine kinase, glutamate dehydrogenase, aspartate aminotransferase, carbon dioxide, and acetate were carried out in growing and gestating heifers. These measures were carried out in a sample of 36 Bos taurus crossed beef heifers held under the same husbandry conditions. Hourly blood samples were collected over a 24-h period on three separate sampling occasions, corresponding approximately to the yearling (and open), early-gestation and late-gestation stages. This design was used to determine variation throughout the day, effects due to physiological status and any associations with feed efficiency, as measured by residual feed intake. Blood analyte levels varied with time of day, with the most variation occurring between 0800 and 1600 h. There were also considerable differences in analyte levels across the three physiological stages; for example, creatine kinase was higher (P<0.05) in open heifers, followed by early- and late-gestation heifers. Feed efficiency was also associated with analyte abundance. In more feed-efficient open heifers, there were higher activities of creatine kinase (P<0.05) and aspartate aminotransferase (P<0.05), and lower concentrations of carbon dioxide (P<0.05). Furthermore, in late gestation, more efficient heifers had lower urea concentrations (P<0.05) and lower creatine kinase levels (P<0.05). Over the whole experimental period, carbon dioxide concentrations were numerically lower in more feed efficient heifers (P=0.079). Differences were also observed across physiological stages. For instance, open heifers had increased levels (P<0.05) of creatine kinase, aspartate aminotransferase, carbon dioxide than early and late pregnancy heifers. In essence, this study revealed relevant information about the metabolic profile in the context of feed efficiency and physiological stages. Further optimization of our approach, along with the evaluation of complementary analytes, will aid in the development of robust, indirect assessments of feed efficiency.

Estimates of genetic parameters for stayability to consecutive calvings of Canadian Simmentals by random regression models1

Stayability to consecutive calvings was selected as a measure of cow longevity in the Canadian Simmental population. Calving performance data on 188,579 cows and culling information from the Total Herd Reporting System were used to determine whether a cow stayed in a herd for her second and later (up to the eighth) calvings, given that she had calved as 2 yr old. Binary records (n = 1,164,319) were analyzed with animal linear and threshold models including fixed effects of year of birth by season of birth by parity number and age of cow at first calving by parity number and random effects of contemporary group (CG) defined as herd of birth within year by season, animal additive genetic effect, and a cow permanent environmental (PE) effect. All random effects were Legendre polynomial regressions of the same order, defined on the scale from second to the eighth calving. Bayesian methods with Gibbs sampling were used to estimate covariance components and genetic parameters for random effects of models and selected variables on the longitudinal scale. Bayes factors and analyses of mean squared error and correlation between observed and predicted observations indicated that the linear model with regressions of order 3 was most plausible for generating the current data compared with a fixed regression and other random regression (both linear and threshold) models of order up to 4. Estimates of variances for all random effects from the best fitting model changed with the calving number. Estimates of heritability decreased in time: from 0.35 (SD = 0.006) for stayability to second calving to 0.13 (SD = 0.004) for stayability to the eighth calving. Variance due to PE effect constituted the largest part of the total variance of stayability for all longitudinal points followed by genetic and CG components. Genetic effects of stayability to different calvings were relatively highly correlated, from 0.62 (SD = 0.011) to 0.99 (SD = 0.001), and correlation decreased with the time span between calvings. Correlations for PE and CG effects showed similar trends. Animal genetic effect seemed to be less variable on the longitudinal scale compared with other random effects of the model. The first 2 principal components explained from 95% (PE effects) to 99% (genetic effect) of the total variance. The overall level of genetic stayability curve correlated well (from 0.87 to 0.99, with SD < 0.006) with genetic stayability to different calvings and therefore could be used as a single criterion in selection for stayability.

A meta-analysis of the effects of dietary copper, molybdenum, and sulfur on plasma and liver copper, weight gain, and feed conversion in growing-finishing cattle

The minerals Cu, Mo, and S are essential for metabolic functions related to cattle health and performance. The interaction between Cu, Mo, and S can determine the utilization of each mineral, in particular Cu, by ruminants. A meta-analysis was performed to evaluate the effects of dietary Cu, Mo, and S and their interactions on plasma and liver Cu, ADG, and G:F in growing-finishing cattle. Data were collated from 12 published studies. The model with the best fit to data indicated plasma Cu was positively affected by dietary Cu (P < 0.01) and negatively affected by both dietary Mo (P < 0.01) and S (P < 0.01). Another model also indicated that plasma Cu concentration is positively related to Cu:Mo ratio in the diet (P < 0.01). Dietary Cu had a positive effect on liver Cu (P < 0.01), whereas Mo showed a negative effect (P < 0.05), and no effect of dietary S on liver Cu was observed (P > 0.05). Average daily gain was negatively affected by dietary Mo (P < 0.05) and S (P < 0.01) and positively affected by Cu:Mo ratio (P < 0.01), likely because an increased Cu:Mo ratio minimizes the antagonistic effect of Mo on Cu. The feed conversion ratio was negatively affected by Mo (P < 0.05) and S (P < 0.01), whereas effects of the Cu:Mo ratio and dietary Cu were not significant (P > 0.05). The interaction between S and Mo affected (P < 0.01) G:F, which was likely related to a positive response with the proper balance between these minerals. In conclusion, dietary Cu, Mo, and S and the Cu:Mo ratio caused changes in plasma Cu. Only dietary Mo and S led to a negative response in the performance of growing-finishing cattle, whereas the diet Cu:Mo ratio has a linear and quadratic effect on ADG. Nutritionists and producers need to consider with caution the supplementation of growing-finishing cattle diets with Mo and S because of their potentially adverse effects on animal performance. An appropriate Cu:Mo ratio is desirable to minimize the effects of an impaired supply of Mo on Cu metabolism and ADG.

Genetic correlations among indicator traits for carcass composition measured in yearling beef bulls and finished feedlot steers

Genetic correlations were examined among 10 live growth and ultrasound traits measured in yearling beef bulls (n = 2172) and four carcass traits measured in crossbred finished feedlot steers (n = 1031). Heritabilities ranged from 0.13 (bull ultrasound longissimus muscle width) to 0.83 (yearling bull hip height). Genetic correlations indicated that selecting yearling bulls for increased growth rate and hip height would lead to higher carcass weight, increased longissimus muscle area and reduced levels of carcass marbling in steers. Bull ultrasound fat depth was positively associated with both carcass fat depth and marbling score. Most ultrasound longissimus muscle size measurements in bulls were positively associated with each other and with carcass longissimus muscle area in steers, but the magnitude of the genetic correlation with carcass measurements depended on the bull longissimus muscle size trait in question. This suggests that longissimus muscle shape in bulls may be related to carcass weight, fat ...