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Featured researches published by Sa Thompson.


IEEE Transactions on Biomedical Engineering | 2013

Toward Detection and Localization of Instruments in Minimally Invasive Surgery

Max Allan; Sebastien Ourselin; Sa Thompson; David J. Hawkes; John D. Kelly; Danail Stoyanov

Methods for detecting and localizing surgical instruments in laparoscopic images are an important element of advanced robotic and computer-assisted interventions. Robotic joint encoders and sensors integrated or mounted on the instrument can provide information about the tools position, but this often has inaccuracy when transferred to the surgeons point of view. Vision sensors are currently a promising approach for determining the position of instruments in the coordinate frame of the surgical camera. In this study, we propose a vision algorithm for localizing the instruments pose in 3-D leaving only rotation in the axis of the tools shaft as an ambiguity. We propose a probabilistic supervised classification method to detect pixels in laparoscopic images that belong to surgical tools. We then use the classifier output to initialize an energy minimization algorithm for estimating the pose of a prior 3-D model of the instrument within a level set framework. We show that the proposed method is robust against noise using simulated data and we perform quantitative validation of the algorithm compared to ground truth obtained using an optical tracker. Finally, we demonstrate the practical application of the technique on in vivo data from minimally invasive surgery with traditional laparoscopic and robotic instruments.


international conference information processing | 2014

2D-3D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery

Max Allan; Sa Thompson; Matthew J. Clarkson; Sebastien Ourselin; David J. Hawkes; John D. Kelly; Danail Stoyanov

Instrument localization and tracking is an important challenge for advanced computer assisted techniques in minimally invasive surgery and image-based solutions to instrument localization can provide a non-invasive, low cost solution. In this study, we present a novel algorithm capable of recovering the 3D pose of laparoscopic surgical instruments combining constraints from a classification algorithm, multiple point features, stereo views (when available) and a linear motion model to robustly track the tool in surgical videos. We demonstrate the improved robustness and performance of our algorithm with optically tracked ground truth and additionally qualitatively demonstrate its performance on in vivo images.


computer assisted radiology and surgery | 2015

The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging

Matthew J. Clarkson; Gergely Zombori; Sa Thompson; Johannes Totz; Yi Song; Miklos Espak; Stian Flage Johnsen; David J. Hawkes; Sebastien Ourselin


computer assisted radiology and surgery | 2015

Locally rigid, vessel-based registration for laparoscopic liver surgery

Yi Song; Johannes Totz; Sa Thompson; Stian Flage Johnsen; Dean C. Barratt; Crispin Schneider; Kurinchi Selvan Gurusamy; Brian R. Davidson; Sebastien Ourselin; David J. Hawkes; Matthew J. Clarkson


In: BJU INTERNATIONAL. (pp. 40 - 40). BLACKWELL PUBLISHING (2008) | 2008

Bone segmentation using a CT based statistical shape model for image guidance in robot assisted prostatectomy

Sa Thompson; Gp Penney; David J. Hawkes; Prokar Dasgupta


Presented at: Young Researchers' Futures Meeting, Imperial College, London. (2016) | 2016

Development, Validation, and Modelling of Image Guidance Systems for Surgery

Sa Thompson; Crispin Schneider; Kurinchi Selvan Gurusamy; David J. Hawkes; B Davidson; Matthew J. Clarkson


Hpb | 2016

Preliminary results from a clinical study evaluating a novel image guidance system for laparoscopic liver surgery

Crispin Schneider; Sa Thompson; Yi Song; Johannes Totz; Adrien E. Desjardins; Kurinchi Selvan Gurusamy; Danail Stoyanov; Matthew J. Clarkson; David J. Hawkes; Brian R. Davidson


Ejso | 2016

18. A pilot study evaluating the overlay display method for image guidance in laparoscopic liver surgery

Crispin Schneider; Sa Thompson; Johannes Totz; Yi Song; Kurinchi Selvan Gurusamy; Sebastien Ourselin; Danail Stoyanov; Matthew J. Clarkson; David J. Hawkes; Brian R. Davidson


In: Yang, GZ and Darzi, A, (eds.) Proceedings of the Hamlyn Symposium on Medical Robotics 2015. (pp. pp. 55-56). Imperial College London: London. (2015) | 2015

SmartLiver Image Guidance System for Laparoscopic Liver Resection

Sa Thompson; Johannes Totz; Yi Song; Stian Flage Johnsen; Danail Stoyanov; Sebastien Ourselin; Kurinchi Selvan Gurusamy; Crispin Schneider; B Davidson; David J. Hawkes; Matthew J. Clarkson


In: (Proceedings) 2nd Digestive-Disorders-Federation Conference. (pp. A453-A454). BMJ PUBLISHING GROUP (2015) | 2015

EVALUATION OF A NOVEL SYSTEM FOR IMAGE GUIDED LAPAROSCOPIC LIVER SURGERY IN AN ANIMAL MODEL AND FIRST CLINICAL EXPERIENCE

Crispin Schneider; Sa Thompson; Johannes Totz; Yi Song; Stian Flage Johnsen; Danail Stoyanov; Sebastien Ourselin; Kurinchi Selvan Gurusamy; David J. Hawkes; Matthew J. Clarkson; B Davidson

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David J. Hawkes

University College London

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Danail Stoyanov

University College London

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Johannes Totz

University College London

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Yi Song

University College London

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