Sa Thompson
University College London
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Publication
Featured researches published by Sa Thompson.
IEEE Transactions on Biomedical Engineering | 2013
Max Allan; Sebastien Ourselin; Sa Thompson; David J. Hawkes; John D. Kelly; Danail Stoyanov
Methods for detecting and localizing surgical instruments in laparoscopic images are an important element of advanced robotic and computer-assisted interventions. Robotic joint encoders and sensors integrated or mounted on the instrument can provide information about the tools position, but this often has inaccuracy when transferred to the surgeons point of view. Vision sensors are currently a promising approach for determining the position of instruments in the coordinate frame of the surgical camera. In this study, we propose a vision algorithm for localizing the instruments pose in 3-D leaving only rotation in the axis of the tools shaft as an ambiguity. We propose a probabilistic supervised classification method to detect pixels in laparoscopic images that belong to surgical tools. We then use the classifier output to initialize an energy minimization algorithm for estimating the pose of a prior 3-D model of the instrument within a level set framework. We show that the proposed method is robust against noise using simulated data and we perform quantitative validation of the algorithm compared to ground truth obtained using an optical tracker. Finally, we demonstrate the practical application of the technique on in vivo data from minimally invasive surgery with traditional laparoscopic and robotic instruments.
international conference information processing | 2014
Max Allan; Sa Thompson; Matthew J. Clarkson; Sebastien Ourselin; David J. Hawkes; John D. Kelly; Danail Stoyanov
Instrument localization and tracking is an important challenge for advanced computer assisted techniques in minimally invasive surgery and image-based solutions to instrument localization can provide a non-invasive, low cost solution. In this study, we present a novel algorithm capable of recovering the 3D pose of laparoscopic surgical instruments combining constraints from a classification algorithm, multiple point features, stereo views (when available) and a linear motion model to robustly track the tool in surgical videos. We demonstrate the improved robustness and performance of our algorithm with optically tracked ground truth and additionally qualitatively demonstrate its performance on in vivo images.
computer assisted radiology and surgery | 2015
Matthew J. Clarkson; Gergely Zombori; Sa Thompson; Johannes Totz; Yi Song; Miklos Espak; Stian Flage Johnsen; David J. Hawkes; Sebastien Ourselin
computer assisted radiology and surgery | 2015
Yi Song; Johannes Totz; Sa Thompson; Stian Flage Johnsen; Dean C. Barratt; Crispin Schneider; Kurinchi Selvan Gurusamy; Brian R. Davidson; Sebastien Ourselin; David J. Hawkes; Matthew J. Clarkson
In: BJU INTERNATIONAL. (pp. 40 - 40). BLACKWELL PUBLISHING (2008) | 2008
Sa Thompson; Gp Penney; David J. Hawkes; Prokar Dasgupta
Presented at: Young Researchers' Futures Meeting, Imperial College, London. (2016) | 2016
Sa Thompson; Crispin Schneider; Kurinchi Selvan Gurusamy; David J. Hawkes; B Davidson; Matthew J. Clarkson
Hpb | 2016
Crispin Schneider; Sa Thompson; Yi Song; Johannes Totz; Adrien E. Desjardins; Kurinchi Selvan Gurusamy; Danail Stoyanov; Matthew J. Clarkson; David J. Hawkes; Brian R. Davidson
Ejso | 2016
Crispin Schneider; Sa Thompson; Johannes Totz; Yi Song; Kurinchi Selvan Gurusamy; Sebastien Ourselin; Danail Stoyanov; Matthew J. Clarkson; David J. Hawkes; Brian R. Davidson
In: Yang, GZ and Darzi, A, (eds.) Proceedings of the Hamlyn Symposium on Medical Robotics 2015. (pp. pp. 55-56). Imperial College London: London. (2015) | 2015
Sa Thompson; Johannes Totz; Yi Song; Stian Flage Johnsen; Danail Stoyanov; Sebastien Ourselin; Kurinchi Selvan Gurusamy; Crispin Schneider; B Davidson; David J. Hawkes; Matthew J. Clarkson
In: (Proceedings) 2nd Digestive-Disorders-Federation Conference. (pp. A453-A454). BMJ PUBLISHING GROUP (2015) | 2015
Crispin Schneider; Sa Thompson; Johannes Totz; Yi Song; Stian Flage Johnsen; Danail Stoyanov; Sebastien Ourselin; Kurinchi Selvan Gurusamy; David J. Hawkes; Matthew J. Clarkson; B Davidson