Sami Heikkinen

Antibacterial activities of temporin A analogs

Temporin A (TA) is a small, basic, highly hydrophobic, antimicrobial peptide amide (FLPLIGRVLSGIL‐NH2) found in the skin of the European red frog, Rana temporaria. It has variable antibiotic activities against a broad spectrum of microorganisms, including clinically important methicillin‐sensitive and ‐resistant Staphylococcus aureus as well as vancomycin‐resistant Enterococcus faecium strains. In this investigation the antimicrobial activity and structural characteristics of TA synthetic analogs were studied. For antibacterial activity against S. aureus and enterococcal strains, the hydrophobicity of the N‐terminal amino acid of TA was found to be important as well as a positive charge at amino acid position 7, and bulky hydrophobic side chains at positions 5 and 12. Replacing isoleucine with leucine at amino acid positions 5 and 12 resulted in the greatest enhancement of antibacterial activity. In addition, there was little difference between the activities of TA and its all‐D enantiomer, indicating that the peptide probably exerts its effect on bacteria via non‐chiral interactions with membrane lipids.

Atomic Structures of Two Novel Immunoglobulin-like Domain Pairs in the Actin Cross-linking Protein Filamin

Filamins are actin filament cross-linking proteins composed of an N-terminal actin-binding domain and 24 immunoglobulin-like domains (IgFLNs). Filamins interact with numerous proteins, including the cytoplasmic domains of plasma membrane signaling and cell adhesion receptors. Thereby filamins mechanically and functionally link the cell membrane to the cytoskeleton. Most of the interactions have been mapped to the C-terminal IgFLNs 16–24. Similarly, as with the previously known compact domain pair of IgFLNa20–21, the two-domain fragments IgFLNa16–17 and IgFLNa18–19 were more compact in small angle x-ray scattering analysis than would be expected for two independent domains. Solution state NMR structures revealed that the domain packing in IgFLNa18–19 resembles the structure of IgFLNa20–21. In both domain pairs the integrin-binding site is masked, although the details of the domain-domain interaction are partly distinct. The structure of IgFLNa16–17 revealed a new domain packing mode where the adhesion receptor binding site of domain 17 is not masked. Sequence comparison suggests that similar packing of three tandem filamin domain pairs is present throughout the animal kingdom, and we propose that this packing is involved in the regulation of filamin interactions through a mechanosensor mechanism.

Noncovalent attachment of pyro-pheophorbide a to a carbon nanotube

Pyrene mediated noncovalent attachment of a chlorophyll derivative, pyro-pheophorbide a, to a soluble single wall carbon nanotube is reported and the resultant CD, UV-Vis absorbance, fluorescence and 1H NMR spectra are discussed.

Stimulus‐induced brain lactate: effects of aging and prolonged wakefulness

Both aging and sleep deprivation disturb the functions of the frontal lobes. Deficits in brain energy metabolism have been reported in these conditions. Neurons use not only glucose but also lactate as their energy substrate. The physiological response to elevated neuronal activity is a transient increase in lactate concentrations in the stimulated area. We have previously shown that cognitive stimulation increases brain lactate. To study the effect of prolonged wakefulness on the lactate response we designed an experiment to assess brain lactate levels during a 40‐h sleep deprivation period in young (19–24 years old; n = 13) and in aged (60–68 years old; n = 12) healthy female volunteers. Brain lactate levels were assessed with proton MR‐spectroscopy (1H MRS) during the performance of a silent word generation task. The 1H MRS voxel location was individually selected, using functional magnetic resonance imaging, to cover the activated area in the left frontal lobe. The degree of sleepiness was verified using vigilance tests and self‐rating scales. In the young alert subjects, the silent word generation test induced a 40% increase in lactate, but during the prolonged wakefulness period this response disappeared. In the aged subjects, the lactate response could not be detected even in the alert state. We propose that the absence of the lactate response may be a sign of malfunctioning of normal brain energy metabolism. The behavioral effects of prolonged wakefulness and aging may arise from this dysfunction.

Quantitative two-dimensional HSQC experiment for high magnetic field NMR spectrometers.

The finite RF power available on carbon channel in proton-carbon correlation experiments leads to non-uniform cross peak intensity response across carbon chemical shift range. Several classes of broadband pulses are available that alleviate this problem. Adiabatic pulses provide an excellent magnetization inversion over a large bandwidth, and very recently, novel phase-modulated pulses have been proposed that perform 90 degrees and 180 degrees magnetization rotations with good offset tolerance. Here, we present a study how these broadband pulses (adiabatic and phase-modulated) can improve quantitative application of the heteronuclear single quantum coherence (HSQC) experiment on high magnetic field strength NMR spectrometers. Theoretical and experimental examinations of the quantitative, offset-compensated, CPMG-adjusted HSQC (Q-OCCAHSQC) experiment are presented. The proposed experiment offers a formidable improvement to the offset performance; (13)C offset-dependent standard deviation of the peak intensity was below 6% in range of+/-20 kHz. This covers the carbon chemical shift range of 150 ppm, which contains the protonated carbons excluding the aldehydes, for 22.3 T NMR magnets. A demonstration of the quantitative analysis of a fasting blood plasma sample obtained from a healthy volunteer is given.

Enhanced chromatographic NMR with polyethyleneglycol. A novel resolving agent for diffusion ordered spectroscopy

NMR analysis of complex mixtures can be significantly simplified using polyethyleneglycol (PEG) as resolving additive in DOSY NMR technique, which allows the extraction of individual spectra of mixture components with differing polarity. Resolving power of PEG‐assisted DOSY was demonstrated with natural product mixtures. Copyright

PRESS echo time behavior of triglyceride resonances at 1.5 T: Detecting ω-3 fatty acids in adipose tissue in vivo

AIM This study investigated the impact of fatty acid (FA) composition on the echo time behavior of triglyceride resonances in a clinical setting. The feasibility of (1)H NMR spectroscopy to detect these resonances was also evaluated in human adipose tissue in vivo. METHOD Ten edible oils chosen to cover a wide spectrum of FA compositions were used as phantom material. The detailed FA composition and intrinsic proton spectra of the oils were characterized by gas chromatography and high-resolution (1)H NMR spectroscopy (11.7T), respectively. The detailed echo time behavior of the oils were subsequently measured by (1)H NMR spectroscopy in a clinical scanner (1.5T) using PRESS. The effect of temperature was investigated in five oils. RESULTS The olefinic (5.3 ppm) and diallylic (2.8 ppm) resonances exhibited distinct J-modulation patterns independent of oil FA composition. The methylene resonance (1.3 ppm) displayed an exponential decay, with the apparent T(2) showing a weak positive correlation with oil unsaturation (R=0.628, P=0.052), probably a result of changes in viscosity. For the methyl resonance (0.9 ppm), oils high in omega-3 FA displayed a markedly different J-modulation pattern compared to non-omega-3 oils. The characteristic J-modulation of the omega-3 methyl group could be attributed to the phase behavior of the omega-3 methyl triplet signal (all triplet lines in-phase at TE of 135 ms), a result of the omega-3 methyl end forming a first order spin system. The omega-3 methyl outer triplet line at 1.08ppm of the TE=140 ms spectrum was found to be useful for determining the omega-3 content of the oils (R=0.999, standard error of estimate (SE) 0.80). The olefinic and diallylic proton resonance (measured at TE=50 ms) areas correlated with the olefinic (R=0.993, SE 0.33) and diallylic (R=0.997, SE 0.19) proton contents calculated from the GC data. Information derived from long echo time spectra (TE=200) demonstrated good correlations to GC data and showed no change with increasing temperature (and T(2)). In (1)H NMR spectra (1.5T) of adipose tissue in five healthy subjects, the analytically important olefinic and diallylic resonances were clearly resolved with a coefficient of variation of 1.6% and 8.4%, respectively, for repeated measurements. The characteristic phase behavior of the omega-3 methyl outer triplet line at 1.08 ppm could also be detected at very long echo times (470 and 540 ms). CONCLUSION Fatty acid composition has an impact on the echo time behavior of triglyceride resonances. Long TE spectra can resolve omega-3 FA in adipose tissue in vivo. These findings will benefit long TE studies of tissue lipids.

Challenges in analysis of high-molar mass dextrans: Comparison of HPSEC, AsFlFFF and DOSY NMR spectroscopy

Dilute solutions of various dextran standards, a high-molar mass (HMM) commercial dextran from Leuconostoc spp., and HMM dextrans isolated from Weissella confusa and Leuconostoc citreum were analyzed with high-performance size-exclusion chromatography (HPSEC), asymmetric flow field-flow fractionation (AsFlFFF), and diffusion-ordered NMR spectroscopy (DOSY). HPSEC analyses were performed in aqueous and dimethyl sulfoxide (DMSO) solutions, while only aqueous solutions were utilized in AsFlFFF and DOSY. The study showed that all methods were applicable to dextran analysis, but differences between the aqueous and DMSO-based solutions were obtained for HMM samples. These differences were attributed to the presence of aggregates in aqueous solution that were less prevalent in DMSO. The study showed that DOSY provides an estimate of the size of HMM dextrans, though calibration standards may be required for each experimental set-up. To our knowledge, this is the first study utilizing these three methods in analyzing HMM dextrans.

Boron neutron capture therapy (BNCT) in Finland: Technological and physical prospects after 20 years of experiences

Boron Neutron Capture Therapy (BNCT) is a binary radiotherapy method developed to treat patients with certain malignant tumours. To date, over 300 treatments have been carried out at the Finnish BNCT facility in various on-going and past clinical trials. In this technical review, we discuss our research work in the field of medical physics to form the groundwork for the Finnish BNCT patient treatments, as well as the possibilities to further develop and optimize the method in the future. Accordingly, the following aspects are described: neutron sources, beam dosimetry, treatment planning, boron imaging and determination, and finally the possibilities to detect the efficacy and effects of BNCT on patients.

A new method for rapid degree of substitution and purity determination of chloroform-soluble cellulose esters, using 31P NMR

Chloroform-soluble palmitic and decanoic acid esters of cellulose were synthesized from the reaction of MCC with acid chlorides in LiCl/DMA and the ionic liquid [amim]Cl, as novel cellulose solvents. A process of derivatization of the remaining hydroxyl groups, as phosphite esters and subsequent 31P NMR analysis, allowed for simultaneous degree of substitution (DS) determination and quantification of the aqueous-quench acid by-product impurity, after the appropriate calculation. The full mathematical treatment for DS determination is presented, including scripts for the Python and Java programming languages for rapid interpretation of results. This method for DS determination was validated against traditional analyses of the palmitoyl cellulose and the fully substituted p-nitrobenzoyl palmitoyl diester product, from additional reaction with p-nitrobenzoyl chloride. DOSY NMR and SCORE analyses were also employed to demonstrate the utility of this rapid 31P derivatization and analytical process over traditional 1D NMR analyses.