Sami Souissi

Plankton effect on cod recruitment in the North Sea.

The Atlantic cod (Gadus morhua L.) has been overexploited in the North Sea since the late 1960s and great concern has been expressed about the decline in cod biomass and recruitment. Here we show that, in addition to the effects of overfishing, fluctuations in plankton have resulted in long-term changes in cod recruitment in the North Sea (bottom-up control). Survival of larval cod is shown to depend on three key biological parameters of their prey: the mean size of prey, seasonal timing and abundance. We suggest a mechanism, involving the match/mismatch hypothesis, by which variability in temperature affects larval cod survival and conclude that rising temperature since the mid-1980s has modified the plankton ecosystem in a way that reduces the survival of young cod.

A multi-agents architecture to enhance end-user individual-based modelling

Abstract The increasing importance of individual-based modelling (IBM) in population dynamics has led to the greater availability of tools designed to facilitate their creation and use. Yet, these tools are either too general, requiring the extensive knowledge of a computer language, or conversely restricted to very specific applications. Hence, they are of little help to non-computer expert ecologists. In order to build IBMs without hard coding them nor restricting their scope too much, we suggest a component programming, assuming that each elementary task that forms the behaviour of an individual often follows the same path: an individual must locate and select information in order for it to be processed, then he must update his state, the state of other individuals, or the state of the rest of the ‘world’. This sequence is well suited to translation into elementary computerised components, that we call primitives. Conversely, task building will involve stringing out well-chosen primitives and setting their parameter values or mathematical formulae. In order to restrict the number of primitives and to simplify their use, ‘information’ must be carried through well defined structures. We suggest the use of the multi-agents system paradigm (MAS) which originates from the distributed artificial intelligence and defines agents as autonomous objects that perceive and react to their environment. If one assumes that a model can be described entirely with the help of agents, then primitives only handle agents, agent state or history. This greatly simplifies their conception and enhances their flexibility. Indeed, only 25 primitives, split into six groups (locate, select, translate, compute, end, and workflow control) proved to be sufficient to build complex IBMs or cellular automata drawn from literature. Furthermore, such a primitive-based multi-agents architecture is very flexible and facilitates all the steps of the modelling process, in particular the simulation engine (agents call and synchronisation), the results analysis, and the simulation experiments. Component programming may also facilitate the design of a domain specific language in which these models could be written and exported to other simulation platforms.

Microplastic Size-Dependent Toxicity, Oxidative Stress Induction, and p-JNK and p-p38 Activation in the Monogonont Rotifer (Brachionus koreanus)

In this study, we evaluated accumulation and adverse effects of ingestion of microplastics in the monogonont rotifer (Brachionus koreanus). The dependence of microplastic toxicity on particle size was investigated by measuring several in vivo end points and studying the ingestion and egestion using 0.05-, 0.5-, and 6-μm nonfunctionalized polystyrene microbeads. To identify the defense mechanisms activated in response to microplastic exposure, the activities of several antioxidant-related enzymes and the phosphorylation status of mitogen-activated protein kinases (MAPKs) were determined. Exposure to polystyrene microbeads of all sizes led to significant size-dependent effects, including reduced growth rate, reduced fecundity, decreased lifespan and longer reproduction time. Rotifers exposed to 6-μm fluorescently labeled microbeads exhibited almost no fluorescence after 24 h, while rotifers exposed to 0.05- and 0.5-μm fluorescently labeled microbeads displayed fluorescence until 48 h, suggesting that 6-μm microbeads are more effectively egested from B. koreanus than 0.05- or 0.5-μm microbeads. This observation provides a potential explanation for our findings that microbead toxicity was size-dependent and smaller microbeads were more toxic. In vitro tests revealed that antioxidant-related enzymes and MAPK signaling pathways were significantly activated in response to microplastic exposure in a size-dependent manner.

Tidal influence on the distribution of hydrophobic organic contaminants in the Seine Estuary and biomarker responses on the copepod Eurytemora affinis

To elucidate tidally related variations of hydrophobic organic contaminant (HOC) bioavailability and the impact of these contaminants on estuarine ecosystems, both PCB and PAH concentrations were investigated in the dissolved phase and in the suspended particulate material (SPM) of the Seine Estuary. Both PAH and PCB highest levels were observed in surface and bottom water when SPM remobilizations were maximum, in relation to higher speed currents. In parallel, acetylcholinesterase (AChE) and glutathione-S-transferase (GST) activities were investigated in the copepod Eurytemora affinis. Significant decreasing AChE levels were measured during the tidal cycle and between surface and bottom copepods related to salinity and to HOC concentration variations. Significant increasing GST levels were also observed when HOC concentrations in the water column were the highest. This study underlined the need to standardize sampling procedures for biomonitoring studies in order to avoid interfering factors that could modify biomarker responses to chemical exposure.

Phenological changes in the Northwestern Mediterranean copepods Centropages typicus and Temora stylifera linked to climate forcing

Planktonic copepods play a major role in the fluxes of matter and energy in the marine ecosystem, provide a biological pump of carbon into the deep ocean, and play a role in determining fish recruitment. Owing to such ecological considerations, it is essential to understand the role that climate might play in the interannual variability of these organisms and the mechanisms by which it could modify the ecosystem functioning. In this study, a causal chain of meteorological, hydrological and ecological processes linked to the North Atlantic Oscillation (NAO) was identified in the Ligurian Sea, Northwestern Mediterranean. The forcing by the NAO drives most of the hydro-climatic variability during winter and early spring. Subsequently, interannual and decadal changes of the dominant copepods Centropages typicus and Temora stylifera were significantly correlated to the state of the hydro-climatic signal and tightly coupled to the NAO. Direct and indirect effects whose influence promoted phenological changes in the two copepod populations drove the species’ responses to climatic forcing. Opposite responses of the analysed species were also highlighted by these results. While years characterized by the positive phase of the NAO leads to enhancement of the strength and the forward move of the C. typicus peak, they act negatively on the annual cycle of T. stylifera, the abundance of which drops twofold and the annual peak appears delayed in time. In contrast, low NAO years lead to high abundance of T. stylifera and a forward timing of its peak, and acts in turn negatively on the C. typicus annual cycle in both abundance (low) and timing (delayed). Owing to the synchronism between hydro-climatic conditions and the NAO, and the major role of these species in the pelagic ecosystem of the studied area, these results provide key elements for interpreting and forecasting decadal changes of planktonic populations in the Ligurian Sea.

A new multivariate mapping method for studying species assemblages and their habitats: Example using bottom trawl surveys in the Bay of Biscay (France)

Abstract This new numerical approach proposes a solution to a fundamental and difficult question in ecology, consisting of the correct geographical representation of multidimensional structures. Firstly, transformation was applied to the original matrix (n sites x q variables) in order to satisfy the condition of multinormality. Then, a hierarchical cluster analysis was used and each hierarchical level was studied and characterised by a certain probability level. For each cut off level an algorithm based on the computation of the Bayesian probabilities produced a smaller matrix (n sites x c groups). These conditional probabilities measure the chance that each site has in belonging to a predefined group of sites. Spatial distributions of these probability values for each group of sites were mapped using kriging interpolation. Finally, the maps were used to define homogenous zones on a single map by superimposing one map on the other. The maximal value of interpolated probability was used as criterion to assign each point of the map to the zones predefined by this classification. This method was applied to map demersal fish habitats by using a dataset from bottom trawl surveys in the Bay of Biscay (France) during October 1990. The boundaries between habitats wae identitied objectively. Then, the indicator species and species assemblages characterising the different habitats were identitied by using an indicator value index. This index integrates the speciticity and the fidelity quantities calculated for each species in each habitat. The obtained results showed that this method presented a robust tool to describe the habitat of exploited species. The obtained habitats were validated by their correspondence with depth strata, sediment type and also by the biological characteristics of the indicator species. The proposed method is useful in the study of temporal variations of habitats with regards to species assemblages and can also be generalised to other multivariate databases of different descriptors (physical, chemical, biological, etc.).

Copepod communities related to water masses in the southwest East China Sea

The East China Sea is characterized by a complex hydrographic regime and high biological productivity and diversity. This environmental setting in particular challenged a case study on the use of mesozooplankton community parameters as indicators of water masses. In order to reveal spatial patterns of zooplankton communities during summer, a large scale oceanic transect study was conducted. Two transects were taken in the southwest East China Sea region, covering for the first time the China shelf, slope, and the estuaries of the Yangtze river and of the Minjiang river, the northern Taiwan Strait, and the Kuroshio Current region. A total of 77 copepod species were quantified. Copepod abundance was significantly higher in the estuary of the Yangtze River runoff mixture waters and lowest at the Kuroshio Current Region. The calanoid Parvocalanus crassirostris was the most frequently occurring and abundant species retrieved from 27 samples of a total of 39 samples. The use of multivariate cluster analysis separated the Mainland China Shelf from the northern Taiwan Strait and the Kuroshio Current Region at the first hierarchical level. The use of an indicator value method (IndVal) associated with each cluster of stations revealed characteristic species assemblages. Two hierarchical levels defined 4 assemblages within geographical sectors representing copepod assemblages of the Kuroshio Current Region, of the northern Taiwan Strait and the southern China Shelf near the estuary of the Minjiang River and northern stations near the estuary of the Yangtze River. Overall, there was a strong correspondence between the distribution of certain copepod species and water masses. Differences between the Mainland China shelf, the northern Taiwan Strait and the Kuroshio Current Region were characterized by differences in species composition and abundance. Water mass boundaries in the study area were exclusively indicated by distinct differences in species composition, emphasizing a correlation between copepod communities and water masses of the southwest East China Sea in summer.

Changes in the swimming behavior of Eurytemora affinis (Copepoda, Calanoida) in response to a sub-lethal exposure to nonylphenols.

Estuarine waters are continuously loaded with chemicals which affect the physiology of aquatic organisms to various extents. They also have adverse effects on a wide range of behaviors. Nonylphenols and related compounds are biodegradation products of the nonionic surfactants nonylphenol polyethoxylates. They are commonly found in the aquatic environment. We observed immediate alterations of the free swimming activity of the calanoid copepod Eurytemora affinis from the Seine estuary in response to a sub-lethal concentration of nonylphenols (4-NP and NP1EC) at environmentally realistic concentrations (2 μg/L). Swimming speed and activity increased for both males and females. The use of copepod kinematic proved to be a sensitive indicator of sub-lethal exposure to pollutants.

Uptake and elimination of hydrophobic organic contaminants in estuarine copepods: An experimental study

Polycyclic aromatic hydrocarbons (PAHs) are considered to be rapidly biotransformed by organisms, whereas polychlorinated biphenyls (PCBs) are strongly bioaccumulated. In the present study, the estuarine copepod Eurytemora affinis was exposed in a continuous flow-through system to dissolved PAH (500 ng/L) and PCB (300 ng/L) mixtures for 86 h, whereas control groups were placed in a continuous flow-through system with clean water. Both PCB and PAH body residues were measured and compared in exposed and in nonexposed copepods to assess the uptake and the elimination of these two contaminant classes in this copepod species. After the exposure, exposed copepods exhibited concentration factors, based on a dry-weight basis, of 25, 750, and 1,200, respectively, for total PCBs and PAHs. The lower concentrations of PAHs in the nonexposed versus exposed copepods in contrast to small differences for PCBs suggest a higher rate of metabolism of PAHs compared with PCBs and could explain the differences observed in the accumulation. Furthermore, uptake as well as elimination of both PCBs and PAHs were compound selective in E. affinis. Therefore, higher-molecular-weight PCBs and PAHs were preferentially accumulated, while lower-molecular-weight compounds were preferentially eliminated. These results suggest the importance of copepods in the biogeochemical cycles of hydrophobic organic contaminants in estuarine ecosystems.

Adverse effects of microplastics and oxidative stress-induced MAPK/Nrf2 pathway-mediated defense mechanisms in the marine copepod Paracyclopina nana

Microplastic pollution causes a major concern in the marine environment due to their worldwide distribution, persistence, and adverse effects of these pollutants in the marine ecosystem. Despite its global presence, there is still a lack of information on the effect of microplastics on marine organisms at the molecular level. Herein we demonstrated ingestion and egestion of nano- (0.05 μm) and micro-sized (0.5 and 6 μm) polystyrene microbeads in the marine copepod Paracyclopina nana, and examined molecular responses to exposure to microbeads with in vivo endpoints such as growth rate and fecundity. Also, we proposed an adverse outcome pathway for microplastic exposure that covers molecular and individual levels. This study provides the first insight into the mode of action in terms of microplastic-induced oxidative stress and related signaling pathways in P. nana.