Samiksha Singh

Heavy Metal Tolerance in Plants: Role of Transcriptomics, Proteomics, Metabolomics, and Ionomics

Heavy metal contamination of soil and water causing toxicity/stress has become one important constraint to crop productivity and quality. This situation has further worsened by the increasing population growth and inherent food demand. It has been reported in several studies that counterbalancing toxicity due to heavy metal requires complex mechanisms at molecular, biochemical, physiological, cellular, tissue, and whole plant level, which might manifest in terms of improved crop productivity. Recent advances in various disciplines of biological sciences such as metabolomics, transcriptomics, proteomics, etc., have assisted in the characterization of metabolites, transcription factors, and stress-inducible proteins involved in heavy metal tolerance, which in turn can be utilized for generating heavy metal-tolerant crops. This review summarizes various tolerance strategies of plants under heavy metal toxicity covering the role of metabolites (metabolomics), trace elements (ionomics), transcription factors (transcriptomics), various stress-inducible proteins (proteomics) as well as the role of plant hormones. We also provide a glance of some strategies adopted by metal-accumulating plants, also known as “metallophytes.”

Reactive Oxygen Species (ROS): Beneficial Companions of Plants’ Developmental Processes

Reactive oxygen species (ROS) are generated inevitably in the redox reactions of plants, including respiration and photosynthesis. In earlier studies, ROS were considered as toxic by-products of aerobic pathways of the metabolism. But in recent years, concept about ROS has changed because they also participate in developmental processes of plants by acting as signaling molecules. In plants, ROS regulate many developmental processes such as cell proliferation and differentiation, programmed cell death, seed germination, gravitropism, root hair growth and pollen tube development, senescence, etc. Despite much progress, a comprehensive update of advances in the understanding of the mechanisms evoked by ROS that mediate in cell proliferation and development are fragmentry and the matter of ROS perception and the signaling cascade remains open. Therefore, keeping in view the above facts, an attempt has been made in this article to summarize the recent findings regarding updates made in the regulatory action of ROS at various plant developmental stages, which are still not well-known.

Nitric oxide alleviates silver nanoparticles (AgNps)-induced phytotoxicity in Pisum sativum seedlings

Understanding the adverse impact of nanoparticles in crop plants has emerged as one of the most interesting fields of plant research. Therefore, this study has been conducted to investigate the impact of silver nanoparticles (AgNps) on Pisium sativum seedlings. Besides this, we have also tested whether nitric oxide (NO) is capable of reducing toxicity of AgNps or not. NO has been found as one of the most fascinating molecules, capable of enhancing plant tolerance to different environmental stresses. The results of the present study showed that AgNps treatments (1000xa0μM and 3000xa0μM) significantly declined growth parameters, photosynthetic pigments and chlorophyll fluorescence of pea seedlings, which could be correlated with increased accumulation of Ag in root and shoot of pea seedlings. In contrast, addition of SNP (100xa0μM; a donor of NO) successfully ameliorated AgNp-induced adverse effects on these parameters as it reduced accumulation of Ag and repaired damaged tissues. Levels of oxidative stress markers (SOR, H2O2 and MDA) were enhanced while their levels significantly reduced under SNP addition. AgNps (1000xa0μM and 3000xa0μM) significantly stimulated the activities of superoxide dismutase (SOD) and ascorbate peroxidase (APX) while inhibited activities of glutathione reductase (GR) and dehydroascorbate reductase (DHAR). AgNps also considerably declined the total ascorbate and glutathione contents and severely damaged leaf and root anatomical structures. On the other hand, addition of SNP further increased the level of SOD, APX, GR and DHAR and significantly increased the decreased levels of total ascorbate and glutathione contents, and repaired anatomical structures. In conclusion, this study suggests that AgNps treatments adversely decreased growth, pigments and photosynthesis due to enhanced level of Ag and oxidative stress. However, SNP addition successfully ameliorates adverse impact of AgNps on pea seedlings by regulating the Ag uptake, antioxidant system, oxidative stress and anatomical structures of root and shoot.

Roles of osmoprotectants in improving salinity and drought tolerance in plants: a review

AbstractAbiotic stresses collectively are responsible for crop losses worldwide. Among various abiotic stresses, drought and salinity are the most destructive. Different strategies have been adopted for the management of these stresses. Being complex traits, conventional breeding approaches have shown less success in improving salinity and drought stress tolerance. Roles of compatible solutes in salinity and drought stress tolerance have been studied extensively. At physiological level, osmotic adjustment is an adaptive mechanism involved in drought and/or salinity tolerance and permits the maintenance of turgor pressure under stress conditions. Increasing evidences from series of in vivo and in vitro studies involving physiological, biochemical, genetic, and molecular approaches strongly suggest that osmolytes such as ammonium compounds (polyamines, glycinebetaine, b-alanine betaine, dimethyl-sulfonio propionate and choline-O-sulfate), sugars and sugar alcohols (fructan, trehalose, mannitol, d-ononitol and sorbitol) and amino acids (proline and ectoine) perform important function in adjustment of plants against salinity and drought stresses. Thus, aim of this review is to expose how to osmoprotectants detoxify adverse effect of reactive oxygen species and alleviate drought and salinity stresses. An understanding of the relationship between these two sets of parameters is needed to develop measures for mitigating the damaging impacts of salinity and drought stresses.n

Nitric oxide ameliorates zinc oxide nanoparticles phytotoxicity in wheat seedlings: Implication of the ascorbate-glutathione cycle

The present study investigates ameliorative effects of nitric oxide (NO) against zinc oxide nanoparticles (ZnONPs) phytotoxicity in wheat seedlings. ZnONPs exposure hampered growth of wheat seedlings, which coincided with reduced photosynthetic efficiency (Fv/Fm and qP), due to increased accumulation of zinc (Zn) in xylem and phloem saps. However, SNP supplementation partially mitigated the ZnONPs-mediated toxicity through the modulation of photosynthetic activity and Zn accumulation in xylem and phloem saps. Further, the results reveal that ZnONPs treatments enhanced levels of hydrogen peroxide and lipid peroxidation (as malondialdehyde; MDA) due to severely inhibited activities of the following ascorbate–glutatione cycle (AsA–GSH) enzymes: ascorbate peroxidase, glutathione reductase, monodehydroascorbate reductase and dehydroascorbate reductase, and its associated metabolites ascorbate and glutathione. In contrast to this, the addition of SNP together with ZnONPs maintained the cellular functioning of the AsA–GSH cycle properly, hence lesser damage was noticed in comparison to ZnONPs treatments alone. The protective effect of SNP against ZnONPs toxicity on fresh weight (growth) can be reversed by 2-(4carboxy-2-phenyl)-4,4,5,5-tetramethyl- imidazoline-1-oxyl-3-oxide, a NO scavenger, and thus suggesting that NO released from SNP ameliorates ZnONPs toxicity. Overall, the results of the present study have shown the role of NO in the reducing of ZnONPs toxicity through the regulation of accumulation of Zn as well as the functioning of the AsA–GSH cycle.

Hydrogen sulfide alleviates toxic effects of arsenate in pea seedlings through up-regulation of the ascorbate–glutathione cycle: Possible involvement of nitric oxide

In plants, hydrogen sulfide (H2S) is an emerging novel signaling molecule that is involved in growth regulation and abiotic stress responses. However, little is known about its role in the regulation of arsenate (As(V)) toxicity. Therefore, hydroponic experiments were conducted to investigate whether sodium hydrosulfide (NaHS; a source of H2S) is involved in the regulation of As(V) toxicity in pea seedlings. Results showed that As(V) caused decreases in growth, photosynthesis (measured as chlorophyll fluorescence) and nitrogen content, which was accompanied by the accumulation of As. As(V) treatment also reduced the activities of cysteine desulfhydrase and nitrate reductase, and contents of H2S and nitric oxide (NO). However, addition of NaHS ameliorated As(V) toxicity in pea seedlings, which coincided with the increased contents of H2S and NO. The cysteine level was higher under As(V) treatment in comparison to all other treatments (As-free; NaHS; As(V)+NaHS). The content of reactive oxygen species (ROS) and damage to lipids, proteins and membranes increased by As(V) while NaHS alleviated these effects. Enzymes of the ascorbate-glutathione cycle (AsA-GSH cycle) showed inhibition of their activities following As(V) treatment while their activities were increased by application of NaHS. The redox status of ascorbate and glutathione was disturbed by As(V) as indicated by a steep decline in their reduced/oxidized ratios. However, simultaneous NaHS application restored the redox status of the ascorbate and glutathione pools. The results of this study demonstrated that H2S and NO might both be involved in reducing the accumulation of As and triggering up-regulation of the AsA-GSH cycle to counterbalance ROS-mediated damage to macromolecules. Furthermore, the results suggest a crucial role of H2S in plant priming, and in particular for pea seedlings in mitigating As(V) stress.

Investigating the roles of ascorbate-glutathione cycle and thiol metabolism in arsenate tolerance in ridged Luffa seedlings.

The present study is aimed to investigate whether ascorbate-glutathione cycle (AsA-GSH cycle) or thiol metabolism is involved in the regulation of arsenate (AsV)-induced oxidative stress and tolerance in ridged Luffa seedlings. AsV significantly (pu2009<u20090.05) declined the growth of Luffa seedlings which was accompanied by the enhanced accumulation of As. The enhanced accumulation of As in tissues declined total protein and nitrogen contents and photosynthesis, and increased the accumulation of reactive oxygen species (ROS). The enhanced levels of ROS cause damage to lipids and proteins as indicated by the increased contents of malondialdehyde (MDA) and reactive carbonyl groups (RCG). The components of AsA-GSH cycle such as ascorbate peroxidase, monodehydroascorbate reductase, dehydroascorbate reductase, and reduced ascorbate were downregulated, while glutathione reductase and glutathione were upregulated by AsV stress. Thiol metabolic enzymes such as cysteine synthase, γ-glutamylcysteine synthetase, and glutathione synthetase, and compounds such as cysteine, glutathione, and non-protein thiols were stimulated by AsV stress. These results suggest that thiol metabolism plays a key role in mitigating AsV-mediated further damage to Luffa seedlings, while AsA-GSH cycle components had a little role in imparting AsV tolerance. The present study provides information regarding the involvement of AsA-GSH cycle and thiol metabolism in imparting AsV tolerance in Luffa. The results of this study can be utilized for AsV toxicity management in Luffa while keeping these biochemical components into consideration.

Uncovering Potential Applications of Cyanobacteria and Algal Metabolites in Biology, Agriculture and Medicine: Current Status and Future Prospects

Cyanobacteria and algae having complex photosynthetic systems can channelize absorbed solar energy into other forms of energy for production of food and metabolites. In addition, they are promising biocatalysts and can be used in the field of “white biotechnology” for enhancing the sustainable production of food, metabolites, and green energy sources such as biodiesel. In this review, an endeavor has been made to uncover the significance of various metabolites like phenolics, phytoene/terpenoids, phytols, sterols, free fatty acids, photoprotective compounds (MAAs, scytonemin, carotenoids, polysaccharides, halogenated compounds, etc.), phytohormones, cyanotoxins, biocides (algaecides, herbicides, and insecticides) etc. Apart from this, the importance of these metabolites as antibiotics, immunosuppressant, anticancer, antiviral, anti-inflammatory agent has also been discussed. Metabolites obtained from cyanobacteria and algae have several biotechnological, industrial, pharmaceutical, and cosmetic uses which have also been discussed in this review along with the emerging technology of their harvesting for enhancing the production of compounds like bioethanol, biofuel etc. at commercial level. In later sections, we have discussed genetically modified organisms and metabolite production from them. We have also briefly discussed the concept of bioprocessing highlighting the functioning of companies engaged in metabolites production as well as their cost effectiveness and challenges that are being addressed by these companies.

Retrograde signaling between plastid and nucleus: A review

Retrograde signaling, defined as the signaling events leading from the plastids to the nucleus, coordinates the expression of plastid and nuclear genes and is crucial for metabolic as well as developmental processes of the plastids. In the recent past, the identification of various components that are involved in the generation and transmission of plastid-originated retrograde signals and the regulation of nuclear gene expression has only provided a glimpse of the plastid retrograde signaling network, which remains poorly understood. The basic assumptions underlying our current understanding of retrograde signaling stayed untouched for many years. Therefore, an attempt has been made in this review article to summarize established facts and recent advances regarding various retrograde signaling pathways derived from different sources, the identification of key elements mediating retrograde signal transduction and also to give an overview of possible signaling molecules that remain to be investigated.

Reactive oxygen species signaling and stomatal movement: Current updates and future perspectives

Reactive oxygen species (ROS), a by-product of aerobic metabolism were initially studied in context to their damaging effect but recent decades witnessed significant advancements in understanding the role of ROS as signaling molecules. Contrary to earlier views, it is becoming evident that ROS production is not necessarily a symptom of cellular dysfunction but it might represent a necessary signal in adjusting the cellular machinery according to the altered conditions. Stomatal movement is controlled by multifaceted signaling network in response to endogenous and environmental signals. Furthermore, the stomatal aperture is regulated by a coordinated action of signaling proteins, ROS-generating enzymes, and downstream executors like transporters, ion pumps, plasma membrane channels, which control the turgor pressure of the guard cell. The earliest hallmarks of stomatal closure are ROS accumulation in the apoplast and chloroplasts and thereafter, there is a successive increase in cytoplasmic Ca2+ level which rules the multiple kinases activity that in turn regulates the activity of ROS-generating enzymes and various ion channels. In addition, ROS also regulate the action of multiple proteins directly by oxidative post translational modifications to adjust guard cell signaling. Notwithstanding, an active progress has been made with ROS signaling mechanism but the regulatory action for ROS signaling processes in stomatal movement is still fragmentary. Therefore, keeping in view the above facts, in this mini review the basic concepts and role of ROS signaling in the stomatal movement have been presented comprehensively along with recent highlights.