Sara Alberghini

Coexistence of predominantly nonculturable rhizobia with diverse, endophytic bacterial taxa within nodules of wild legumes

A previous analysis showed that Gammaproteobacteria could be the sole recoverable bacteria from surface-sterilized nodules of three wild species of Hedysarum. In this study we extended the analysis to eight Mediterranean native, uninoculated legumes never previously investigated regarding their root-nodule microsymbionts. The structural organization of the nodules was studied by light and electron microscopy, and their bacterial occupants were assessed by combined cultural and molecular approaches. On examination of 100 field-collected nodules, culturable isolates of rhizobia were hardly ever found, whereas over 24 other bacterial taxa were isolated from nodules. None of these nonrhizobial isolates could nodulate the original host when reinoculated in gnotobiotic culture. Despite the inability to culture rhizobial endosymbionts from within the nodules using standard culture media, a direct 16S rRNA gene PCR analysis revealed that most of these nodules contained rhizobia as the predominant population. The presence of nodular endophytes colocalized with rhizobia was verified by immunofluorescence microscopy of nodule sections using an Enterobacter-specific antibody. Hypotheses to explain the nonculturability of rhizobia are presented, and pertinent literature on legume endophytes is discussed.

Consequences of relative cellular positioning on quorum sensing and bacterial cell-to-cell communication

Cell-to-cell bacterial communication via diffusible signals is addressed and the conceptual framework in which quorum sensing is usually described is evaluated. By applying equations ruling the physical diffusion of the autoinducer molecules, one can calculate the gradient profiles that would occur either around a single cell or at the center of volumes of increasing size and increasing cell densities. Water-based matrices at 25 degrees C and viscous biofilms at colder temperatures are compared. Some basic consequences relevant for the field of microbial signalling arise. As regards induction, gradient-mixing dynamics between as little as two cells lying at a short distance appears to be sufficient for the buildup of a concentration reaching the known thresholds for quorum sensing. A straight line in which the highest concentrations occur is also created as a consequence of the gradient overlap geometry, providing an additional signal information potentially useful for chemotactic responses. In terms of whole population signalling, it is shown how the concentration perceived by a cell in the center is critically dependent not only on the cell density but also on the size of the biofilm itself. Tables and formulas for the practical prediction of N-acyl homoserine lactones concentrations at desired distances in different cell density biofilms are provided.

Quorum vs. diffusion sensing: a quantitative analysis of the relevance of absorbing or reflecting boundaries

The consequences of the boundary conditions (signal reflecting vs. signal adsorbing) on bacterial intercellular communication were addressed by a combined physics and microbiology approach. A predictive biophysical model was devised that considered system size, diffusion from given points, signal molecule decay and boundary properties. The theoretical predictions were tested with two experimental agarose-gel-based set-ups for reflecting or absorbing boundaries. N-acyl homoserine lactone (AHL) concentration profiles were measured using the Agrobacterium tumefaciens NTL4 bioassay and found to agree with model predictions. The half-life of AHL was estimated to be 7 days. The absorbing vs. reflecting nature of the boundaries drastically changed AHL concentration profiles. The effect of a single nonreflecting boundary side was equivalent to a 100-fold lower cell concentration. Results suggest that the kinetics of signal accumulation vs. signal removal and their threshold-mediated phenotypic consequences are directly linked to the properties of biofilm boundaries, stressing the relevance of the diffusion sensing component in bacterial communication.

Evidence for calcium-mediated perception of plant symbiotic signals in aequorin-expressing Mesorhizobium loti

BackgroundDuring the interaction between rhizobia and leguminous plants the two partners engage in a molecular conversation that leads to reciprocal recognition and ensures the beginning of a successful symbiotic integration. In host plants, intracellular Ca2+ changes are an integral part of the signalling mechanism. In rhizobia it is not yet known whether Ca2+ can act as a transducer of symbiotic signals.ResultsA plasmid encoding the bioluminescent Ca2+ probe aequorin was introduced into Mesorhizobium loti USDA 3147T strain to investigate whether a Ca2+ response is activated in rhizobia upon perception of plant root exudates. We find that M. loti cells respond to environmental and symbiotic cues through transient elevations in intracellular free Ca2+ concentration. Only root exudates from the homologous host Lotus japonicus induce Ca2+ signalling and downstream activation of nodulation genes. The extracellular Ca2+ chelator EGTA inhibits both transient intracellular Ca2+ increase and inducible nod gene expression, while not affecting the expression of other genes, either constitutively expressed or inducible.ConclusionThese findings indicate a newly described early event in the molecular dialogue between plants and rhizobia and highlight the use of aequorin-expressing bacterial strains as a promising novel approach for research in legume symbiosis.

Effects of conventional and transgenic Bacillus thuringiensis galleriae toxin on Exorista larvarum (Diptera: Tachinidae), a parasitoid of forest defoliating Lepidoptera

Abstract The Cry9Aa entomocidal toxin from Bacillus thuringiensis ssp. galleriae (Btg) and an epiphytic Pseudomonas sp. derivative carrying the cloned cry9Aa gene from Btg are active against the pine processionary moth Thaumetopoea pityocampa and the laboratory model species Galleria mellonella. A laboratory study was conducted to investigate the side effects of the Cry9Aa toxin and the engineered bacterium on the post-embryonic development of Exorista larvarum, a larval parasitoid of forest lepidopterous defoliators, cultured in the factitious host G. mellonella. In a first experiment, the purified toxin and the commercial Bt preparation Foray 48B induced a mortality of G. mellonella sixth-instar larvae significantly higher than that of the distilled water control. In parallel, the development of E. larvarum in this host was assessed, but no significant difference was found for any of the parasitoid parameters examined (i.e., eggs oviposited, percentage of puparia and adults and puparial weights). In subsequent experiments, cry9Aa-Pseudomonas suspension significantly increased the mortality of sixth instar G. mellonella larvae compared to untransformed Pseudomonas sp. suspension and distilled water. As to the parasitoid parameters, the cry9Aa-Pseudomonas did not significantly affect the number of oviposited eggs, percentage of puparia and puparial weights. It can be concluded that the post-embryonic development of E. larvarum was not affected by host treatment with either Cry9Aa toxin or cry9Aa-Pseudomonas under the laboratory conditions tested. Although direct effects on parasitoid performance have not been shown, indirect effects could still occur and need to be considered in future studies concerning the effects of genetically modified Bt-derivatives.

Presence of unique repeated insertion sequences in nodulation genes of Rhizobium 'hedysari'

Cloning and sequencing of DNA from a symbiotic large plasmid in Rhizobium ‘hedysari’ strain IS 123 required for its nodulation of the mediterranean legume crop Hedysarum coronarium (sulla) and complementation studies of nod- mutant derivatives led to the characterization of a 30-kb region containing common and host-specific nod genes. This DNA region also contained at least six copies of a novel insertion sequence-like structure, some of which appeared to have suffered deletions. This 0.8 kb novel element carries two 17-bp flanking inverted repeats and an open reading frame showing homology with a transposase from Staphylococcus aureus. Hybridization studies revealed that several strains of Rhizobium ‘hedysari’ carry this element in various copy number. The six copies in strain IS 123 appear clustered specifically within the pSym nod region.The significance of this IS element in rhizobia and its possible use as a probe for taxonomic and phylogenetic studies of Rhizobiaceae is addressed.

Extended plant protection by an epiphytic Pseudomonas sp. derivative carrying the cry9Aa gene from Bacillus thuringiensis galleriae against the pine processionary moth Thaumetopoea pityocampa

Abstract A strain of Pseudomonas sp. isolated from the phyllosphere of Pinus nigra in northern Italy was used for the introduction and high expression level of the gene encoding the Cry9Aa entomocidal toxin from Bacillus thuringiensis spp. galleriae. Laboratory tests showed that the resulting bacterial construct was more efficacious in terms of LC50 when compared to the purified toxin alone, against the first instar larvae of the pine processionary moth (Thaumetopoea pityocampa), suggesting that the encapsulation of the toxin within the bacterial cell may prevent the degradation of the protein. When the efficacy of the strain was compared in a long-term greenhouse experiment (102 days) with that of a commercial preparation of Btk (Foray 48B), the latter was superior in terms of total mortality, but its effectiveness decreased with time at a faster rate than that of the cry9Aa-Pseudomonas. Overall data indicate that the expression of Bt toxins in heterologous epiphytic bacteria offers potential for more efficient and persistent delivery of toxins to the target insect pests.

Methods and detection limits in tracking a genetically modifiedPseudomonas sp. released in the pine phyllosphere

A method suitable to detect the presence and follow the fate of specific bacteria released on the phyllosphere of conifer trees was devised, tested, and optimised. The procedure was set up using a biocontrol strain that had shown effectiveness and persistence in greenhouse trials against insect pests. The microorganism used is based on aPseudomonas sp., originally isolated fromPinus nigra and carries the cry9a toxin gene fromBacillus thuringiensis. In order to assess its detectability, specific primers were designed, and the most suitable protocol for DNA isolation from bacteria colonising pine needles was defined upon an experimental comparison of various methods. Different conditions of physical pre-treatments and their combinations with commercially available kits protocols were tested. The most sensitive monitoring (about 102 released cells) was achieved by a procedure based on vortexing in a suspension of glass beads followed by the use of microcolumns designed for a soil DNA extraction kit. The application can be recommended in biosafety studies of released GMMs as well as in ecological surveys of phyllosphere microbiota.

A Novel IS element is presented in Repeted Copies among the Nodulation Genes of Rhizibium ‘hedysari’

A genetic analysis of the regions required for symbiotic host plant nodulation by Rhizobium ‘hedysari’ led to the discovery of a 0.8 kb DNA element which presents the features of an insertion element and has no homology at DNA level with known sequences. The element, named ISRhl, appears to be specific for this Rhizobium species, and is present in all the strains tested in different numbers of copies. The majority of such copies are located on plasmids and the region of the nodulation and host specificity determinants seems to represent a hotspot for the insertion.