Sara Díaz

Association between cacti and nurse perennials in a heterogeneous tropical dry forest in northwestern Mexico

. The Sierra de La Laguna, Baja California Sur harbors the only tropical dry forest of the Peninsula. An inventory of the perennial plants was carried out at the eastern part of this mountain range. Plant spatial distribution was analyzed considering the species composition and vertical stratification of plant clusters in a study plot of 2 500 m2. A plant cluster was defined as a group of at least three individuals with a maximum distance between plants of 1 m. Soil physical-chemical characteristics and soil surface temperatures were compared between shade and sun conditions. The tropical dry forest of Baja California Sur presents a highly aggregated pattern of species distribution. Most of the perennial plants grow clumped, yet not all of the six cactus species recorded were significantly associated with them. Pattern analysis revealed that only Stenocereus thurberii and Ferocactus peninsulae were aggregated and associated to perennial plants. There is no replacement pattern between cacti and perennial plants. Nutrient content, including soil fertility, between shade and sun conditions does not seem to explain the patchy distribution of perennial plants, while the differences in solar radiation between these conditions appear to be restrictive and determinant of this spatial pattern of distribution.

Diversity of extremely halophilic cultivable prokaryotes in Mediterranean, Atlantic and Pacific solar salterns: Evidence that unexplored sites constitute sources of cultivable novelty

The culturable fraction of aerobic, heterotrophic and extremely halophilic microbiota retrieved from sediment and brine samples of eight sampling sites in the Mediterranean, Canary Islands and Chile was studied by means of a tandem approach combining large-scale cultivation, MALDI-TOF MS targeting whole cell biomass, and phylogenetic reconstruction based on 16S rRNA gene analysis. The approach allowed the identification of more than 4200 strains and a comparison between different sampling sites. The results indicated that the method constituted an excellent tool for the discovery of taxonomic novelty. Four new genera and nine new species could be identified within the archaeal family Halobacteriaceae, as well as one new bacterial species, and a representative of Salinibacter ruber phylotype II, a group that had been refractory to isolation for the last fifteen years. Altogether, the results indicated that in order to provide better yields for the retrieval of novel taxa from the environment, performance of non-redundant environment sampling is recommended together with the screening of large sets of strains.

Crohn associated microbial communities associated to colonic mucosal biopsies in patients of the western Mediterranean.

Next generation sequencing approaches allow the retrieval of several orders of magnitude larger numbers of amplified single sequences in 16S rRNA diversity surveys than classical methods. However, the sequences are only partial and thus lack sufficient resolution for a reliable identification. The OPU approach used here, based on a tandem combination of high quality 454 sequences (mean >500 nuc) applying strict OTU thresholds, and phylogenetic inference based on parsimony additions to preexisting trees, seemed to improve the identification yields at the species and genus levels. A total of thirteen biopsies of Crohn-diagnosed patients (CD) and seven healthy controls (HC) were studied. In most of the cases (73%), sequences were affiliated to known species or genera and distinct microbial patterns could be distinguished among the CD subjects, with a common depletion of Clostridia and either an increased presence of Bacteroidetes (CD1) or an anomalous overrepresentation of Proteobacteria (CD2). Faecalibacterium prausnitzii presence was undetectable in CD, whereas Bacteroides vulgatus-B. dorei characterized HC and some CD groups. Altogether, the results showed that a microbial composition with predominance of Clostridia followed by Bacteroidetes, with F. prausnitzii and B. vulgatus-B. dorei as major key bacteria, characterized what could be considered a balanced structure in HC. The depletion of Clostridia seemed to be a common trait in CD.

AN INTERANNUAL CLIMATOLOGICAL ARIDITY SERIES FOR THE SIERRA DE LA LAGUNA, B.C.S. MEXICO

The Sierra de La Laguna is a group of mountains in the south of the Baja California Peninsula that, because of their height, show marked climatic differences. The life forms there are different from the rest of the Peninsula and the area is the site of many ecological studies. The objective of this paper is to construct a regional climatic series that can be useful for detecting annual dry and wet periods. An aridity index is calculated according to Martonne, using precipitation and temperature data from nine meteorological stations in the middle and lower ranges of the Sierra. When an auto-correction and Fourier analysis of the resultant series is made, a tendency to less aridity is observed with a fundamental frequency of 24 years, which approximates conformance to the double cycle of sunspots.

Genomic comparison between members of the Salinibacteraceae family, and description of a new species of Salinibacter (Salinibacter altiplanensis sp. nov.) isolated from high altitude hypersaline environments of the Argentinian Altiplano

The application of tandem MALDI-TOF MS screening with 16S rRNA gene sequencing of selected isolates has been demonstrated to be an excellent approach for retrieving novelty from large-scale culturing. The application of such methodologies in different hypersaline samples allowed the isolation of the culture-recalcitrant Salinibacter ruber second phylotype (EHB-2) for the first time, as well as a new species recently isolated from the Argentinian Altiplano hypersaline lakes. In this study, the genome sequences of the different species of the phylum Rhodothermaeota were compared and the genetic repertoire along the evolutionary gradient was analyzed together with each intraspecific variability. Altogether, the results indicated an open pan-genome for the family Salinibacteraceae, as well as the codification of relevant traits such as diverse rhodopsin genes, CRISPR-Cas systems and spacers, and one T6SS secretion system that could give ecological advantages to an EHB-2 isolate. For the new Salinibacter species, we propose the name Salinibacter altiplanensis sp. nov. (the designated type strain is AN15T=CECT 9105T=IBRC-M 11031T).