Satoshi Yokojima

Two distinct amyloid β-protein (Aβ) assembly pathways leading to oligomers and fibrils identified by combined fluorescence correlation spectroscopy, morphology and toxicity analyses

Nonfibrillar assemblies of amyloid β-protein (Aβ) are considered to play primary roles in Alzheimer disease (AD). Elucidating the assembly pathways of these specific aggregates is essential for understanding disease pathogenesis and developing knowledge-based therapies. However, these assemblies cannot be monitored in vivo, and there has been no reliable in vitro monitoring method at low protein concentration. We have developed a highly sensitive in vitro monitoring method using fluorescence correlation spectroscopy (FCS) combined with transmission electron microscopy (TEM) and toxicity assays. Using Aβ labeled at the N terminus or Lys16, we uncovered two distinct assembly pathways. One leads to highly toxic 10–15-nm spherical Aβ assemblies, termed amylospheroids (ASPDs). The other leads to fibrils. The first step in ASPD formation is trimerization. ASPDs of ∼330 kDa in mass form from these trimers after 5 h of slow rotation. Up to at least 24 h, ASPDs remain the dominant structures in assembly reactions. Neurotoxicity studies reveal that the most toxic ASPDs are ∼128 kDa (∼32-mers). In contrast, fibrillogenesis begins with dimer formation and then proceeds to formation of 15–40-nm spherical intermediates, from which fibrils originate after 15 h. Unlike ASPD formation, the Lys16-labeled peptide disturbed fibril formation because the Aβ16–20 region is critical for this final step. These differences in the assembly pathways clearly indicated that ASPDs are not fibril precursors. The method we have developed should facilitate identifying Aβ assembly steps at which inhibition may be beneficial.

One-color reversible control of photochromic reactions in a diarylethene derivative: three-photon cyclization and two-photon cycloreversion by a near-infrared femtosecond laser pulse at 1.28 μm.

One-color control of colorization/decolorization reactions of diarylethene molecules was attained by using nonresonant high-order multiphoton absorption processes with a near-infrared (NIR) femtosecond laser pulse at 1.28 μm with 35 fs full width at half-maximum (fwhm). The intensity of a rather weak laser pulse (<1 nJ/pulse) can induce the simultaneous three-photon absorption leading to the colorization, while much weaker intensity induces two-photon absorption resulting in the decolorization. The spatial patterning concomitant with higher-order multiphoton absorption processes was also demonstrated.

Selective metal deposition on photoswitchable molecular surfaces.

We report here a novel phenomenon: selective metal deposition on photoswitchable diarylethene (DAE) surfaces. Magnesium vapor was deposited by vacuum evaporation on the colored DAE but not on the uncolored surface. The selective deposition originates in the change of the glass transition temperature of the amorphous DAE film resulting from photoisomerization and therefore from changes of surface molecular motion. We clarified that Mg atoms on the uncolored surface actively migrated on the surface and were desorbed from the surface. The possibility of depositing other metals is also discussed. Light-controllable metal-integrated deposition was demonstrated as a new function of the photoswitchable molecular surfaces. This study reveals new features of the photoswitchable molecular surfaces, and their potential suggests bright prospects for future applications in organic electronics.

Reversible Photocontrol of Surface Wettability between Hydrophilic and Superhydrophobic Surfaces on an Asymmetric Diarylethene Solid Surface

By alternate UV and visible light irradiation, reversible topographical changes were observed on a newly synthesized diarylethene microcrystalline surface between the rough crystalline surface of an open-ring isomer and flat eutectic surfaces. The contact angle changes of a water droplet between 80° and 150° and peak intensities changes of the open-ring isomer in XRD patterns within 2 h of repeating cycle were observed. The results indicated that reversibly photogenerated rod-shaped crystals on the surface were produced based on the lattice of the open-ring isomer crystals in the subphase.

Theoretical Explanation of the Lotus Effect: Superhydrophobic Property Changes by Removal of Nanostructures from the Surface of a Lotus Leaf.

Theoretical study is presented on the wetting behaviors of water droplets over a lotus leaf. Experimental results are interpreted to clarify the trade-offs among the potential energy change, the local pinning energy, and the adhesion energy. The theoretical parameters, calculated from the experimental results, are used to qualitatively explain the relations among surface fractal dimension, surface morphology, and dynamic wetting behaviors. The surface of a lotus leaf, which shows the superhydrophobic lotus effect, was dipped in ethanol to remove the plant waxes. As a result, the lotus effect is lost. The contact angle of a water drop decreased dramatically from 161° of the original surface to 122°. The water droplet was pinned on the surface. From the fractal analysis, the fractal region of the original surface was divided into two regions: a smaller-sized roughness region of 0.3-1.7 μm with D of 1.48 and a region of 1.7-19 μm with D of 1.36. By dipping the leaf in ethanol, the former fractal region, characterized by wax tubes, was lost, and only the latter large fractal region remained. The lotus effect is attributed to a surface structure that is covered with needle-shaped wax tubes, and the remaining surface allows invasion of the water droplet and enlarges the interaction with water.

Photo- and electro-chromic organometallics with dithienylethene (DTE) linker, L2CpM-DTE-MCpL2: Dually stimuli-responsive molecular switch

Photochromic dithienylethene (DTE) derivatives, M-DTE-M (M: M(η(5)-C(5)R(5))L(2); M = Fe, Ru; R = H, Me; L = CO, phosphine), with direct σ-bonded, redox-active organometallic attachments are prepared and their response to photo- and electro-chemical stimuli as well as wire-like and switching performance has been investigated. These properties turn out to be dependent on the metal and the auxiliary ligands. The DTE complexes with the MCp(CO)(2) and RuCp(CO)(PPh(3)) fragments undergo reversible photochemical ring-closing and -opening of the DTE moiety upon UV and visible-light irradiation, respectively, whereas the other FeCp(CO)(PPh(3)) and Fe(η(5)-C(5)R(5))(dppe) derivatives are virtually inert with respect to the photochemical ring closing process. Electrochemical analysis of the DTE complexes reveals that 2e-oxidation of the open isomer O also brings about the ring closure of the DTE moiety to afford the Fischer-carbene-type, dicationic closed derivatives C(2+) with the π-conjugated system different from that in the neutral ones C obtained photochemically. Subsequent reduction of C(2+) furnishes the neutral closed species C. Thus the ring closure is mediated not only by the conventional photochemical process but also by the sequential oxidation-reduction process, i.e. the organometallic DTE complexes are found to be dually photo- and electro-chromic. It is notable that the oxidative procedures are viable for the photochemically inert derivatives. Wire-like and switching performance has been evaluated on the basis of the comproportionation constant K(C) for the 1e-oxidized mixed valence monocationic species obtained by the electrochemical analysis and the switching factor SF (K(C)(C)/K(C)(O)), respectively. The K(C)(C) (7.5 × 10(4)) and SF values (5.4 × 10(3)) for phosphine-substituted derivatives are significantly large, as a result of the distinct π-conjugated systems of the DTE moieties involved in the O- (with cross-conjugation) and C-forms (fully conjugated). Compared to the previously reported acetylide-type complexes bridged by a DTE linker, (dppe)Cp*M-C≡C-DTE-C≡C-MCp*(dppe), both parameters have been significantly improved by factors of ~150. Time-dependent DFT analysis for the photochemical processes has revealed that the ring-closing process occurs not only via the ligand centered singlet excited state but also via the ligand centered triplet state resulting from energy transfer processes between the ligand- and metal-centered excited states and that this proposed mechanism can account for the photochemical reactivity of ruthenium complexes superior to that of the corresponding iron derivatives.

Analytic second derivatives of the energy in the fragment molecular orbital method

We developed the analytic second derivatives of the energy for the fragment molecular orbital (FMO) method. First we derived the analytic expressions and then introduced some approximations related to the first and second order coupled perturbed Hartree-Fock equations. We developed a parallel program for the FMO Hessian with approximations in GAMESS and used it to calculate infrared (IR) spectra and Gibbs free energies and to locate the transition states in SN2 reactions. The accuracy of the Hessian is demonstrated in comparison to ab initio results for polypeptides and a water cluster. By using the two residues per fragment division, we achieved the accuracy of 3 cm(-1) in the reduced mean square deviation of vibrational frequencies from ab initio for all three polyalanine isomers, while the zero point energy had the error not exceeding 0.3 kcal/mol. The role of the secondary structure on IR spectra, zero point energies, and Gibbs free energies is discussed.

Photochromism of a Diarylethene Having an Azulene Ring

Diarylethene derivatives incorporating an azulene ring at the ethene moiety were synthesized. One derivative having thiazole rings showed the expected coloration reaction by excitation at 313 nm (to a higher singlet state) but not when excited at 635 nm (S(0) to S(1) excitation). The system demonstrates that the cyclization reaction can be controlled by selective excitation at different wavelengths of the absorption spectrum. On the other hand, another derivative having thiophene rings did not show any photochromism. The results clearly show the importance of the coplanarity of the system for the photoisomerization.

Unrestricted Hartree-Fock based on the fragment molecular orbital method: Energy and its analytic gradient

A consideration of the surrounding environment is necessary for a meaningful analysis of the reaction activity in large molecular systems. We propose an approach to perform unrestricted Hartree-Fock (UHF) calculations within the framework of the fragment molecular orbital (FMO) method (FMO-UHF) to study large systems with unpaired electrons. Prior to an energy analysis one has to optimize geometry, which requires an accurate analytic energy gradient. We derive the FMO-UHF energy and its analytic gradient and implement them into GAMESS. The performance of FMO-UHF is evaluated for a solvated organic molecule and a solvated metal complex, as well as for the active part of a protein, in terms of energy, gradient, and geometry optimization.

Formation mechanism of fractal structures on wax surfaces with reference to their super water-repellency

Alkylketene dimer (AKD: a kind of wax) spontaneously forms a fractal structure and its surfaces show super water-repellency (the contact angle = 174°). However, the formation mechanism of the fractal surfaces of AKD is still unclear. In this work, surface structures, wettability and phase behaviors of various waxes have been investigated in order to understand the mechanism for spontaneous formation of super water-repellent fractal surfaces. We have found an empirical general rule without any exceptions at least for the wax samples tested. First, the wax must form a meta-stable crystalline phase when solidified from its melt. Then, the super water-repellent fractal surfaces form spontaneously during the phase transition from a meta-stable to a stable crystalline form. The tempering method also supported the above rule for the waxes showing the fractal structure formation on their surfaces.