Sebastian Zaunseder

Optimization of ECG Classification by Means of Feature Selection

This study tackles the ECG classification problem by means of a methodology, which is able to enhance classification performance while simultaneously reducing the computational resources, making it specially adequate for its application in the improvement of ambulatory settings. For this purpose, the sequential forward floating search (SFFS) algorithm is applied with a new criterion function index based on linear discriminants. This criterion has been devised specifically to be a quality indicator in ECG arrhythmia classification. Based on this measure, a comprehensive feature set is analyzed with the SFFS algorithm, and the most suitable subset returned is additionally evaluated with a multilayer perceptron (MLP) to assess the robustness of the model. Aiming at obtaining meaningful estimates of the real-world performance and facilitating comparison with similar studies, the present contribution follows the Association for the Advancement of Medical Instrumentation standard EC57:1998 and the same interpatient division scheme used in several previous studies. Results show that by applying the proposed methods, the performance obtained in similar studies under the same constraints can be exceeded, while keeping the requirements suitable for ambulatory monitoring.

A practical guide to non-invasive foetal electrocardiogram extraction and analysis.

Non-Invasive foetal electrocardiography (NI-FECG) represents an alternative foetal monitoring technique to traditional Doppler ultrasound approaches, that is non-invasive and has the potential to provide additional clinical information. However, despite the significant advances in the field of adult ECG signal processing over the past decades, the analysis of NI-FECG remains challenging and largely unexplored. This is mainly due to the relatively low signal-to-noise ratio of the FECG compared to the maternal ECG, which overlaps in both time and frequency. This article is intended to be used by researchers as a practical guide to NI-FECG signal processing, in the context of the above issues. It reviews recent advances in NI-FECG research including: publicly available databases, NI-FECG extraction techniques for foetal heart rate evaluation and morphological analysis, NI-FECG simulators and the methodology and statistics for assessing the performance of the extraction algorithms. Reference to the most recent work is given, recent findings are highlighted in the form of intermediate summaries, references to open source code and publicly available databases are provided and promising directions for future research are motivated. In particular we emphasise the need and specifications for building a new open reference database of NI-FECG signals, and the need for new algorithms to be benchmarked on the same database, employing the same evaluation statistics. Finally we motivate the need for research in NI-FECG to address morphological analysis, since this represent one of the most promising avenues for this foetal monitoring modality.

Two-Dimensional Warping for One-Dimensional Signals—Conceptual Framework and Application to ECG Processing

We propose a novel method for evaluating the similarity between two 1d patterns. Our method, referred to as two-dimensional signal warping (2DSW), extends the basic ideas of known warping techniques such as dynamic time warping and correlation optimized warping. By employing two-dimensional piecewise stretching 2DSW is able to take into account inhomogeneous variations of shapes. We apply 2DSW to ECG recordings to extract beat-to-beat variability in QT intervals (QTV) that is indicative of ventricular repolarization lability and typically characterised by a low signal-to-noise ratio. Simulation studies show high robustness of our approach in presence of typical ECG artefacts. Comparison of short-term ECG recorded in normal subjects versus patients with myocardial infarction (MI) shows significantly increased QTV in patients (normal subject 2.36 ms ± 1.05 ms vs. MI patients 5.94 ms ± 5.23 ms (mean ± std), ). Evaluation of a standard QT database shows that 2DSW allows highly accurate tracking of QRS-onset and T-end. In conclusion, the two-dimensional warping approach introduced here is able to detect subtle changes in noisy quasi-periodic biomedical signals such as ECG and may have diagnostic potential for measuring repolarization lability in MI patients. In more general terms, the proposed method provides a novel means for morphological characterization of 1d signals.

An ECG simulator for generating maternal-foetal activity mixtures on abdominal ECG recordings

Accurate foetal electrocardiogram (FECG) morphology extraction from non-invasive sensors remains an open problem. This is partly due to the paucity of available public databases. Even when gold standard information (i.e derived from the scalp electrode) is present, the collection of FECG can be problematic, particularly during stressful or clinically important events.In order to address this problem we have introduced an FECG simulator based on earlier work on foetal and adult ECG modelling. The open source foetal ECG synthetic simulator, fecgsyn, is able to generate maternal-foetal ECG mixtures with realistic amplitudes, morphology, beat-to-beat variability, heart rate changes and noise. Positional (rotation and translation-related) movements in the foetal and maternal heart due to respiration, foetal activity and uterine contractions were also added to the simulator.The simulator was used to generate some of the signals that were part of the 2013 PhysioNet Computing in Cardiology Challenge dataset and has been posted on Physionet.org (together with scripts to generate realistic scenarios) under an open source license. The toolbox enables further research in the field and provides part of a standard for industry and regulatory testing of rare pathological scenarios.

ROI Selection for Remote Photoplethysmography

Camera-based remote photoplethysmography (rPPG) is a technique that can be used to measure vital signs contactlessly. In order to optimize the extraction of photoplethysmographic signals from video sequences, we investigate the spatial dependence of the photoplethysmographic signal. For an evaluation of the suitability of various regions of interest for rPPG measurements, we conducted a study on 20 healthy subjects. We analysed the videos using a refined pulse amplitude mapping approach. Our results show that the signal-to-noise ratio of rPPG signals can be improved by limiting the region of interest to certain regions of the face.

An open-source framework for stress-testing non-invasive foetal ECG extraction algorithms.

Over the past decades, many studies have been published on the extraction of non-invasive foetal electrocardiogram (NI-FECG) from abdominal recordings. Most of these contributions claim to obtain excellent results in detecting foetal QRS (FQRS) complexes in terms of location. A small subset of authors have investigated the extraction of morphological features from the NI-FECG. However, due to the shortage of available public databases, the large variety of performance measures employed and the lack of open-source reference algorithms, most contributions cannot be meaningfully assessed. This article attempts to address these issues by presenting a standardised methodology for stress testing NI-FECG algorithms, including absolute data, as well as extraction and evaluation routines. To that end, a large database of realistic artificial signals was created, totaling 145.8 h of multichannel data and over one million FQRS complexes. An important characteristic of this dataset is the inclusion of several non-stationary events (e.g. foetal movements, uterine contractions and heart rate fluctuations) that are critical for evaluating extraction routines. To demonstrate our testing methodology, three classes of NI-FECG extraction algorithms were evaluated: blind source separation (BSS), template subtraction (TS) and adaptive methods (AM). Experiments were conducted to benchmark the performance of eight NI-FECG extraction algorithms on the artificial database focusing on: FQRS detection and morphological analysis (foetal QT and T/QRS ratio). The overall median FQRS detection accuracies (i.e. considering all non-stationary events) for the best performing methods in each group were 99.9% for BSS, 97.9% for AM and 96.0% for TS. Both FQRS detections and morphological parameters were shown to heavily depend on the extraction techniques and signal-to-noise ratio. Particularly, it is shown that their evaluation in the source domain, obtained after using a BSS technique, should be avoided. Data, extraction algorithms and evaluation routines were released as part of the fecgsyn toolbox on Physionet under an GNU GPL open-source license. This contribution provides a standard framework for benchmarking and regulatory testing of NI-FECG extraction algorithms.

Automated identification of cardiac signals after blind source separation for camera-based photoplethysmography

In the field of camera-based photoplethysmography the application of blind source separation (BSS) techniques has extensively stressed to cope with frequently occurring artifacts and noise. Although said techniques can help to extract the cardiac component from a mixture of input sources, permutation indeterminacy inherit to BSS techniques often introduces inaccuracies or requires manual intervention. The current contribution focuses on methods to automatically select the cardiac component from the output of BSS techniques applied to camera-based photoplethysmograms. To that end, we propose simple Markov models to describe and subsequently identify cardiac components. It is shown that good results can be obtained by combining different simple Markov models.

Entropy Analysis of RR and QT Interval Variability during Orthostatic and Mental Stress in Healthy Subjects

Autonomic activity affects beat-to-beat variability of heart rate and QT interval. The aim of this study was to explore whether entropy measures are suitable to detect changes in neural outflow to the heart elicited by two different stress paradigms. We recorded short-term ECG in 11 normal subjects during an experimental protocol that involved head-up tilt and mental arithmetic stress and computed sample entropy, cross-sample entropy and causal interactions based on conditional entropy from RR and QT interval time series. Head-up tilt resulted in a significant reduction in sample entropy of RR intervals and cross-sample entropy, while mental arithmetic stress resulted in a significant reduction in coupling directed from RR to QT. In conclusion, measures of entropy are suitable to detect changes in neural outflow to the heart and decoupling of repolarisation variability from heart rate variability elicited by orthostatic or mental arithmetic stress.

T Wave Amplitude Correction of QT Interval Variability for Improved Repolarization Lability Measurement

Objectives: The inverse relationship between QT interval variability (QTV) and T wave amplitude potentially confounds QT variability assessment. We quantified the influence of the T wave amplitude on QTV in a comprehensive dataset and devised a correction formula. Methods: Three ECG datasets of healthy subjects were analyzed to model the relationship between T wave amplitude and QTV. To derive a generally valid correction formula, linear regression analysis was used. The proposed correction formula was applied to patients enrolled in the Evaluation of Defibrillator in Non-Ischemic Cardiomyopathy Treatment Evaluation trial (DEFINITE) to assess the prognostic significance of QTV for all-cause mortality in patients with non-ischemic dilated cardiomyopathy. Results: A strong inverse relationship between T wave amplitude and QTV was demonstrated, both in healthy subjects (R2 = 0.68, p < 0.001) and DEFINITE patients (R2 = 0.20, p < 0.001). Applying the T wave amplitude correction to QTV achieved 2.5-times better group discrimination between patients enrolled in the DEFINITE study and healthy subjects. Kaplan-Meier estimator analysis showed that T wave amplitude corrected QTVi is inversely related to survival (p < 0.01) and a significant predictor of all-cause mortality. Conclusion: We have proposed a simple correction formula for improved QTV assessment. Using this correction, predictive value of QTV for all-cause mortality in patients with non-ischemic cardiomyopathy has been demonstrated.

Camera-based photoplethysmography in critical care patients

BACKGROUND Camera-based photoplethysmography (cbPPG) is an optical measurement technique that reveals pulsatile blood flow in cutaneous microcirculation from a distance. cbPPG has been shown to reflect pivotal haemodynamic events like cardiac ejection in healthy subjects. In addition, it provides valuable insight into intrinsic microcirculatory regulation as it yields dynamic, two-dimensional perfusion maps. In this study, we evaluate the feasibility of a clinical cbPPG application in critical care patients. METHODS A mobile camera set-up to record faces of patients at the bed site was constructed. Videos were made during the immediate recovery after cardiac surgery under standard critical care conditions and were processed offline. Major motion artefacts were detected using an optical flow technique and suitable facial regions were manually annotated. cbPPG signals were highpass filtered and Fourier spectra out of consecutive 10s signal segments calculated for heart rate detection. Signal-to-noise ratios (SNR) of the Fourier spectra were derived as a quality measure. Reference data of vital parameters were synchronously acquired from the bed site monitoring system. RESULTS Seventy patient videos of an average time of 28.6±2.8 min were analysed. Heart rate (HR) was detected within a±5 bpm range compared to reference in 83% of total recording time. Low SNR and HR detection failure were mostly, but not exclusively, attributed to non-physiological events like patient motion, interventions or sudden changes of illumination. SNR was reduced by low arterial blood pressure, whereas no impact of other perioperative or disease-related parameters was identified. CONCLUSION Cardiac ejection is detectable by cbPPG under pathophysiologic conditions of cardiovascular disease and perioperative medicine. cbPPG measurements can be seamlessly integrated into the clinical work flow of critical care patients.