Seiichi Uchimura

Identification of a strong binding site for kinesin on the microtubule using mutant analysis of tubulin.

The kinesin‐binding site on the microtubule has not been identified because of the technical difficulties involved in the mutant analyses of tubulin. Exploiting the budding yeast expression system, we succeeded in replacing the negatively charged residues in the α‐helix 12 of β‐tubulin with alanine and analyzed their effect on kinesin‐microtubule interaction in vitro. The microtubule gliding assay showed that the affinity of the microtubules for kinesin was significantly reduced in E410A, D417A, and E421A, but not in E412A mutant. The unbinding force measurement revealed that in the former three mutants, the kinesin‐microtubule interaction in the adenosine 5′‐[β,γ‐imido]triphosphate state (AMP‐PNP state) became less stable when a load was imposed towards the microtubule minus end. In parallel with this decreased stability, the stall force of kinesin was reduced. Our results implicate residues E410, D417, and E421 as crucial for the kinesin‐microtubule interaction in the strong binding state, thereby governing the size of kinesin stall force.

Key residues on microtubule responsible for activation of kinesin ATPase

Microtubule (MT) binding accelerates the rate of ATP hydrolysis in kinesin. To understand the underlying mechanism, using charged‐to‐alanine mutational analysis, we identified two independent sites in tubulin, which are critical for kinesin motility, namely, a cluster of negatively charged residues spanning the helix 11–12 (H11–12) loop and H12 of α‐tubulin, and the negatively charged residues in H12 of β‐tubulin. Mutation in the α‐tubulin‐binding site results in a deceleration of ATP hydrolysis (kcat), whereas mutation in the β‐tubulin‐binding site lowers the affinity for MTs (K0.5MT). The residue E415 in α‐tubulin seems to be important for coupling MT binding and ATPase activation, because the mutation at this site results in a drastic reduction in the overall rate of ATP hydrolysis, largely due to a deceleration in the reaction of ADP release. Our results suggest that kinesin binding at a region containing α‐E415 could transmit a signal to the kinesin nucleotide pocket, triggering its conformational change and leading to the release of ADP.

Effects of N-Glycosylation and Inositol on the ER Stress Response in Yeast Saccharomyces cerevisiae

IRE1 and HAC1 are essential for the unfolded protein response in the endoplasmic reticulum (ER). IRE1- and HAC1-disruptants require high concentrations of inositol for its normal growth. The ALG6, ALG8, and ALG10 genes encode the glucosyltransferases necessary for the completion of the synthesis of the lipid-linked oligosaccharide used for the asparagine-linked glycosylation of proteins in that order. Here we show that, given a combination of the hac1 defect with a disruption of ALG6, ALG8, and ALG10, no strains grow on inositol-free medium. However, the growth defect of the hac1-alg10 double disrupted was partially, but significantly, suppressed by the addition of inositol to the medium. These results indicate that inositol, according to the numbers of glucose residues in the oligosaccharide, plays an important role in the stress response and quality control of glycoproteins in the ER.

KIF1A Repeats Cycle of ‘FREE Diffusion’ and ‘SPECIFIC Binding’ during Weak Binding State

The nature of intermolecular interaction between motor and cytoskeletal filament during the weak binding state is not fully understood. In the case of kinesin, while structural analyses revealed that kinesin binds to a specific binding site on tubulin, motility data suggested that kinesin undergoes diffusion, searching for its next binding site. To understand how specific binding and diffusion are compatible in a single ADP state, we analyzed the motion of the single-headed kinesin KIF1A on various mutant microtubules (MTs) in the presence of ADP, using the single molecule motility assay.We prepared two series of mutant MTs. The first is a series with increased/decreased negative charges at the C-terminal tails (CTTs) of tubulin, reported to be indispensable for the weak binding of KIF1A to the MT (Okada et al., 2000). The second is a series of charged-to-alanine mutants in the H11-12 loop and H12 of tubulin (α-E415, -E416, -E418, -E421 and β-E410, -D417), found to be critical for kinesin motility and ATPase (Uchimura et al., 2010). The analyses of KIF1A movement showed that a reduction of negative charges in CTTs leads to a reduction in both the duration of interaction and the diffusion length of KIF1A, yet the diffusion constant was not greatly changed. In contrast, in most of the charged-to-alanine tubulin mutants, the diffusion constant of KIF1A increased and the duration shortened, but the diffusion length was unaffected. These results indicate that KIF1A-MT interaction in the ADP state can be modeled as an equilibrium between two substates: a dynamic ‘diffusion state’ and a static ‘binding state’. While CTTs stabilize the former, the critical residues in the H11-12 loop and H12 of tubulin stabilize the latter. This model is applicable to dimeric kinesin.

The Force Production by the Depolymerization Activity of MCAK

During cell division the replicating chromosomes must be precisely arranged and separated polewards. Though many cellular processes involving motility require force generation by motor proteins, the chromosome movement is suggested to use the energy stored at plus ends of the microtubules to which kinetochores are attached. This energy is converted into the chromosome movement via passive couplers, whereas the role of the microtubule-based motors is supposed to be limited to the regulation of microtubule dynamics. The microtubule-depolymerizing kinesins, such as mitotic centromere-associated kinesin (MCAK), which is a founding member of kinesin-13 family, facilitate microtubule dynamics in a spindle and are required for the chromosome congression and segregation; however, the key question - whether the depolymerizing activity generates tension to pull the chromosomes - has remained unsolved. To probe the link between the generation of tension and the microtubule-disassembling activity of MCAK, we developed a single-molecule assay to examine the interaction between a single microtubule and multiple MCAK molecules under the fluorescence microscope equipped with the dual-trap optical tweezers. Here we show that the microtubule-disassembling activity of MCAK generates significant tension. The depolymerization force increases with the number of interacting MCAK molecules. These results provide a simple and attractive model for the generation of the driving force and the regulation of chromosome segregation in a spindle by the activity of MCAK.