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Featured researches published by Shannon Thyne.


American Journal of Respiratory and Critical Care Medicine | 2013

Early-Life Air Pollution and Asthma Risk in Minority Children. The GALA II and SAGE II Studies

Katherine K. Nishimura; Joshua M. Galanter; Lindsey A. Roth; Sam S. Oh; Neeta Thakur; Elizabeth A. Nguyen; Shannon Thyne; Harold J. Farber; Denise Serebrisky; Rajesh Kumar; Emerita Brigino-Buenaventura; Adam Davis; Michael LeNoir; Kelley Meade; William Rodriguez-Cintron; Pedro C. Avila; Luisa N. Borrell; Kirsten Bibbins-Domingo; Jose R. Rodriguez-Santana; Śaunak Sen; Fred Lurmann; John R. Balmes; Esteban G. Burchard

RATIONALE Air pollution is a known asthma trigger and has been associated with short-term asthma symptoms, airway inflammation, decreased lung function, and reduced response to asthma rescue medications. OBJECTIVES To assess a causal relationship between air pollution and childhood asthma using data that address temporality by estimating air pollution exposures before the development of asthma and to establish the generalizability of the association by studying diverse racial/ethnic populations in different geographic regions. METHODS This study included Latino (n = 3,343) and African American (n = 977) participants with and without asthma from five urban regions in the mainland United States and Puerto Rico. Residential history and data from local ambient air monitoring stations were used to estimate average annual exposure to five air pollutants: ozone, nitrogen dioxide (NO₂), sulfur dioxide, particulate matter not greater than 10 μm in diameter, and particulate matter not greater than 2.5 μm in diameter. Within each region, we performed logistic regression to determine the relationship between early-life exposure to air pollutants and subsequent asthma diagnosis. A random-effects model was used to combine the region-specific effects and generate summary odds ratios for each pollutant. MEASUREMENTS AND MAIN RESULTS After adjustment for confounders, a 5-ppb increase in average NO₂ during the first year of life was associated with an odds ratio of 1.17 for physician-diagnosed asthma (95% confidence interval, 1.04-1.31). CONCLUSIONS Early-life NO₂ exposure is associated with childhood asthma in Latinos and African Americans. These results add to a growing body of evidence that traffic-related pollutants may be causally related to childhood asthma.


Human Genetics | 2006

β2-Adrenergic receptor polymorphisms: pharmacogenetic response to bronchodilator among African American asthmatics

Hui-Ju Tsai; Nishat Shaikh; Jennifer Kho; Natalie Battle; Mariam Naqvi; Daniel Navarro; Henry Matallana; Craig M. Lilly; Celeste S. Eng; Gunjan Kumar; Shannon Thyne; H. George Watson; Kelley Meade; Michael LeNoir; Shweta Choudhry; Esteban G. Burchard

Abstractβ2-Adrenergic receptor (β2AR) gene polymorphisms have been reported to be associated with various asthma-related traits in different racial/ethnic populations. However, it is unknown whether β2AR genetic variants are associated with asthma in African Americans. In this study, we have examined whether there is association between β2AR genetic variants and asthma in African Americans. We have recruited 264 African American asthmatic subjects and 176 matched healthy controls participating in the Study of African Americans, Asthma, Genes and Environments (SAGE). We genotyped seven known and recently identified β2AR SNP variants, then tested genotype and haplotype association of asthma-related traits with the β2AR SNPs in our African American cohort with adjustment of confounding effect due to admixture background and environmental risk factors. We found a significant association of the SNP −47 (Arg-19Cys) polymorphism with ΔFEF25–75, a measure of bronchodilator drug responsiveness, in African American asthmatics after correction for multiple testing (P=0.001). We did not observe association of the SNP +46 (Arg16Gly) variant with asthma disease diagnosis and asthma-related phenotypes. In contrast to previous results between the Arg16Gly variant and traits related to bronchodilator responsiveness, our results indicate that the Arg-19Cys polymorphism in β upstream peptide may play an important role in bronchodilator drug responsiveness in African American subjects. Our findings highlight the importance of investigating genetic risk factors for asthma in different populations.


American Journal of Respiratory and Critical Care Medicine | 2013

Childhood Obesity and Asthma Control in the GALA II and SAGE II Studies

Luisa N. Borrell; Elizabeth A. Nguyen; Lindsey A. Roth; Sam S. Oh; Haig Tcheurekdjian; Saunak Sen; Adam Davis; Harold J. Farber; Pedro C. Avila; Emerita Brigino-Buenaventura; Michael LeNoir; Fred Lurmann; Kelley Meade; Denise Serebrisky; William Rodriguez-Cintron; Rajesh Kumar; Jose R. Rodriguez-Santana; Shannon Thyne; Esteban G. Burchard

RATIONALE Obesity is associated with increased asthma morbidity, lower drug responsiveness to inhaled corticosteroids, and worse asthma control. However, most prior investigations on obesity and asthma control have not focused on pediatric populations, considered environmental exposures, or included minority children. OBJECTIVES To examine the association between body mass index categories and asthma control among boys and girls; and whether these associations are modified by age and race/ethnicity. METHODS Children and adolescents ages 8-19 years (n = 2,174) with asthma were recruited from the Genes-environments and Admixture in Latino Americans (GALA II) Study and the Study of African Americans, Asthma, Genes, and Environments (SAGE II). Ordinal logistic regression was used to estimate odds ratios (OR) and their confidence intervals (95% CI) for worse asthma control. MEASUREMENTS AND MAIN RESULTS In adjusted analyses, boys who were obese had a 33% greater chance of having worse asthma control than their normal-weight counterparts (OR, 1.33; 95% CI, 1.04-1.71). However, for girls this association varied with race and ethnicity (P interaction = 0.008). When compared with their normal-weight counterparts, obese African American girls (OR, 0.65; 95% CI, 0.41-1.05) were more likely to have better controlled asthma, whereas Mexican American girls had a 1.91 (95% CI, 1.12-3.28) greater odds of worse asthma control. CONCLUSIONS Worse asthma control is uniformly associated with increased body mass index in boys. Among girls, the direction of this association varied with race/ethnicity.


Human Molecular Genetics | 2008

An african-specific functional polymorphism in KCNMB1 shows sex-specific association with asthma severity

Max A. Seibold; Bin Wang; Celeste Eng; Gunjan Kumar; Kenneth B. Beckman; Saunak Sen; Shweta Choudhry; Kelley Meade; Michael LeNoir; H. Geoffrey Watson; Shannon Thyne; L. Keoki Williams; Rajesh Kumar; Kevin B. Weiss; Leslie C. Grammer; Pedro C. Avila; Robert P. Schleimer; Esteban G. Burchard; Robert Brenner

A highly heritable and reproducible measure of asthma severity is baseline pulmonary function. Pulmonary function is largely determined by airway smooth muscle (ASM) tone and contractility. The large conductance, voltage and calcium-activated potassium (BK) channel negatively regulates smooth muscle tone and contraction in ASM. The modulatory subunit of BK channels, the beta1-subunit, is critical for proper activation of BK channels in smooth muscle and has shown sex hormone specific regulation. We hypothesized that KCNMB1 genetic variants in African Americans may underlie differences in bronchial smooth muscle tone and thus pulmonary function, possibly in a sex-specific manner. Through resequencing of the KCNMB1 gene we identified several common variants including a novel African-specific coding polymorphism (C818T, R140W). The C818T SNP and four other KCNMB1 variants were genotyped in two independent groups of African American asthmatics (n = 509) and tested for association with the pulmonary function measure--forced expiratory volume (FEV(1)) % of predicted value. The 818T allele is associated with a clinically significant decline (-13%) in FEV(1) in both cohorts of asthmatics among males but not females (P(combined) = 0.0003). Patch clamp electrophysiology studies of the BK channel expressed with the 140Trp variant of the beta1-subunit demonstrated significantly reduced channel openings, predicted by the loss of pulmonary function observed. African American male asthmatics carrying the 818T allele (10% of population) are potentially at risk for greater airway obstruction and increased asthma morbidity. Female asthmatics may be insulated from the deleterious effects of the 818T allele by estrogen-mediated upregulation in BK channel activity.


Genome Biology | 2009

Ancestry-related assortative mating in Latino populations

Neil Risch; Shweta Choudhry; Marc Via; Analabha Basu; Ronnie Sebro; Celeste Eng; Kenneth B. Beckman; Shannon Thyne; Rocio Chapela; Jose R. Rodriguez-Santana; William Rodriguez-Cintron; Pedro C. Avila; Elad Ziv; Esteban G. Burchard

BackgroundWhile spouse correlations have been documented for numerous traits, no prior studies have assessed assortative mating for genetic ancestry in admixed populations.ResultsUsing 104 ancestry informative markers, we examined spouse correlations in genetic ancestry for Mexican spouse pairs recruited from Mexico City and the San Francisco Bay Area, and Puerto Rican spouse pairs recruited from Puerto Rico and New York City. In the Mexican pairs, we found strong spouse correlations for European and Native American ancestry, but no correlation in African ancestry. In the Puerto Rican pairs, we found significant spouse correlations for African ancestry and European ancestry but not Native American ancestry. Correlations were not attributable to variation in socioeconomic status or geographic heterogeneity. Past evidence of spouse correlation was also seen in the strong evidence of linkage disequilibrium between unlinked markers, which was accounted for in regression analysis by ancestral allele frequency difference at the pair of markers (European versus Native American for Mexicans, European versus African for Puerto Ricans). We also observed an excess of homozygosity at individual markers within the spouses, but this provided weaker evidence, as expected, of spouse correlation. Ancestry variance is predicted to decline in each generation, but less so under assortative mating. We used the current observed variances of ancestry to infer even stronger patterns of spouse ancestry correlation in previous generations.ConclusionsAssortative mating related to genetic ancestry persists in Latino populations to the current day, and has impacted on the genomic structure in these populations.


JAMA | 2015

Early Administration of Azithromycin and Prevention of Severe Lower Respiratory Tract Illnesses in Preschool Children With a History of Such Illnesses: A Randomized Clinical Trial

Leonard B. Bacharier; Theresa W. Guilbert; David T. Mauger; Susan J. Boehmer; Avraham Beigelman; Anne M. Fitzpatrick; Daniel J. Jackson; Sachin N. Baxi; Mindy Benson; Carey-Ann D. Burnham; Michael D. Cabana; Mario Castro; James F. Chmiel; Ronina A. Covar; Michael O. Daines; Jonathan M. Gaffin; Deborah A. Gentile; Fernando Holguin; Elliot Israel; H. William Kelly; Stephen C. Lazarus; Robert F. Lemanske; Ngoc P. Ly; Kelley Meade; Wayne Morgan; James N. Moy; Tod Olin; Stephen P. Peters; Wanda Phipatanakul; Jacqueline A. Pongracic

IMPORTANCE Many preschool children develop recurrent, severe episodes of lower respiratory tract illness (LRTI). Although viral infections are often present, bacteria may also contribute to illness pathogenesis. Strategies that effectively attenuate such episodes are needed. OBJECTIVE To evaluate if early administration of azithromycin, started prior to the onset of severe LRTI symptoms, in preschool children with recurrent severe LRTIs can prevent the progression of these episodes. DESIGN, SETTING, AND PARTICIPANTS A randomized, double-blind, placebo-controlled, parallel-group trial conducted across 9 academic US medical centers in the National Heart, Lung, and Blood Institutes AsthmaNet network, with enrollment starting in April 2011 and follow-up complete by December 2014. Participants were 607 children aged 12 through 71 months with histories of recurrent, severe LRTIs and minimal day-to-day impairment. INTERVENTION Participants were randomly assigned to receive azithromycin (12 mg/kg/d for 5 days; n = 307) or matching placebo (n = 300), started early during each predefined RTI (childs signs or symptoms prior to development of LRTI), based on individualized action plans, over a 12- through 18-month period. MAIN OUTCOMES AND MEASURES The primary outcome measure was the number of RTIs not progressing to a severe LRTI, measured at the level of the RTI, that would in clinical practice trigger the prescription of oral corticosteroids. Presence of azithromycin-resistant organisms in oropharyngeal samples, along with adverse events, were among the secondary outcome measures. RESULTS A total of 937 treated RTIs (azithromycin group, 473; placebo group, 464) were experienced by 443 children (azithromycin group, 223; placebo group, 220), including 92 severe LRTIs (azithromycin group, 35; placebo group, 57). Azithromycin significantly reduced the risk of progressing to severe LRTI relative to placebo (hazard ratio, 0.64 [95% CI, 0.41-0.98], P = .04; absolute risk for first RTI: 0.05 for azithromycin, 0.08 for placebo; risk difference, 0.03 [95% CI, 0.00-0.06]). Induction of azithromycin-resistant organisms and adverse events were infrequently observed. CONCLUSIONS AND RELEVANCE Among young children with histories of recurrent severe LRTIs, the use of azithromycin early during an apparent RTI compared with placebo reduced the likelihood of severe LRTI. More information is needed on the development of antibiotic-resistant pathogens with this strategy. TRIAL REGISTRATION clinicaltrials.gov Identifier: NCT01272635.


The Journal of Allergy and Clinical Immunology | 2015

Genetic ancestry influences asthma susceptibility and lung function among Latinos.

Maria Pino-Yanes; Neeta Thakur; Christopher R. Gignoux; Joshua M. Galanter; Lindsey A. Roth; Celeste Eng; Katherine K. Nishimura; Sam S. Oh; Hita Vora; Scott Huntsman; Elizabeth A. Nguyen; Donglei Hu; Katherine A. Drake; David V. Conti; Andres Moreno-Estrada; Karla Sandoval; Cheryl A. Winkler; Luisa N. Borrell; Fred Lurmann; Talat Islam; Adam Davis; Harold J. Farber; Kelley Meade; Pedro C. Avila; Denise Serebrisky; Kirsten Bibbins-Domingo; Michael LeNoir; Jean G. Ford; Emerita Brigino-Buenaventura; William Rodriguez-Cintron

BACKGROUND Childhood asthma prevalence and morbidity varies among Latinos in the United States, with Puerto Ricans having the highest and Mexicans the lowest. OBJECTIVE To determine whether genetic ancestry is associated with the odds of asthma among Latinos, and secondarily whether genetic ancestry is associated with lung function among Latino children. METHODS We analyzed 5493 Latinos with and without asthma from 3 independent studies. For each participant, we estimated the proportion of African, European, and Native American ancestry using genome-wide data. We tested whether genetic ancestry was associated with the presence of asthma and lung function among subjects with and without asthma. Odds ratios (OR) and effect sizes were assessed for every 20% increase in each ancestry. RESULTS Native American ancestry was associated with lower odds of asthma (OR = 0.72, 95% CI: 0.66-0.78, P = 8.0 × 10(-15)), while African ancestry was associated with higher odds of asthma (OR = 1.40, 95% CI: 1.14-1.72, P = .001). These associations were robust to adjustment for covariates related to early life exposures, air pollution, and socioeconomic status. Among children with asthma, African ancestry was associated with lower lung function, including both pre- and post-bronchodilator measures of FEV1 (-77 ± 19 mL; P = 5.8 × 10(-5) and -83 ± 19 mL; P = 1.1 x 10(-5), respectively) and forced vital capacity (-100 ± 21 mL; P = 2.7 × 10(-6) and -107 ± 22 mL; P = 1.0 x 10(-6), respectively). CONCLUSION Differences in the proportions of genetic ancestry can partially explain disparities in asthma susceptibility and lung function among Latinos.


Human Genetics | 2006

Admixture-Matched Case-Control Study: A Practical Approach for Genetic Association Studies in Admixed Populations

Hui-Ju Tsai; Jennifer Kho; Nishat Shaikh; Shweta Choudhry; Mariam Naqvi; Daniel Navarro; Henry Matallana; Richard A. Castro; Craig M. Lilly; H. George Watson; Kelley Meade; Michael LeNoir; Shannon Thyne; Elad Ziv; Esteban G. Burchard

Case-control genetic association studies in admixed populations are known to be susceptible to genetic confounding due to population stratification. The transmission/disequilibrium test (TDT) approach can avoid this problem. However, the TDT is expensive and impractical for late-onset diseases. Case-control study designs, in which, cases and controls are matched by admixture, can be an appealing and a suitable alternative for genetic association studies in admixed populations. In this study, we applied this matching strategy when recruiting our African American participants in the Study of African American, Asthma, Genes and Environments. Group admixture in this cohort consists of 83% African ancestry and 17% European ancestry, which was consistent with reports from other studies. By carrying out several complementary analyses, our results show that there is a substructure in the cohort, but that the admixture distributions are almost identical in cases and controls, and also in cases only. We performed association tests for asthma-related traits with ancestry, and only found that FEV1, a measure for baseline pulmonary function, was associated with ancestry after adjusting for socio-economic and environmental risk factors (P=0.01). We did not observe an excess of type I error rate in our association tests for ancestry informative markers and asthma-related phenotypes when ancestry was not adjusted in the analyses. Furthermore, using the association tests between genetic variants in a known asthma candidate gene, β2 adrenergic receptor (β2AR) and ΔFEF25–75, an asthma-related phenotype, as an example, we demonstrated population stratification was not a confounder in our genetic association. Our present work demonstrates that admixture-matched case-control strategies can efficiently control population stratification confounding in admixed populations.


The Journal of Allergy and Clinical Immunology | 2012

Effect of secondhand smoke on asthma control among black and Latino children

Sam S. Oh; Haig Tcheurekdjian; Lindsey A. Roth; Elizabeth A. Nguyen; Saunak Sen; Joshua M. Galanter; Adam Davis; Harold J. Farber; Frank D. Gilliland; Rajesh Kumar; Pedro C. Avila; Emerita Brigino-Buenaventura; Rocio Chapela; Jean G. Ford; Michael LeNoir; Fred Lurmann; Kelley Meade; Denise Serebrisky; Shannon Thyne; William Rodriguez-Cintron; Jose R. Rodriguez-Santana; L. Keoki Williams; Luisa N. Borrell; Esteban G. Burchard

BACKGROUND Among patients with asthma, the clinical effect and relative contribution of maternal smoking during pregnancy (in utero smoking) and current secondhand smoke (SHS) exposure on asthma control is poorly documented, and there is a paucity of research involving minority populations. OBJECTIVES We sought to examine the association between poor asthma control and in utero smoking and current SHS exposure among Latino and black children with asthma. METHODS We performed a case-only analysis of 2 multicenter case-control studies conducted from 2008-2010 with similar protocols. We recruited 2481 Latino and black subjects with asthma (ages 8-17 years) from the mainland United States and Puerto Rico. Ordinal logistic regression was used to estimate the effect of in utero smoking and current SHS exposures on National Heart, Lung, and Blood Institute-defined asthma control. RESULTS Poor asthma control among children 8 to 17 years of age was independently associated with in utero smoking (odds ratio [OR], 1.5; 95% CI, 1.1-2.0). In utero smoking through the mother was also associated with secondary asthma outcomes, including early-onset asthma (OR, 1.7; 95% CI, 1.1-2.4), daytime symptoms (OR, 1.6; 95% CI, 1.1-2.1), and asthma-related limitation of activities (OR, 1.6; 95% CI, 1.2-2.2). CONCLUSIONS Maternal smoking while in utero is associated with poor asthma control in black and Latino subjects assessed at 8-17 years of age.


American Journal of Respiratory and Critical Care Medicine | 2013

Socioeconomic Status and Childhood Asthma in Urban Minority Youths. The GALA II and SAGE II Studies

Neeta Thakur; Sam S. Oh; Elizabeth A. Nguyen; Melissa Martin; Lindsey A. Roth; Joshua M. Galanter; Christopher R. Gignoux; Celeste Eng; Adam Davis; Kelley Meade; Michael LeNoir; Pedro C. Avila; Harold J. Farber; Denise Serebrisky; Emerita Brigino-Buenaventura; William Rodriguez-Cintron; Rajesh Kumar; L. Keoki Williams; Kirsten Bibbins-Domingo; Shannon Thyne; Saunak Sen; Jose R. Rodriguez-Santana; Luisa N. Borrell; Esteban G. Burchard

RATIONALE The burden of asthma is highest among socioeconomically disadvantaged populations; however, its impact is differentially distributed among racial and ethnic groups. OBJECTIVES To assess the collective effect of maternal educational attainment, annual household income, and insurance type on childhood asthma among minority, urban youth. METHODS We included Mexican American (n = 485), other Latino (n = 217), and African American (n = 1,141) children (aged 8-21 yr) with and without asthma from the San Francisco Bay Area. An index was derived from maternal educational attainment, annual household income, and insurance type to assess the collective effect of socioeconomic status on predicting asthma. Logistic regression stratified by racial and ethnic group was used to estimate adjusted odds ratios (aOR) and their 95% confidence intervals (CI). We further examined whether acculturation explained the socioeconomic-asthma association in our Latino population. MEASUREMENTS AND MAIN RESULTS In the adjusted analyses, African American children had 23% greater odds of asthma with each decrease in the socioeconomic index (aOR, 1.23; 95% CI, 1.09-1.38). Conversely, Mexican American children have 17% reduced odds of asthma with each decrease in the socioeconomic index (aOR, 0.83; 95% CI, 0.72-0.96) and this relationship was not fully explained by acculturation. This association was not observed in the other Latino group. CONCLUSIONS Socioeconomic status plays an important role in predicting asthma, but has different effects depending on race and ethnicity. Further steps are necessary to better understand the risk factors through which socioeconomic status could operate in these populations to prevent asthma.

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Celeste Eng

University of California

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Kelley Meade

Children's Hospital Oakland Research Institute

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Michael LeNoir

University of California

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Harold J. Farber

Baylor College of Medicine

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Sam S. Oh

University of California

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Rajesh Kumar

Children's Memorial Hospital

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