Sharon K. Papiernik

Impact of Fumigants on Soil Microbial Communities

ABSTRACT Agricultural soils are typically fumigated to provide effective control of nematodes, soilborne pathogens, and weeds in preparation for planting of high-value cash crops. The ability of soil microbial communities to recover after treatment with fumigants was examined using culture-dependent (Biolog) and culture-independent (phospholipid fatty acid [PLFA] analysis and denaturing gradient gel electrophoresis [DGGE] of 16S ribosomal DNA [rDNA] fragments amplified directly from soil DNA) approaches. Changes in soil microbial community structure were examined in a microcosm experiment following the application of methyl bromide (MeBr), methyl isothiocyanate, 1,3-dichloropropene (1,3-D), and chloropicrin. Variations among Biolog fingerprints showed that the effect of MeBr on heterotrophic microbial activities was most severe in the first week and that thereafter the effects of MeBr and the other fumigants were expressed at much lower levels. The results of PLFA analysis demonstrated a community shift in all treatments to a community dominated by gram-positive bacterial biomass. Different 16S rDNA profiles from fumigated soils were quantified by analyzing the DGGE band patterns. The Shannon-Weaver index of diversity,H, was calculated for each fumigated soil sample. High diversity indices were maintained between the control soil and the fumigant-treated soils, except for MeBr (H decreased from 1.14 to 0.13). After 12 weeks of incubation, Hincreased to 0.73 in the MeBr-treated samples. Sequence analysis of clones generated from unique bands showed the presence of taxonomically unique clones that had emerged from the MeBr-treated samples and were dominated by clones closely related to Bacillus spp. andHeliothrix oregonensis. Variations in the data were much higher in the Biolog assay than in the PLFA and DGGE assays, suggesting a high sensitivity of PLFA analysis and DGGE in monitoring the effects of fumigants on soil community composition and structure. Our results indicate that MeBr has the greatest impact on soil microbial communities and that 1,3-D has the least impact.

Molecular characterization of biochars and their influence on microbiological properties of soil.

The tentative connection between the biochar surface chemical properties and their influence on microbially mediated mineralization of C, N, and S with the help of enzymes is not well established. This study was designed to investigate the effect of different biomass conversion processes (microwave pyrolysis, carbon optimized gasification, and fast pyrolysis using electricity) on the composition and surface chemistry of biochar materials produced from corn stover (Zea mays L.), switchgrass (Panicum virgatum L.), and Ponderosa pine wood residue (Pinus ponderosa Lawson and C. Lawson) and determine the effect of biochars on mineralization of C, N, and S and associated soil enzymatic activities including esterase (fluorescein diacetate hydrolase, FDA), dehydrogenase (DHA), β-glucosidase (GLU), protease (PROT), and aryl sulfatase (ARSUL) in two different soils collected from footslope (Brookings) and crest (Maddock) positions of a landscape. Chemical properties of biochar materials produced from different batches of gasification process were fairly consistent. Biochar materials were found to be highly hydrophobic (low H/C values) with high aromaticity, irrespective of biomass feedstock and pyrolytic process. The short term incubation study showed that biochar had negative effects on microbial activity (FDA and DHA) and some enzymes including β-glucosidase and protease.

Environmental Fate of Methyl Bromide as a Soil Fumigant

The great variation among results of recent experiments measuring the total emission of MeBr from fields implies that many factors influence MeBr transport and transformation in the soil-water-air system and its ultimate loss from the soil surface. It has been demonstrated that variables related to application methods (e.g., injection depth, use and type of surface tarp), soil properties (e.g., water content, bulk density, soil organic matter), and climatic conditions (e.g.. air temperature, wind speed, barometric pressure) have pronounced effects on MeBr volatilization following soil injection. The following conclusions can be drawn from this experimental information. Tarping consistently, increased the residence time and concentration of MeBr residing in the soil. Prolonged retention of MeBr in the soil resulted in more extensive degradation and reduced cumulative emissions. Research indicates that the polyethylene film typically used for the surface cover is relatively permeable to MeBr and allows significant emissions compared to virtually impermeable plastic films. This effect is more pronounced during periods of high temperature. Soil type, soil water content, and bulk density are important factors affecting MeBr transport and transformation in soil, which ultimately affect volatilization. The total volatilization from a soil with high organic matter content may be drastically reduced relative to that from a low organic matter soil. Amendment of the surface soil with organic matter or nucleophilic compounds that promote increased degradation may offer another method for reducing volatilization. MeBr volatilization may also be decreased by increasing soil water content and bulk density, mainly because of the reduced gas-phase diffusion resulting from reduced soil air-filled porosity. To minimize volatilization, MeBr should be applied during periods of cool temperature, injected relatively deep in organic-rich, moist soil, and the soil surface packed and tarped immediately after the application. Depending on site-specific conditions, a new high-barrier plastic should be used. Injecting MeBr during periods of warm temperature, at a shallow depth in dry, loose soil without the use of low-permeability plastic barriers, will likely result in maximum volatilization rates and therefore should be discouraged. Before adopting any new emission reduction technology, the pest control characteristics of the new methodology should be assessed under soil and environmental conditions typical of the region to optimize efficacy while minimizing environmental contamination. There is considerable current scientific evidence indicating that eliminating MeBr use for soil fumigation may not have a significant impact on stratospheric ozone depletion. Management practices can and have been developed that essentially eliminate atmospheric emissions of MeBr and other fumigant compounds following soil application. Some scientists have suggested that there are natural buffers and various unknown sources of MeBr that make it impossible to ascertain that eliminating soil fumigation with MeBr will significantly improve stratospheric ozone levels. It is quite certain, however, that the phase-out will make it much more difficult for growers to economically provide an adequate and healthful food supply in the U.S. and elsewhere in the world. As the phase-out date approaches, there remains a great need for information about MeBr and stratospheric ozone depletion. Stratospheric ozone must be protected, but recent experiments suggest that it can be protected while still allowing MeBr to be used for soil fumigation. A new approach may be warranted in which state and federal regulations recognize that every chemical is a potential environmental contaminant, depending on the properties of the chemical and the environmental conditions prevailing following its application. Ideally, regulations should incorporate incentives to develop technology that minimizes the likelihood that a chemical becomes an environmental and/or public health problem. Rather than instituting an irrevocable ban, allowing for a suspension of chemical use until the appropriate technology is developed to control the undesirable characteristic(s) of the chemical use would provide much more flexibility to growers and may enhance environmental protection by adopting a proactive approach in which growers, chemical manufacturers, regulators, and the public can have confidence.

Transformation kinetics and mechanism of the sulfonylurea herbicides pyrazosulfuron ethyl and halosulfuron methyl in aqueous solutions

Pyrazosulfuron ethyl (PE) and halosulfuron methyl (HM) are two new highly active sulfonylurea herbicides that have been widely used for weed control in a variety of vegetables and other crops. These two herbicides have similar molecular structures, differing only in the substitutions on the pyrazole ring. Chemical hydrolysis is a primary process affecting the environmental fate of sulfonylurea pesticides. The hydrolytic transformation kinetics of PE and HM were investigated as a function of pH and temperature. For both herbicides, the hydrolysis rate was pH-dependent and increased with increasing temperature. The hydrolysis of both sulfonylureas was much faster in acidic or basic media than under neutral conditions. Identification of hydrolytic products by liquid chromatography-mass spectrometry (LC-MS) suggested that both PE and HM were subject to cleavage and contraction of the sulfonylurea bridge. The hydrolysis rate of HM was significantly higher than that of PE in alkaline solutions, despite their structural similarity. A chlorine substitution on HMs pyrazole ring makes HM more susceptible to bridge contraction than PE under basic conditions. The hydrolysis of HM and PE was relatively unaffected by the presence of cyclic oligosaccharides (cyclodextrins), indicating that natural OH-containing organic compounds occurring in aquatic environments may have little impact on the transformation of these sulfonylurea herbicides.

A standardized approach for estimating the permeability of plastic films to soil fumigants under various field and environmental conditions.

Minimizing atmospheric emissions of soil fumigants is critical for protecting human and environmental health. Covering the soil surface with a plastic tarp is a common approach to restrict fumigant emissions. The mass transfer of the fumigant vapors through the tarp is often the rate-limiting factor in fumigant emissions. An approach for standardizing measurements of film permeability is proposed that is based on determining the resistance (R) of films to diffusion of fumigants. Using this approach, values were determined for more than 200 film-chemical combinations under a range of temperature, relative humidity, and film handling conditions. Resistance to diffusion was specific for each fumigant/film combination, with the largest range of values observed for the fumigant chloropicrin. For each fumigant, decreased with increasing temperature. Changes in film permeability due to increases in temperature or field installation were generally less than a factor of five. For one film, values determined under conditions of very high relative humidity (approximately 100%) were at least 100 times lower than when humidity was very low (approximately 2%). This approach simplifies the selection of appropriate films for soil fumigation by providing rapid, reproducible, and precise measurements of their permeability to specific fumigants and application conditions.

Herbicide Sorption Coefficients in Relation to Soil Properties and Terrain Attributes on a Cultivated Prairie

The sorption of 2,4-D and glyphosate herbicides in soil was quantified for 287 surface soils (0-15 cm) collected in a 10 x 10 m grid across a heavily eroded, undulating, calcareous prairie landscape. Other variables that were determined included soil carbonate content, soil pH, soil organic carbon content (SOC), soil texture, soil loss or gain by tillage and water erosion, and selected terrain attributes and landform segments. The 2,4-D sorption coefficient (Kd) was significantly associated with soil carbonate content (-0.66; P < 0.001), soil pH (-0.63; P < 0.001), and SOC (0.47; P < 0.001). Upper slopes were strongly eroded and thus had a significantly greater soil carbonate content and less SOC compared with lower slopes that were in soil accumulation zones. The 2,4-D Kd was almost twice as small in upper slopes than in lower slopes. The 2,4-D Kd was also significantly associated with nine terrain attributes, particularly with compounded topographic index (0.59; P < 0.001), gradient (-0.48; P < 0.001), mean curvature (-0.43; P < 0.001), and plan curvature (-0.42 P < 0.001). Regression equations were generated to estimate herbicide sorption in soils. The predicted power of these equations increased for 2,4-D when selected terrain attributes were combined with soil properties. In contrast, the variation of glyphosate sorption across the field was much less dependent on our measured soil properties and calculated terrain attributes. We conclude that the integration of terrain attributes or landform segments in pesticide fate modeling is more advantageous for herbicides such as 2,4-D, whose sorption to soil is weak and influenced by subtle changes in soil properties, than for herbicides such as glyphosate that are strongly bound to soil regardless of soil properties.

Persistence of Escherichia coli O157:H7 on the rhizosphere and phyllosphere of lettuce

Aims:  The major objective of this study was to determine the effects of low levels of Escherichia coli O157:H7 contamination on plant by monitoring the survival of the pathogen on the rhizosphere and leaf surfaces of lettuce during the growth process.

Sorption and predicted mobility of herbicides in Baltic soils

This study was undertaken to determine sorption coefficients of eight herbicides (alachlor, amitrole, atrazine, simazine, dicamba, imazamox, imazethapyr, and pendimethalin) to seven agricultural soils from sites throughout Lithuania. The measured sorption coefficients were used to predict the susceptibility of these herbicides to leach to groundwater. Soil-water partitioning coefficients were measured in batch equilibrium studies using radiolabeled herbicides. In most soils, sorption followed the general trend pendimethalin > alachlor > atrazine∼ amitrole∼ simazine > imazethapyr > imazamox > dicamba, consistent with the trends in hydrophobicity (log Kow) except in the case of amitrole. For several herbicides, sorption coefficients and calculated retardation factors were lowest (predicted to be most susceptible to leaching) in a soil of intermediate organic carbon content and sand content. Calculated herbicide retardation factors were high for soils with high organic carbon contents. Estimated leaching times under saturated conditions, assuming no herbicide degradation and no preferential water flow, were more strongly affected by soil textural effects on predicted water flow than by herbicide sorption effects. All herbicides were predicted to be slowest to leach in soils with high clay and low sand contents, and fastest to leach in soils with high sand content and low organic matter content. Herbicide management is important to the continued increase in agricultural production and profitability in the Baltic region, and these results will be useful in identifying critical areas requiring improved management practices to reduce water contamination by pesticides.

Herbicides Tolerated by Cuphea (Cuphea viscosissima × lanceolata)1

Partial seed retention line #23(‘PSR23’) cuphea is a hybrid of Cuphea viscosissima × C. lanceolata. It is a new, spring-planted, annual, potential oilseed crop that is highly susceptible to interference by weeds because of its slow growth during spring and early summer. Grass weeds are controlled easily in this broadleaf crop, but broadleaf weeds are an appreciable problem. Consequently, several broadleaf herbicides were screened for tolerance by ‘PSR23’ cuphea. Broadleaf herbicides to which cuphea showed tolerance in a spray cabinet and a greenhouse were tested in a field setting for 2 yr. Field tolerance was considered as absence of negative impact (P > 0.05) both years to any of four measured traits: overall vigor, dry weight, stand density, and time to anthesis. Cuphea showed tolerance in the field to three soil-applied herbicides (ethalfluralin, isoxaflutole, and trifluralin) and one postemergence herbicide (mesotrione). A few combinations of soil-applied and postemergence herbicides did not damage cuphea. These combinations were ethalfluralin followed by (fb) mesotrione, isoxaflutole fb imazethapyr, and isoxaflutole fb mesotrione. Availability of these herbicides for use in cuphea production may facilitate the domestication and acceptance of this new crop. Nomenclature: ‘PSR23’ cuphea, Cuphea viscosissima Jacq. × C. lanceolata f. silenoides W. T. Aiton. Additional index words: Capric acid, ethalfluralin, isoxaflutole, imazethapyr, lauric acid, mesotrione, oilseed, PSR23, trifluralin. Abbreviations: fb, followed by; MCFA, medium chain fatty acid; PA, plant-applied; PPI, preplant incorporated; ‘PSR23’, partial seed retention line #23; SA, soil-applied.

Influence of fumigants on soil microbial diversity and survival of E. coli O157:H7

The aim of this study was to assess the effects of soil fumigation with methyl bromide (MeBr; CH3Br) and methyl iodide (MeI, iodomethane; CH3I) on the microbial community structure and diversity in two soils and determine the effects of microbial diversity on the survival of Escherichia coli O157:H7 from contaminated irrigation water. Polymerase chain reaction (PCR) was used to amplify 16S rRNA from total bacterial community composition and the products were subjected to denaturing gradient gel electrophoresis (DGGE). The Shannon-Weaver index of diversity (H′) was used to determine the effects of both fumigants on soil microbial diversity. The effect was more severe in sandy soil than in clay soil at the normal application rate of MeBr and MeI. Our results showed that MeBr and MeI have about the same effects on soil microbial diversity. The two fumigants had greater impact on microbial diversity in sandy soil than in clay soil and this resulted in higher survival of E. coli O157:H7 in sandy soil than in clay soil during the 50 days that the study was conducted. MeBr has been used as soil fumigant for >40 years with no serious detrimental effects on agricultural production and our research also suggests that the use of MeI may also produce no long-term detrimental effects on agricultural production since both fumigants had about the same effects on soil microbial communities. Therefore, soil systems with reduced microbial diversity may offer greater opportunities for the survival of pathogenic bacteria such as E. coli O157:H7.