Shigeaki Kojima

Deep-Sea Chemoautosynthesis-Based Communities in the Northwestern Pacific

I review chemoautosynthesis-based faunal communities which have been discovered in the deep-sea areas in the Northwestern Pacific. Fauna of each community and further biological studies are summarized. Zoogeographical and evolutionary status of communities in the Northwestern Pacific is discussed.

Host-Symbiont Relationships in Hydrothermal Vent Gastropods of the Genus Alviniconcha from the Southwest Pacific

ABSTRACT Hydrothermal vent gastropods of the genus Alviniconcha are unique among metazoans in their ability to derive their nutrition from chemoautotrophic γ- and ε-proteobacterial endosymbionts. Although host-symbiont relationships in Alviniconcha gastropods from the Central Indian Ridge in the Indian Ocean and the Mariana Trough in the Western Pacific have been studied extensively, host-symbiont relationships in Alviniconcha gastropods from the Southwest Pacific remain largely unknown. Phylogenetic analysis using mitochondrial cytochrome c oxidase subunit I gene sequences of host gastropods from the Manus, North Fiji, and Lau Back-Arc Basins in the Southwest Pacific has revealed a new host lineage in a Alviniconcha gastropod from the Lau Basin and the occurrence of the host lineage Alviniconcha sp. type 2 in the Manus Basin. Based on 16S rRNA gene sequences of bacterial endosymbionts, two γ-proteobacterial lineages and one ε-proteobacterial lineage were identified in the present study. The carbon isotopic compositions of the biomass and fatty acids of the gastropod tissues suggest that the γ- and ε-proteobacterial endosymbionts mediate the Calvin-Benson cycle and the reductive tricarboxylic acid cycle, respectively, for their chemoautotrophic growth. Coupling of the host and symbiont lineages from the three Southwest Pacific basins revealed that each of the Alviniconcha lineages harbors different bacterial endosymbionts belonging to either the γ- or ε-Proteobacteria. The host specificity exhibited in symbiont selection provides support for the recognition of each of the host lineages as a distinct species. The results from the present study also suggest the possibility that Alviniconcha sp. types 1 and 2 separately inhabit hydrothermal vent sites approximately 120 m apart in the North Fiji Basin and 500 m apart in the Manus Basin.

Abundance of deep-sea meiobenthos off Sanriku, northeastern Japan

Abundance of deep-sea meiobenthos off Sanriku, Northeastern Japan was studied quantitatively using sediment samples collected by box corers or an Okean grab. Sampling stations were established along a line transect which covered areas from off the mouth of Otsuchi Bay to the abyssal plain of the western Pacific crossing over the Japan Trench (water depths from 120 m to 7460 m). Abundance of meiobenthos decreased linearly with water depth down to 1503 m and became constant at stations deeper than 4130 m. Nematodes predominated over the other taxonomic groups at all stations. An equation to estimate meiofaunal abundance from several sediment characteristics, which was previously proposed by the first author based on data from tropical and subtropical regions of the western Pacific, was applied to the present boreal area. At one station where the Okean grab was used, the estimated value was 4.7 times more than the observed one. Except for the station, however, observed values fell within the confident range of estimated values. The estimated values were always higher than the observed ones at boxcorer stations, whereasvice versa at Okean-grab stations. These results suggested that keen attention is necessary in selecting sampling gear for ecological studies of deep-sea meiobenthos.

Phylogeny of Hydrothermal-Vent-Endemic Gastropods Alviniconcha spp. from the Western Pacific Revealed by Mitochondrial DNA Sequences

Mitochondrial genes for cytochrome oxidase I (COI) from hydrothermal-vent–endemic gastropods of the genus Alviniconcha were sequenced to determine the phylogenetic relationships among specimens from three areas in the western Pacific. Individuals of Alviniconcha hessleri were collected at two vent fields (depths 1470 m and 3600 m) in the Mariana Trough. Specimens collected in the North Fiji Basin could be divided into two genetically distinct groups, both of which also differed from A. hessleri from the Mariana Trough. None of the specimens of the genus Alviniconcha collected in the Manus Basin differed genetically from the dominant group from the North Fiji Basin. We suggest that the specimens of the genus Alviniconcha analyzed in the present study can be tentatively classified into A. hessleri and two undescribed species.

Population structure of Japanese spiny lobster Panulirus japonicus inferred by nucleotide sequence analysis of mitochondrial COI gene

The mitochondrial DNA sequence for the COI region was determined for 73 Panulirus japonicus individuals collected at three sample locations in Japan. Fifty-one haplotypes, including 69 polymorphic sites without insertion and deletion, were detected, of which three dominant haplotypes were shared among the three sample locations. The nucleotide and haplotype diversities at the three sample locations were in the ranges of 0.009–0.010 and 0.959–0.990, respectively. No significant population subdivision was detected among the sample locations based on the Fst value and net nucleotide substitution rate, and analysis of the molecular variance model (AMOVA). There was no characteristic geographic distribution pattern for these haplotypes. These results indicate there is no genetic differentiation between P. japonicus populations in Japan, and support the hypothesis that benthic individuals of P. japonicus are sustained from a population of a common pool of long-period phyllosoma larvae through long-distance larval transport within the Kuroshio Subgyre.

Phylogenetic relationships among species of Calyptogena (Bivalvia: Vesicomyidae) collected around Japan revealed by nucleotide sequences of mitochondrial genes

Phylogenetic relationships among the seven species of deep-sea giant clams Calyptogena (Bivalvia: Vesicomyidae) collected around Japan were examined using parts of nucleotide sequences of mitochondrial genes for cytochrome oxidase I (COI) and cytochrome oxidase III (COIII) and the encoded amino acid sequences. The seven species were C. soyoae (Sagami Bay), C. fausta (Suruga Bay), C. kaikoi (Nankai Trough), C. nautilei (Nankai Trough), C. phaseoliformis (Japan Trench), C. solidissima (Minami-Ensei Knoll, Okinawa Trough) and Calyptogena sp. (Iheya Ridge, Okinawa Trough). A clear phylogenetic split was observed between one group of three species (C. kaikoi, C. phaseoliformis and C. fausta) and the remaining species. This clustering corresponds to the two previously described subgenera within the genus Calyptogena (Calyptogean and Ectenagena) with the exception of the placement of C. nautilei, which had been placed in the subgenus Ectenagena. Genetic distances between two haplotypes of C. soyoae were 0.043 for the COI region and 0.055 for the COIII region, and three amino acid substitutions were detected with the COIII region. Calyptogena sp. from the Iheya Ridge could be distinguished from one of the two haplotypes (type A) of C. soyoae by only a single nucleotide substitution, a result that suggests that Calyptogena sp. of the Iheya Ridge diverged from C. soyoae after the two haplotypes had diverged, and it is now isolated from C. soyoae in Sagami Bay.

Genetic Differentiation of Populations of a Hydrothermal Vent-Endemic Gastropod, Ifremeria nautilei, between the North Fiji Basin and the Manus Basin revealed by Nucleotide Sequences of Mitochondrial DNA.

Abstract The genetic differentiation of populations of a hydrothermal vent-endemic gastropod, Ifremeria nautilei, between two back-arc basins in the south Western Pacific, namely the Manus Basin and the North Fiji Basin, was analyzed on the basis of nucleotide sequences of the mitochondrial gene for cytochrome oxidase I. The two populations of I. nautilei had no common haplotypes and appeared, therefore, to be isolated from one another. All haplotypes obtained from the North Fiji Basin formed a monophyletic group supported by a high bootstrap probability and the genetic diversity of the population in the North Fiji Basin was much smaller than that of the population in the Manus Basin. The population in the North Fiji Basin might have been founded by relatively recent migrants from the Manus Basin. The present results suggest that the larval dispersal ability of I. nautilei might be lower than that of an undescribed species in the closely related genus Alviniconchay.

Phylogenetic Relationships between the Tideland Snails Batillaria flectosiphonata in the Ryukyu Islands and B. multiformis in the Japanese Islands

Abstract Phylogenetic relationships between two sibling species of Japanese tideland snails, namely, Batillaria multiformis from the Japanese Islands and B. flectosiphonata from the Ryukyu Islands, were analyzed on the basis of the nucleotide sequences of the mitochondrial gene for cytochrome oxidase I. Populations of B. multiformis were genetically distinct from those of B. flectosiphonata with the exception of a population from Amami-Oshima Island, which corresponded to the boundary between the distributions of these two species. Individuals with the mitochondrial gene of B. multiformis and those with the mitochondrial gene of B. flectosiphonata were collected from the same tidal flat on Amami-Oshima Island. All the snails with the mitochondrial gene of B. multiformis could be divided into two genetically distinct groups but there was no geographical structure to the distribution of these two groups. Individual populations of B. flectosiphonata in the Amami, Okinawa, Miyako and Yaeyama insular groups each consisted exclusively of a unique set of haplotypes, with the exception of a population at a northern site on Okinawajima Island, which included a few individuals with sequences related to those of individuals in the Amami insular group. All individuals from South Ryukyu formed a well-supported monophyletic group, while the monophyly of individuals from Central Ryukyu was not supported. The monophyly of B. multiformis was clearly demonstrated but there was no evidence to support that of B. flectosiphonata. Batillaria multiformis might have been derived from immigrants from the Ryukyu Islands, which became isolated and diverged genetically on the Japanese Islands.

Stability of the Courses of the Warm Coastal Currents along the Kyushu Island Suggested by the Population Structure of the Japanese Turban Shell, Turbo (Batillus) Cornutus

The genetic structure of a population of the Japanese turban shell, Turbo (Batillus) cornutus at Sata-Misaki Point, on the southern coast of Kyushu Island, was determined on the basis of nucleotide sequences of mitochondrial DNA and compared with that of a population of the western coast of Kyushu Island. The significant genetic differentiation between these two populations suggests that the courses of the warm currents along the coast of the Kyushu Island have been relatively stable after the divergence between the two genetically distant groups of the Japanese turban shell, which was estimated to have occurred during some period in Pleistocene.

Assemblages of Harpacticoida (Crustacea: Copepoda) from the Ryukyu and Kuril Trenches, north-west Pacific Ocean

To examine the specific features of trench communities, spatial changes in the assemblages of harpacticoids were investigated at the family level around the Ryukyu Trench (the Ryukyu region) and Kuril Trench (the Kuril region). In the Ryukyu region, there were high average dissimilarities in the harpacticoid assemblages among the trench, trench slope and abyssal plain, indicating that the assemblage structures differ substantially between these topographic settings at the family level. Conversely, in the Kuril region, the average dissimilarities in harpacticoid assemblages between the trench and the trench slope and between the trench and the abyssal plain were lower than that between the slope and the abyssal plain. This result suggests that the hadal assemblage is a transition zone between the slope and the abyssal plain in this region. In addition, the analyses indicate that the composition of harpacticoid assemblages is influenced by the quantity of organic matter in the Ryukyu region, while sediment properties play a key role in the Kuril region. Comparisons of the assemblages between the two regions, however, revealed that the average dissimilarities between the trenches and between the abyssal plains were higher than that between the adjacent slopes. This result suggests that interchange among regions is difficult for deep-sea benthic animals, including harpacticoid copepods, likely due to the presence of physical barriers around trenches.