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Dive into the research topics where Shin I. Nishimura is active.

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Featured researches published by Shin I. Nishimura.


PLOS Computational Biology | 2009

Cortical Factor Feedback Model for Cellular Locomotion and Cytofission

Shin I. Nishimura; Masahiro Ueda; Masaki Sasai

Eukaryotic cells can move spontaneously without being guided by external cues. For such spontaneous movements, a variety of different modes have been observed, including the amoeboid-like locomotion with protrusion of multiple pseudopods, the keratocyte-like locomotion with a widely spread lamellipodium, cell division with two daughter cells crawling in opposite directions, and fragmentations of a cell to multiple pieces. Mutagenesis studies have revealed that cells exhibit these modes depending on which genes are deficient, suggesting that seemingly different modes are the manifestation of a common mechanism to regulate cell motion. In this paper, we propose a hypothesis that the positive feedback mechanism working through the inhomogeneous distribution of regulatory proteins underlies this variety of cell locomotion and cytofission. In this hypothesis, a set of regulatory proteins, which we call cortical factors, suppress actin polymerization. These suppressing factors are diluted at the extending front and accumulated at the retracting rear of cell, which establishes a cellular polarity and enhances the cell motility, leading to the further accumulation of cortical factors at the rear. Stochastic simulation of cell movement shows that the positive feedback mechanism of cortical factors stabilizes or destabilizes modes of movement and determines the cell migration pattern. The model predicts that the pattern is selected by changing the rate of formation of the actin-filament network or the threshold to initiate the network formation.


Artificial Life and Robotics | 2005

Chemotaxis of a eukaryotic cell in complex gradients of chemoattractants

Shin I. Nishimura; Masaki Sasai

We studied the chemotaxis of a eukaryotic cell by constructing a mathematical model that takes into account chemical kinetics as well as the cellular shape. A cell is defined as a single domain on discrete two-dimensional grids. In the cellular domain each grid contains three kinds of molecule, an activator and inhibitor of the actin polymerization, and polymerized actins. The external signal promotes production of both activator and inhibitor and thus changes the amount of polymerized actins. If the amount of polymerized actins in a grid of the cell border (i.e., the cellular membrane) is larger than a certain threshold, then a new grid adjacent to the border is assigned to the cellular grid. Upon this change of the cellular shape, constraints are imposed to preserve the cellular volume and to make the length of the cellular border as small as possible. The cell moves in the grid space driven by this change of the cellular shape. We succeeded in reproducing chemotaxis in a linear gradient. For two more complex gradients, the behavior of our cell is consistent with experimental results.


Journal of Theoretical Biology | 2007

Modulation of the reaction rate of regulating protein induces large morphological and motional change of amoebic cell.

Shin I. Nishimura; Masaki Sasai


Physical Review E | 2012

Non-Brownian dynamics and strategy of amoeboid cell locomotion

Shin I. Nishimura; Masahiro Ueda; Masaki Sasai


Physical Review E | 2005

Inertia of amoebic cell locomotion as an emergent collective property of the cellular dynamics

Shin I. Nishimura; Masaki Sasai


arXiv: Adaptation and Self-Organizing Systems | 2018

Diverse Stochasticity Leads a Colony of Ants to Optimal Foraging

Masashi Shiraishi; Rito Takeuchi; Hiroyuki Nakagawa; Tomomi Tao; Shin I. Nishimura; Akinori Awazu; Hiraku Nishimori


Seibutsu Butsuri | 2012

2PT227 A theoretical study for three-dimensional path finding by amoeboid migration(The 50th Annual Meeting of the Biophysical Society of Japan)

Shin I. Nishimura


Seibutsu Butsuri | 2011

1F1312 Three-dimensional model for amoeboid locomotion(Mathematical biology 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Shin I. Nishimura


Meeting abstracts of the Physical Society of Japan | 2011

21pJD-8 Quantitative analysis of foraging of ants by phototaxis and chemotaxis

Yusuke Ogihara; Yuji Kiritani; Kazuki Maeda; Shin I. Nishimura; Shunsuke Izumi; Junji Akino; Akinori Awazu; Hiraku Nishimori


生物物理 | 2010

1P316 画像解析による単体及び集団蟻の行動における定量的特徴の抽出(非平衡・生体リズム,第48回日本生物物理学会年会)

Yuji Kiritani; Yusuke Ogihara; Shin I. Nishimura; Akinori Awazu; Shunsuke Izumi; Toshiharu Akino; Kenichi Nakazato; Hiraku Nishimori

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Toshiharu Akino

Kyoto Institute of Technology

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