Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Shin-Ichi Kitamura is active.

Publication


Featured researches published by Shin-Ichi Kitamura.


Marine Pollution Bulletin | 2008

Toxicogenomic analysis of immune system-related genes in Japanese flounder (Paralichthys olivaceus) exposed to heavy oil.

Kei Nakayama; Shin-Ichi Kitamura; Yasunori Murakami; Jun-Young Song; Sung-Ju Jung; Hisato Iwata; Shinsuke Tanabe

Heavy oil contamination is one of the most important environmental issues. Toxicities of polycyclic aromatic hydrocarbons (PAHs), including immune toxicities, are well characterized, however, the immune toxic effects of heavy oil, as a complex mixture of PAHs, have not been investigated. In the present study, we selected Japanese flounder (Paralichthys olivaceus) as a model organism, and observed alteration of immune function by the exposure to heavy oil. To analyze the expression profiles of immune system-related genes, we selected 309 cDNAs from our flounder EST library, and spotted them on a glass slide. Using this cDNA array, alteration of gene expression profiles was analyzed in the kidneys of flounders exposed to heavy oil. Six Japanese flounders (mean body weight: 197 g) were acclimated to laboratory conditions at 19-20 degrees C. Three fish were exposed to heavy oil C (bunker C) at a concentration of 3.8 g/L for 3 days, and the others were kept in seawater without heavy oil and used as the control. After the exposure period, the fish were transferred into control seawater and maintained for 4 days, and then they were dissected and their kidneys were removed. Total RNA was extracted from the kidney samples to use in gene expression analyses. The microarray detected alteration of immune system-related genes in the kidneys of heavy oil-exposed flounders, including down-regulation of immunoglobulin light chain, CD45, major histocompatibility complex class II antigens and macrophage colony-stimulating factor precursor, and up-regulation of interleukin-8 and lysozyme. These results suggest that pathogen resistance may be weakened in heavy oil-exposed fish, causing a subsequent bacterial infection, and then proinflammatory genes may be induced as a defensive response against the infection. Additionally, we found candidate genes for use as biomarkers of heavy oil exposure, such as N-myc downstream regulated gene 1 and heat shock cognate 71 kDa proteins.


Diseases of Aquatic Organisms | 2009

Pathogenicity of Miamiensis avidus (syn. Philasterides dicentrarchi), Pseudocohnilembus persalinus, Pseudocohnilembus hargisi and Uronema marinum (Ciliophora, Scuticociliatida)

Jun-Young Song; Shin-Ichi Kitamura; Hyun-Sil Kang; Jehee Lee; Shinji Tanaka; Sung-Ju Jung

The scuticociliates Miamiensis avidus (syn. Philasterides dicentrarchi), Pseudocohnilembus persalinus, Pseudocohnilembus hargisi and Uronema marinum were cloned and identified using morphological characteristics and the small subunit ribosomal RNA gene (SSU rRNA). M. avidus strains YS1, WS1, YK1 and JJ3 from southern coastal areas and Jeju Island in Korea were pathogenic to olive flounder Paralichthys olivaceus (80 to 100% mortality in 8 to 10 g fish) when inoculated intraperitoneally (i.p.) with 1.0 to 1.4 x 10(6) ciliates fish(-1). Mortality was lower (10 to 45%) when the inoculum was 1.0 to 1.4 x 10(4) ciliates fish(-1) in the i.p.-injected group. The M. avidus strains of YS1, WS1, YK1 and JJ3 caused 60 to 100% mortality by immersion infection with 3.2 to 4.2 x 10(3) ml(-1) in 8 to 10 g fish and 3.0 to 4.0 x 10(3) ml(-1) in 30 to 40 g fish. M. avidus strain Mie0301 from the Mie prefecture in Japan caused 70% mortality by immersion infection with 4.4 x 10(3) ml(-1) in 30 to 40 g fish. The predominant sign was severe abdominal distension in i.p.-injected fish, and extensive ulcer lesions in the skeletal muscle in immersion-infected fish. Numerous ciliates were observed in the ascetic fluid, ulcers, haemorrhagic lesions, gills and brain of infected fish. However, P. persalinus (strain SCL-A), P. hargisi (strain SCL-B) and U. marinum (strain JK3) showed less than 30% mortality from both i.p. and immersion challenges, with no ciliate invasion in the skin, gills or brain. M. avidus-infected fish showed many ciliates in gills, fins, skin muscle, brain and intestine accompanied by necrosis and haemorrhages. However, no histological changes were observed in P. persalinus-, P. hargisi- or U. marinum-infected fish.


Journal of Microbiology | 2008

Genetic variation and geographic distribution of megalocytiviruses.

Jun-Young Song; Shin-Ichi Kitamura; Sung-Ju Jung; Toshiaki Miyadai; Shinji Tanaka; Yutaka Fukuda; Seok-Ryel Kim

Viruses belonging to the genus Megalocytivirus in the family Iridoviridae have caused mass mortalities in marine and freshwater fish in Asian countries. In this study, partial major capsid protein (MCP) gene of seven Japanese and six Korean megalocytiviruses was sequenced and compared with the known megalocytiviruses to evaluate genetic variation and geographic distribution of the viruses. Comparison of MCP gene nucleotide sequences revealed sequence identity of 92.8% or greater among these 48 isolates. A phylogenetic tree clearly revealed three clusters: genotype I including nine Japanese isolates, thirteen Korean isolates, one Chinese isolates, one Thailand isolate and one South China Sea isolate; genotype II including five freshwater fish isolates in Southeast Asian countries and Australia; and the remaining genotype III mainly consisted of flatfish isolate in Korea and China. This suggests that viruses belonging to the genotype I widely distribute among various fish species in many Asian countries. Conversely, the epidemic viruses belonged to genotype II and III are may be still locally spreading and constrained in their prevalence to the limited host fish species, i.e., genotype II viruses mainly distribute in Southeast Asian countries, whereas genotype III viruses distribute in flatfish species in Korea and China.


Journal of Fish Diseases | 2008

Phylogenetic analysis of lymphocystis disease virus from tropical ornamental fish species based on a major capsid protein gene

Mosharrof Hossain; Jun-Young Song; Shin-Ichi Kitamura; Sung-Ju Jung

Lymphocystis disease (LCD) occurs in approximately 100 marine and freshwater fish species (Wolf 1988) and is characterized by clusters of enlarged hypertrophied dermal cells on the skin and fins of affected fish (Wolf 1988). In Korea, LCD is a common fish disease, especially in aquaculture of Japanese flounder, Paralichthys olivaceus (Temminck & Schlegel) and rockfish, Sebastes schlegeli (Hilgendorf) (Kitamura, Jung, Kim, Nishizawa, Yoshimizu & Oh 2006a; Kitamura, Jung & Oh 2006b). The disease rarely causes death but affected fish appear unsightly and lose commercial value. Additionally, in Korean aquarist shops, the disease has been observed in ornamental fish species such as painted glass fish, Chanda baculis (Hamilton), golden gourami, Trichogaster trichopterus (Pallas) and pearl gourami, Trichogaster leeri (Bleeker). The causative agent is lymphocystis disease virus (LCDV), belonging to the genus Lymphocystivirus within the family Iridoviridae, and is characterized by an icosahedral capsid approximately 200 50 nm in diameter, a double-layered capsid with an outer envelope and a fringe of fibril-like external protrusions (Walker 1962; Zwillenberg & Wolf 1968; Wolf 1988). The LCDV genome is a single linear dsDNA molecule, in which the structure is circularly permuted and terminally redundant (Darai, Anders, Koch, Delius, Gelderblom, Samalecos & Flügel 1983; Darai, Delius, Clarke, Apfel, Schnitzler & Flügel 1985; Schnitzler & Darai 1993). Recently, complete genome sequences of two LCDV strains, LCDV-1 from flounder, Platichtys flesus (L.), in Europe and LCDV-C from Japanese flounder in China, were determined. The former is 102 653 bp encoding 195 potential ORFs, while the latter is 186 250 bp with 240 potential ORFs (Tidona & Darai 1997; Zhang, Xiao, Xie, Li & Gui 2004). Comparing the LCDV-1 and LCDV-C genomes, the highest nucleotide sequence identity was observed in a major capsid protein (MCP) gene (78.9%) encoding a single polypeptide with a molecular mass of approximately 50 kDa (Schnitzler & Darai 1993; Tidona & Darai 1997; Zhang et al. 2004). The MCP gene is one of the most important for analysis of genetic relationships among iridoviruses, because its nucleotide sequence is relatively conserved within the family Iridoviridae (Tidona, Schnitzler, Kehm & Darai 1998; Williams, Barbosa-Solomieu & Chinchar 2005). Recently, we reported that at least three genotypes were present in the genus Lymphocystivirus, based on MCP gene sequence and the pathogenicity of lymphocystiviruses: genotype I, consisting of LCDV-1; genotype II, consisting of Japanese flounder isolates and a sea bass isolate; and genotype III, consisting of rockfish isolates (Kitamura et al. 2006a,b). Despite its global importance in freshwater ornamental fish, no genetic information Journal of Fish Diseases 2008, 31, 473–479 doi:10.1111/j.1365-2761.2008.00917.x


Diseases of Aquatic Organisms | 2011

Soft tunic syndrome in the edible ascidian Halocynthia roretzi is caused by a kinetoplastid protist

Akira Kumagai; Atsushi Suto; Hiroshi Ito; Toru Tanabe; Jun-Young Song; Shin-Ichi Kitamura; Euichi Hirose; Takashi Kamaishi; Satoshi Miwa

An etiological study was conducted to clarify whether the flagellate-like cells found in histological preparations of the tunic of diseased Halocynthia roretzi (Drasche) were the causative agent of soft tunic syndrome in this ascidian. When pieces of softened diseased tunic were incubated overnight in sterile seawater, live flagellated cells, which were actively swimming in the seawater, were observed in 47 out of 61 diseased ascidians (77%), but not in moribund or abnormal individuals with normal tunics (n = 36) nor in healthy animals (n = 19). The flagellate was morphologically very similar to those observed in histological sections of the diseased tunic. By contrast, flagellates were not found in tunic pieces of healthy, moribund, and abnormal individuals that did not exhibit softening of the tunic. Light and electron microscopy revealed that the flagellate has polykinetoplastic mitochondria with discoidal cristae. The cytomorphologies of the flagellate were the same as those of the flagellate-like cells in the diseased tunic. We cultured the flagellate from the softened tunic in vitro and confirmed that the tunics of healthy ascidians, which were immersion-challenged with suspensions of the subcultured flagellates, became softened 17 d after exposure, including the final 12 d in aerated, running seawater. The occurrence of flagellates was also confirmed by incubating pieces of soft tunic from experimentally infected animals in seawater overnight. These results indicate that the flagellate is the causative agent of soft tunic syndrome.


Marine Pollution Bulletin | 2008

Does heavy oil pollution induce bacterial diseases in Japanese flounder Paralichthys olivaceus

Jun-Young Song; Kei Nakayama; Yasunori Murakami; Sung-Ju Jung; Satoru Matsuoka; Hidemasa Kawakami; Shin-Ichi Kitamura

As basic research for the effect of heavy oil on the fish immune system, in this study, the number of leukocyte was counted in Japanese flounder Paralichthys olivaceus, after exposure to heavy oil at a concentration of 30 g/8L for 3 days. To compare the numbers of bacteria in the skin mucus between oil-exposed and control fish, viable bacteria were enumerated by counting colony forming unit (CFU). Compared with 5.79+/-1.88 x 10(7)leukocytes/mL in the controls, the exposed fish demonstrated higher counts, averaging 1.45+/-0.45 x 10(8)cells/mL. The bacterial numbers of control fish were 4.27+/-3.68 x 10(4)CFU/g, whereas they were 4.58+/-1.63 x 10(5)CFU/g in the exposed fish. The results suggest that immune suppression of the fish occurred due to heavy oil stressor, and bacteria could invade in the mucus, resulting in the increasing leukocyte number to prevent infectious disease.


Fisheries Science | 2007

Accumulation of organotin compounds and marine birnavirus detection in Korean ascidians

Kaoru Azumi; Shinji Nakamura; Shin-Ichi Kitamura; Sung-Ju Jung; Keisuke Kanehira; Hisato Iwata; Shinsuke Tanabe; Satoru Suzuki

Recently, a serious disease spread extensively in aquaculture sites of the ascidian Halocynthia roretzi in Korea. To understand circumstances of ascidians in Korean aquaculture sites, residue levels of organotin compounds were analyzed, and detection of a marine birnavirus (MABV) in tissues of H. roretzi was attempted. Korean H. roretzi showed high concentrations of butyltins (mono, di, and tributyltins), especially in the gill, hepatopancreas, and digestive tract. However, there was no significant difference in the residues of butyltins in the hepatopancreas between diseased and non-diseased ascidians. The positive rate of MABV detection was high in the hepatopancreas, but also no significant difference was observed between diseased and non-diseased individuals. These observations suggest that an accumulation of tributyltin and a latency of MABV in H. roretzi tissues does not directly relate to the occurrence of the disease.


Journal of Fish Diseases | 2009

Antigenic differences of the scuticociliate Miamiensis avidus from Japan.

Jun-Young Song; K. Sasaki; T. Okada; M. Sakashita; H. Kawakami; S. Matsuoka; H. S. Kang; Kei Nakayama; Sung-Ju Jung; Shin-Ichi Kitamura

In Japan and Korea, outbreaks of scuticociliatosis have frequently occurred in Japanese flounder, Paralichthys olivaceus. Morphological observations and small subunit rRNA gene sequences have shown that the causative agent of scuticociliatosis in the flounder is Miamiensis avidus (syn. Philasterides dicentrarchi). In this study, we elucidated the antigenic differences between six Japanese M. avidus isolates as an initial step toward developing an effective vaccine against the disease. Four Japanese flounder isolates (IyoI, Nakajima, JF05To and Mie0301 isolates), one spotted knifejaw, Oplegnathus punctatus, isolate (SK05Kyo), and one ridged-eye flounder, Pleuronichthys cornutus, isolate (RF05To) were subjected to serological analysis. Antisera against IyoI, SK05Kyo, Nakajima and Mie0301 isolates were raised in rabbits and used for immobilization assays and Western blotting. Immobilization assays showed that the six isolates could be divided into three groups, tentatively designated serotype I for IyoI, JF05To, RF05To, SK05Kyo, serotype II for Nakajima and serotype III for Mie0301. Western blotting results supported these three serotypes, with marked similarities in the banding profiles of IyoI, JF05To, RF05To and SK05Kyo isolates, which were distinct from the Nakajima and Mie0301 isolates. Three isolates, IyoI, Nakajima and Mie0301 that were selected as representatives of each serotype, were highly pathogenic to Japanese flounder by experimental infection. Based on these findings, we propose that there are at least three M. avidus serotypes in Japan.


Diseases of Aquatic Organisms | 2012

Azumiobodo hoyamushi gen. nov. et sp. nov. (Euglenozoa, Kinetoplastea, Neobodonida): a pathogenic kinetoplastid causing the soft tunic syndrome in ascidian aquaculture

Euichi Hirose; Akino Nozawa; Akira Kumagai; Shin-Ichi Kitamura

We used morphological and genetic analyses to investigate a pathogenic kinetoplastid isolated from a diseased edible ascidian Halocynthia roretzi with soft tunic syndrome. The morphological characteristics of the kinetoplastid are similar to those in the order Neobodonida in the subclass Metakinetoplastida. However, the presence of unique globular bodies distinguishes this kinetoplastid from the other polykinetoplastic genera (i.e. Cruzella, Dimastigella and Rhynchobodo) in this order. These globular bodies are cytoplasmic inclusions without an outer delimiting membrane and are composed of a homologous granular matrix containing electron-dense bands. A phylogenetic tree based on 18S rRNA gene sequences also indicated that the kinetoplastid belongs to the order Neobodonida, although it forms an independent clade in this order. From these results, we propose a new genus in the order Neobodonida, i.e. Azumiobodo gen. nov., and Azumiobodo hoyamushi as the type species for the genus.


Marine Pollution Bulletin | 2008

Effects of heavy oil in the developing spotted halibut, Verasper variegatus.

Yasunori Murakami; Shin-Ichi Kitamura; Kei Nakayama; Satoru Matsuoka; Hideo Sakaguchi

It is well known that heavy oil (HO) on the sea surface causes serious problems in the aquatic environment. In particular, some species of teleosts which develop on the sea surface are thought to be affected by the HO which flows out from tankers or coastal industry. However, the toxicological effects of HO are not fully understood. We performed exposure experiments using the Pleuronectiformean fish, spotted halibut (Verasper variegatus), which is an important fishery resource in Japan. In course of the development, HO-exposed embryos showed remarkable delay in developmental processes including somite formation. We further observed abnormal development of the head morphology. Notably, treated embryos had relatively small eyes and craniofacial structures. These findings strongly suggest that HO seriously affects the cell proliferation and differentiation of the embryo. In addition, HO-exposed embryos showed abnormal neuronal development. We also performed the exposure in the larval stage. Treatment of post-hatching larvae with HO resulted in significantly greater mortality compared with controls. Through these observations, we finally conclude that HO is strongly toxic to halibut in their early life stages.

Collaboration


Dive into the Shin-Ichi Kitamura's collaboration.

Top Co-Authors

Avatar

Sung-Ju Jung

Chonnam National University

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Seok-Ryel Kim

Chonnam National University

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge