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Dive into the research topics where Shin-ichi Nakano is active.

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Featured researches published by Shin-ichi Nakano.


Limnology | 2001

Dynamics of cyanophage-like particles and algicidal bacteria causing Microcystis aeruginosa mortality

Pathmalal M. Manage; Zen’ichiro Kawabata; Shin-ichi Nakano

Abstract The dynamics of cyanophage-like particles and algicidal bacteria that infect the bloom-forming cyanobacterium Microcystis aeruginosa was followed in a hyper-eutrophic pond from September 1998 to August 1999. The densities of M. aeruginosa ranged between 4.0 × 105 and 1.9 × 107 cells ml−1, whereas those of algicidal bacteria were between 4.0 and 5.1 × 102 plaque-forming units (PFU) ml−1 and those of cyanophage-like particles were between <5.0 × 102 and 7.1 × 103 PFU ml−1. A significant relationship was found between the densities of algicidal bacteria and M. aeruginosa (r = 0.81, n = 69, P < 0.001), suggesting that the dynamics of the algicidal bacteria may regulate the abundance of M. aeruginosa. Occasional peaks of density of cyanophage-like particles were detected in October, June, and August, when sharp declines in M. aeruginosa cell densities were also observed. The densities of cyanophage-like particles became undetectable when the abundance of M. aeruginosa was low, suggesting the density-dependent infection of M. aeruginosa by cyanophage-like particles. Thus, we suggest that infections of both algicidal bacteria and cyanophage-like particles are important biological agents that decompose blooms of M. aeruginosa in freshwater environments.


Oecologia | 2008

Drifting plankton from a reservoir subsidize downstream food webs and alter community structure

Hideyuki Doi; Kwang-Hyeon Chang; Takamitsu Ando; Hiroyuki Imai; Shin-ichi Nakano; Akio Kajimoto; Izumi Katano

Subsidy between ecosystems has been considered in many natural ecosystems, and should alter food webs and communities in human-impacted ones. We estimated how drifting plankton from a reservoir contribute to downstream food webs and showed that they alter community structures over a 10-km reach below the dam. To estimate the contribution of the drifting plankton to macroinvertebrates, we used C and N isotopes and an IsoSource mixing model. In spring and autumn, contributions of plankton to collector-filterer species were highest 0.2xa0km downstream of the dam, and clearly decreased from 0.2 to 10xa0km. At 0.2xa0km, the contribution of plankton to a predator stonefly was remarkably high. These results indicated that drifting plankton from a dam reservoir could subsidize downstream food webs and alter their energy base, but the importance of this subsidy decreased as distance from the reservoir increased. The general linear models indicated that the abundance of collector-filterers and predators was related positively to zooplankton density in stream water. Thus, food source alteration by drifting plankton also influenced the community structures downstream of the dam.


Hydrobiologia | 1999

Seasonal changes in densities of cyanophage infectious to Microcystis aeruginosa in a hypereutrophic pond

Pathmalal M. Manage; Zen'ichiro Kawabata; Shin-ichi Nakano

Seasonal changes in densities of cyanophages infectious to Microcystis aeruginosa were studied in a hypereutrophic pond from March 1997 to January 1998 to elucidate the potential impact of the cyanophage on M. aeruginosa mortality. Densities of M. aeruginosa ranged between 1.8 × 104 and 9.4 × 105 cells ml-1, while those of the cyanophages were between 2.0 × 102 and 4.2 × 104 PFU ml-1. Sharp decreases in densities of M. aeruginosa were detected on 10 June and 24 September, as densities of the cyanophages increased, suggesting release of the cyanophages due to the lysis of infected M. aeruginosa. Thus, infection by cyanophages may have a substantial effect on cyanobacterial succession in the pond. Densities of cyanophages became undetectable when those of M. aeruginosa were at low levels during winter. We suggest that there is a tight host-pathogen relationship between M. aeruginosa and the cyanophage in the pond.


Limnology | 2008

Longitudinal changes in zooplankton distribution below a reservoir outfall with reference to river planktivory

Kwang-Hyeon Chang; Hideyuki Doi; Hiroyuki Imai; Fusako Gunji; Shin-ichi Nakano

The fate and interactions with river organisms of zooplankton as they drift downriver from a reservoir on a fourth-order mountain stream (Hiji River, Japan) were investigated. Monthly samples were collected at the reservoir and six river sites, simultaneously, from May 2005 to May 2006. Aquatic macroinvertebrates and fish were colleted, and their stomach contents were analyzed in April and May, 2006, respectively. Drift from the reservoir was the primary source for the river plankton community; the abundance of zooplankton, particularly those of cladocerans and large rotifer, rapidly decreased within several kilometers of the dam. Analysis of the contents of fish stomachs showed that drifting zooplankton was the main food for fish, with strong food selectivity for cladocerans and large rotifers. However, fish and insect planktivores showed longitudinally different stomach contents, with progressively fewer zooplankton found in the stomachs at the downriver sites. The results suggest that the outflow of zooplankton from the reservoir is an important food source for the downstream predators, especially fish, but the drift of zooplankton and consequent food availability for the predators at lower sites are strongly limited by concentrated fish predation just below the reservoir dam.


Limnology | 2004

Trophic coupling of a testate amoeba and Microcystis species in a hypertrophic pond

Yuichiro Nishibe; Pathmalal M. Manage; Zen’ichiro Kawabata; Shin-ichi Nakano

Seasonal changes in abundance of the testate amoeba Penardochlamys sp. and its food vacuole contents were investigated in relation to blooms of the cyanobacteria Microcystis spp. in a hypertrophic pond from April 1999 to March 2000. The behavior of the amoeba feeding on M. aeruginosa and M. wesenbergii was also observed in the laboratory. The amoeba was detectable from late May to November 1999 during the blooms of Microcystis spp. Cell densities of the amoeba fluctuated between 1.4 and 350 cells ml−1 with some sporadic peaks, which did not coincide with rapid decreases in the abundance of Microcystis spp. Food vacuoles contained only Microcystis cells; other prey items were not found, suggesting that this amoeba utilized only the cyanobacteria as food. The amoeba was frequently found attached to Microcystis colonies, but was not associated with other suspended particles. Observation of the amoeba feeding revealed the feeding mechanism and that the amoeba was able to graze on both species of Microcystis. These results suggest that the trophic coupling of these organisms is substantial, although grazing by the amoeba is not sufficient to regulate the dynamics of Microcystis populations in this hypertrophic pond.


Aquatic Ecology | 2005

Abundance, growth and grazing loss rates of picophytoplankton in Barguzin Bay, Lake Baikal

Toshiya Katano; Shin-ichi Nakano; Hiroyuki Ueno; Osamu Mitamura; Kaori Anbutsu; Masaki Kihira; Yasuhiro Satoh; Valentin V. Drucker; Masahito Sugiyama

The abundance, growth, and grazing loss rates of picophytoplankton were investigated in August 2002 in Barguzin Bay, Lake Baikal. Water samples for incubation were taken once at a near-shore station and twice at an offshore station. Contributions of picophytoplankton to total phytoplankton were high (56.9–83.9%) at the offshore station and low (5.8–6.8%) at the near-shore station. The picophytoplankton community in the offshore station comprised mainly phycoerythrin (PE)-rich cyanobacteria, with eukaryotic picophytoplankton being less abundant. In contrast, as well as PE-rich cyanobacteria and eukaryotic picophytoplankton, phycocyanin (PC)-rich cyanobacteria were found in the near-shore station. At the offshore station, growth and grazing loss rates on 25 August were 0.56 and 0.43xa0day−1, respectively, and on 29 August, 0.69 and 0.83xa0day−1, respectively. At the near-shore station, growth and grazing loss rates were 1.61 and 0.70xa0day−1, respectively. These results show that there is a difference in the abundance, composition, and ecological role in the microbial food web of picophytoplankton between the near-shore and the offshore areas in Barguzin Bay.


Ecological Research | 2002

Effect of heterotrophic nanoflagellates on the loss of virus‐like particles in pond water

Pathmalal M. Manage; Zen’ichiro Kawabata; Shin-ichi Nakano; Yuichiro Nishibe

A decrease in the abundance of virus-like particles (VLP) by heterotrophic nanoflagellates (HNF) was examined using size-fractionated water samples taken from a hypereutrophic pond in December 1999, and in March and July 2000. We recorded a considerable decrease in the abundance of VLP in the 5.0u2009µm filtrate relative to the 0.2–0.8u2009µm filtrates. Decrease rates of VLP were reduced in a parallel 5.0u2009µm filtrate treated with cycloheximide. The loss rates of VLP in 5.0u2009µm filtrate varied in each experiment, and a high rate of loss was found when the growth rate of HNF was high. These results suggested that HNF consumed the VLP and that HNF is an important factor for decreasing viral abundance in freshwater environments.


Limnology | 2000

Effect of cyanobacterial blooms on thermal stratification

Michio Kumagai; Shin-ichi Nakano; Chunmeng Jiao; Kazuhide Hayakawa; Shigeo Tsujimura; T. Nakajima; J.-J. Frenette; A. Quesada

Abstract Enclosure experiments were performed at Akanoi Bay, Lake Biwa, in 1995 to determine whether the blooms of cyanobacterial algae changed thermal stratification in the lake. We used four rectangular enclosures, each 10 m × 10 m, with a volume of 200 m3, which were open to the sediments. Two enclosures, A and B, were mixed artificially by aquatic pumps from 1000 to 1400 every day, and the other two enclosures, C and D, were controls with no mixing. The experiment was conducted during late summer from August 3 to September 27. Chlorophyll a concentrations were highest in enclosure D, followed by enclosure C, both of which were controls without mixing. Enclosure A had lower concentrations than enclosures C and D, and enclosure B had the lowest concentrations. No large cyanobacterial algae blooms of Anabaena sp. and Microcystis sp. were seen in the mixed enclosures A and B. In enclosures C and D, blooms of Anabaena sp. occurred in the middle of August, and Microcystis sp. later became dominant in enclosure D at the end of August. In enclosure D, the water temperature changed over the diel cycle before August 17, with thermal stratification during the day and complete mixing at night. After August 17, as Anabaena sp. and Microcystis sp. became dominant, the temperature at the bottom of the enclosure did not change clearly over the 24-h cycle. The APE (available potential energy) density (a measure of water column stability) in the enclosures increased by almost 100% when the biovolume of Anabaena sp. + Microcystis sp. exceeded 20 mm3 l−1. These results indicate that blooms of Anabaena sp. and Microcystis sp. can increase the available potential energy in the water column and create more stable stratification for their growth.


Microbial Ecology | 2006

Assessing Primary and Bacterial Production Rates in Biofilms on Pebbles in Ishite Stream, Japan

Miwa Fukuda; Junya Matsuyama; Toshiya Katano; Shin-ichi Nakano; Frank B. Dazzo

Various measurements of microbial productivity in streambed pebble biofilms were analyzed almost monthly for 1 year to quantify the importance of primary production as an autochthonous source of organic matter utilized to support heterotrophic bacterial production in the dynamic food web within this natural microbial habitat. Bacterial density varied from 0.3 × 108 to 1.4 × 108 cells cm−2, and chlorophyll a concentration ranged from 0.7 to 25.9xa0μg cm−2, with no coupled oscillation between seasonal changes in these two parameters. In bottle incubation experiments, the instantaneous bacterial growth rate of bacteria was significantly correlated with their production rate [measured by frequency of dividing cells (FDC)] as follows: ln μ = 0.138FDC − 3.003 (n = 15, r2 = 0.445, p < 0.001). FDC values in the pebble biofilms increased with fluctuations during the study period, ranging from 3.6% to 9.2%. Bacterial production rates largely fluctuated between 0.15 to 0.92xa0μg C cm−2 h−1, and its seasonal pattern was similar to that of bacterial density. Net primary production measured between May 2002 to November 2002 attained minimum level (0.5xa0μg C cm−2 h−1) in June and maximum level (1.9xa0μg C cm−2 h−1) in August. Percentages of bacterial production to net primary production ranged between 21% and 120%. Because this ratio extends both below and above 100% for these parameters, it is likely that both autochthonous and allochthonous supplies of organic matter are important for production of bacteria in the pebble biofilms that develop in rapidly flowing fresh water streams.


Aquatic Ecology | 2003

Seasonal changes in the abundance of autotrophic picoplankton and some environmental factors in hypereutrophic Furuike Pond

Miho Hirose; Yuichiro Nishibe; Masaya Ueki; Shin-ichi Nakano

Seasonal change in the abundance of autotrophic picoplankton (APP) was investigated once or twice a week in relation to some environmental variables in a hypereutrophic pond, from July 1999 to June 2000. Cell density of APP ranged between 0.3×105 and 10.1×105xa0cellsxa0ml−1, overlapping the lower range of APP abundances given in the literature for hypereutrophic systems. The pattern of seasonal change in concentration of dissolved inorganic phosphorus (0.3–20.3xa0μxa0molxa0Pxa0l−1) was similar to that of cell density of APP, suggesting that phosphorus limitation on APP abundance. By contrast, nitrogen limitation seemed unlikely since the pattern of seasonal change in concentration of dissolved inorganic nitrogen was different from that of APP cell density. We could not find any coupled oscillations between APP abundance and heterotrophic nanoflagellates, or between that of APP and ciliates. The dominant ciliate taxa, based on their cell densities, were Cinetochilum margaritaceum, Cyclidium glaucoma, Halteria grandinella, Strobilidium sp. and Urotricha spp. The relative contribution of the <u20092xa0μm fraction to total chlorophyll concentration was seasonally high (up to 16.2%), indicating seasonal importance of APP abundance as food for heterotrophs.

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Osamu Mitamura

University of Shiga Prefecture

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