Shin Ugawa

Vertical patterns of fine root biomass, morphology and nitrogen concentration in a subalpine fir-wave forest

To clarify the nutrient acquisition strategies for below-ground resources in a subalpine Abies forest with shallow soils, we examined the vertical patterns of fine root biomass, morphology, nitrogen concentration of fine root tissue and soil chemical characteristics in nine quadrats of sapling, young and mature stands in a subalpine fir-wave forest, central Japan. The community characteristics changed with stand development, but stand development did not influence the vertical pattern of fine root characteristics. Fine root biomass decreased with soil depth. Specific root length did not differ among soil depths, and neither average diameter nor tissue density of fine roots changed vertically. The nitrogen concentration of fine roots differed significantly among soil depths, and was higher in surface soils than in deeper soils. Moreover, soil pH, soil electrical conductivity and soil nitrogen concentration were higher in surface layers than deeper layers. Therefore, we suggest that the subalpine Abies community has a nutrient acquisition strategy that allows uptake of more nutrients near the surface in shallow soils due to the larger investment in biomass and more active metabolism, but not due to phenotypic plasticity in fine root morphology. In addition, we observed that fine root biomass changed with stand development, where specific root length was greater in sapling stands than in older stands.

A method for obtaining the relationship between the amount of DNA and the fine root weight from mixtures of fine roots and soil particles

Fine root biomass can be estimated from the quantity of DNA of a target plant extracted from fine root samples using regression analysis. However, the application of this method to fine root samples mixed with soil particles (mixed samples) is difficult due to the high DNA adsorption capacity of some clay minerals. Our aim in this study was to clarify the enhancement level of the DNA extraction efficiency of an improved method, and to obtain a regression line between the amount of DNA and the root biomass from a mixed sample with similar reliability as for fine roots alone (pure root sample). We examined the amount of DNA extracted from a mixture of Zea mays L. fine roots and highly adsorbent Kanuma soil using various concentrations of a skim milk solution, which acts as an adsorption competitor for the soil particles during the DNA extraction process. The amount of DNA of Zea mays extracted from the mixed sample using 0% skim milk was lower than from the pure root sample. However, the amount of DNA extracted from the mixed sample increased with increasing concentrations of skim milk, reaching the same level as for the pure root samples and resulting in a regression line that was similar to the pure root samples. Optimal DNA extraction levels were obtained with the addition of 20 µL of a 20% skim milk solution to 30 mg of a mixed sample. We also discuss the applicability of this method to other plant species and soil types.

Characteristics of culm structure and carbon and nitrogen concentrations in dead bamboo culms of two Phyllostachys species

The tissue structure of a bamboo stem (culm) differs from that of woody species, exhibiting a large cavity in the internode surrounded by a cortex with high silica concentration. Thus, to obtain an accurate estimation of the necromass, as well as carbon (C) and nitrogen (N) stocks in dead bamboo culms, we examined the basic characteristics of culm structure as well as the C and N concentrations of decomposing culms of Phyllostachys bambusoides and P. heterocycla. We collected dead culms of the two bamboo species from 15 bamboo stands in central and southwestern Japan, and analyzed the relationship between the ratio of wall volume to culm disk volume and culm diameter, as well as the changes of C and N concentrations in dead culms with wall density, which can be used as an indicator of the degree of decomposition. The ratio of wall volume to culm volume tended to decrease with increasing culm diameter for both species. The C concentration did not change, but the N concentration increased with decreasing wall density. The wall density was related to the C/N ratio, which is a chemical parameter of the degree of decomposition. The culm structure should be considered when estimating culm density. The mean C concentration can be used for estimating the C stock of decomposing culms irrespective of decomposition level. N concentration, however, should be determined according to decomposition level for N stock estimation.

Root-tip diameters of woody species in subalpine Abies forest

We clarified the differences in root-tip diameter (RTD) among tree and shrub species in an Abies forest. To evaluate the effects of sampling month and tree size on RTD, we measured the root-tip diameters of mature individuals of nine woody species and sapling individuals of two Abies species in a subalpine Abies forest on Mount Shimagare in central Japan. Species, sampling month, and their interaction affected RTD; however, the differences in RTD between some pairs of species were consistent across sampling months. The woody species fell into two groups, based on RTD size: tree species with larger RTDs (group 1) and shrub species with smaller RTDs (group 2). Seasonal changes in RTD were observed in three species and showed different patterns among species. Tree size did not affect RTD for either Abies species; however, there was an interaction between tree size and sampling month for Abies veitchii. The woody species category had the greatest effect on RTD, followed by sampling month and then tree size.

The response of ectomycorrhizal fungi on Pinus densiflora seedling roots to liquid culture

Japanese red pine (Pinus densiflora) seedlings taken from a nursery were grown in liquid culture with all roots entirely submerged in water. The aims of the present study were to observe the reactions of preformed ectomycorrhizae to liquid culture and to examine new infections by ectomycorrhizal fungi on newly formed root tips in liquid culture. Inoculation levels were controlled by trimming the ectomycorrhizal roots to one of three selected root lengths. The results showed that the mantles of pre-formed ectomycorrhizae were lost during the 8 weeks of the liquid culture and that these preformed root tips became blackish and wrinkled, but Hartig nets remained in these blackish root tips. On the newly formed lateral root tips, no ectomycorrhizal mantles were formed, although Hartig nets were found. In addition, the level of inoculum did not affect the frequency of Hartig nets in newly formed root tips, suggesting that the density of inoculum was more important than the amount of inoculum for new infection. In conclusion, ectomycorrhizal fungi endured and infected new roots while submerged; however, only Hartig nets were formed and not mantles.

Accuracy criteria for measuring carbon and nitrogen concentrations in forest soil and litter samples

Abstract To establish accuracy criteria for measurements of carbon and nitrogen concentrations in forest litter and mineral soil, we examined the change in the coefficient of variance (CV) with the number of measurement repetitions, the distribution of CVs and the effect of analytical error on the variation of CV to suggest a threshold for detecting outliers. We analyzed the measurement values of 266 soil samples and 73 litter samples collected from various forests throughout Japan. The CV changed with the number of measurement values for soil samples, but not for litter samples. This finding suggested that the accuracy criterion of the CV of two measurement values should be applied only to CVs calculated from two measurement values. When the CV was calculated from two measurement values, variation in the CV did not differ among carbon concentration classes of soil samples; however, the variation did differ among carbon concentration classes of litter samples and nitrogen concentration classes of litter and soil samples. These differences suggested that accuracy criterion should be independently decided in each carbon and nitrogen concentration class. Variation in the CV was not strongly affected by the analytical error because variation in the blank value was very small compared with variation in the CV. The distribution of the CV did not differ from the normal distribution for litter samples, but it did differ for soil samples. Thus, we used the robust Huber’s m-estimator outlier test to decide a threshold to represent the accuracy criterion. The threshold value was almost constant among carbon concentration classes both for soil and litter samples, with mean values of 3.6% and 2.6%, respectively. Conversely, the threshold of outliers of soil and litter samples varied among nitrogen concentration classes. This suggested using different thresholds for each nitrogen concentration class. Moreover, by applying the calculated thresholds we showed that outliers accounted for approximately 30% of the data in almost all carbon and nitrogen concentration classes for soil samples and less than 20% in almost all carbon and nitrogen concentration classes for litter samples.