Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Shinichi Taoka is active.

Publication


Featured researches published by Shinichi Taoka.


Journal of Inorganic Biochemistry | 2001

Characterization of NO binding to human cystathionine β-synthase:: Possible implications of the effects of CO and NO binding to the human enzyme

Shinichi Taoka; Ruma Banerjee

Homocysteine is a key junction metabolite that can be converted to cystathionine in a reaction catalyzed by the heme and pyridoxal phosphate-dependent cystathionine beta-synthase. The heme has unusual spectroscopic properties and the axial ligands have been assigned as histidine and cysteine, respectively. Its role in the protein is not obvious from the chemistry of the beta-replacement reaction that is catalyzed. We have characterized the binding of the gaseous signaling molecule, NO, to cystathionine beta-synthase and examined its effect on the reactions catalyzed by the truncated dimeric form of the enzyme, W409X, which is a natural variant. Binding of NO appears to result in the formation of a five-coordinate ferrous nitrosyl species in which both endogenous ligands have been lost. This is in contrast to CO binding which is reported to displace the thiolate ligand and form a six-coordinate species. NO binds to the full-length enzyme with a K(d) of 281+/-50 microM and to the truncated enzyme with a K(d) of 350+/-44 microM. Binding of NO to the full-length enzyme inhibits activity with a K(i) of 320+/-60 microM. These studies demonstrate that as with CO, perturbation of the heme environment by NO is communicated to the active site with concomitant inhibition of enzyme activity, and suggests a regulatory role for heme in cystathionine beta-synthase.


Journal of Biological Chemistry | 2006

Dynamics of Carbon Monoxide Binding to Cystathionine β-Synthase

Mrinalini Puranik; Colin L. Weeks; Dorothée Lahaye; Omer Kabil; Shinichi Taoka; Steen Brøndsted Nielsen; John T. Groves; Ruma Banerjee; Thomas G. Spiro

Cystathionine β-synthase (CBS) condenses homocysteine, a toxic metabolite, with serine in a pyridoxal phosphate-dependent reaction. It also contains a heme cofactor to which carbon monoxide (CO) or nitric oxide can bind, resulting in enzyme inhibition. To understand the mechanism of this regulation, we have investigated the equilibria and kinetics of CO binding to the highly active catalytic core of CBS, which is dimeric. CBS exhibits strong anticooperativity in CO binding with successive association constants of 0.24 and 0.02 μm-1. Stopped flow measurements reveal slow CO association (0.0166 s-1) limited by dissociation of the endogenous ligand, Cys-52. Rebinding of CO and of Cys-52 following CO photodissociation were independently monitored via time-resolved resonance Raman spectroscopy. The Cys-52 rebinding rate, 4000 s-1, is essentially unchanged between pH 7.6 and 10.5, indicating that the pKa of Cys-52 is shifted below pH 7.6. This effect is attributed to the nearby Arg-266 residue, which is proposed to form a salt bridge with the dissociated Cys-52, thereby inhibiting its protonation and slowing rebinding to the Fe. This salt bridge suggests a pathway for enzyme inactivation upon CO binding, because Arg-266 is located on a helix that connects the heme and pyridoxal phosphate cofactor domains.


Journal of Inorganic Biochemistry | 2001

Mercuric chloride-induced spin or ligation state changes in ferric or ferrous human cystathionine β-synthase inhibit enzyme activity

Shinichi Taoka; Edward L. Green; Thomas M. Loehr; Ruma Banerjee

Cystathionine beta-synthase is a key heme and pyridoxal phosphate-dependent enzyme involved in homocysteine metabolism in humans. The role of the recently discovered heme in this protein remains an important open question. The axial ligands to the heme in both the ferrous and ferric states have been assigned as cysteine and histidine residues, respectively. In this study, we have examined the effect of ligation and spin state changes in the heme on the activity of the enzyme. Treatment of the ferric enzyme with HgCl2 results in the conversion of six-coordinate low-spin heme to five-coordinate high-spin heme and is paralleled by a loss of activity. In contrast, treatment of the ferrous enzyme with HgCl2 results in replacement of the cysteine ligand by an unidentified sixth ligand and retention of the six-coordinate state, and is also accompanied by loss of enzyme activity. Treatment of the five-coordinate HgCl2-treated enzyme with thiols, such as homocysteine, results in reversion to a six-coordinate state. Resonance Raman spectroscopy with 34S-labeled enzyme reveals the return of the endogenous thiol ligand under these conditions and rules out direct coordination by the thiolate of homocysteine to the heme.


Biochemistry | 2002

Human cystathionine β-synthase is a heme sensor protein. Evidence that the redox sensor is heme and not the vicinal cysteines in the CXXC motif seen in the crystal structure of the truncated enzyme

Shinichi Taoka; Bryan W. Lepore; Omer Kabil; Sunil Ojha; Dagmar Ringe; Ruma Banerjee


Journal of the American Chemical Society | 1995

Coenzyme B12 Is Coordinated by Histidine and Not Dimethylbenzimidazole on Methylmalonyl-CoA Mutase

Rugmini Padmakumar; Shinichi Taoka; Raghavaikamal Padmakumar; Ruma Banerjee


Journal of Biological Chemistry | 1994

Inhibition of the human methylmalonyl-CoA mutase by various CoA-esters.

Shinichi Taoka; Raghavakaimal Padmakumar; Ming-Tain Lai; Hung-Wen Liu; Ruma Banerjee


Biochemistry | 1995

Structural and electronic similarity but functional difference in methylmalonyl-CoA mutase between coenzyme B12 and the analog 2,'5'-dideoxyadenosylcobalamin

Antonia M. Calafat; Shinichi Taoka; James M. Puckett; Craig Semerad; Hon Yan; Laibin Luo; Huilan Chen; Ruma Banerjee; Luigi G. Marzilli


Journal of Biological Chemistry | 2002

Stopped-flow Kinetic Analysis of the Reaction Catalyzed by the Full-length Yeast Cystathionine β-Synthase

Shinichi Taoka; Ruma Banerjee


Journal of Biotechnology | 2007

Cell bank characterization and fermentation optimization for production of recombinant heavy chain C-terminal fragment of botulinum neurotoxin serotype E (rBoNTE(Hc): Antigen E) by Pichia pastoris

Jayanta Sinha; Mehmet Inan; Sarah Fanders; Shinichi Taoka; Mark Gouthro; Todd Swanson; Rick Barent; Ardis Barthuli; Bonnie M. Loveless; Leonard A. Smith; Theresa J. Smith; Ian Henderson; John T. Ross; Michael M. Meagher


Bioelectromagnetics | 1997

Magnetic field effects on coenzyme B12-dependent enzymes: Validation of ethanolamine ammonia lyase results and extension to human methylmalonyl CoA mutase

Shinichi Taoka; Raghavakaimal Padmakumar; Charles B. Grissom; Ruma Banerjee

Collaboration


Dive into the Shinichi Taoka's collaboration.

Top Co-Authors

Avatar
Top Co-Authors

Avatar

Raghavakaimal Padmakumar

University of Nebraska–Lincoln

View shared research outputs
Top Co-Authors

Avatar

Omer Kabil

University of Nebraska–Lincoln

View shared research outputs
Top Co-Authors

Avatar

Rugmini Padmakumar

University of Nebraska–Lincoln

View shared research outputs
Top Co-Authors

Avatar

Antonia M. Calafat

University of Nebraska–Lincoln

View shared research outputs
Top Co-Authors

Avatar

Ardis Barthuli

University of Nebraska–Lincoln

View shared research outputs
Top Co-Authors

Avatar

Bonnie M. Loveless

United States Army Medical Research Institute of Infectious Diseases

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge