Shio Makino

A spore-lytic enzyme released from Bacillus cereus spores during germination.

The exudate of fully germinated spores of Bacillus cereus IFO 13597 in 0.25 M sodium phosphate buffer, pH 7.0, was found to contain a spore-lytic enzyme. This enzyme was found to cause loss of absorbance in coat-stripped spore suspensions and phase-darkening of the spores but had minimal activity on isolated peptidoglycan substrates. The enzyme was purified in an active form and identified as a 24 kDa protein which is either an amidase or a peptidase. The amino-terminal 19 residues had the following sequence: FSNQVIQRGASGEKVIELQ. The spore-lytic enzyme retained its activity in a medium of a relatively high ionic strength containing a non-ionic surfactant such as nonaethyleneglycol n-dodecyl ether. This activity was optimum at a salt concentration of about 30 mM in assay buffer at neutral pH. In contrast to the enzyme in a spore-bound form, the enzyme in solution was shown to be heat-sensitive and was readily inactivated by thiol reagents.

A novel spore peptidoglycan hydrolase of Bacillus cereus: biochemical characterization and nucleotide sequence of the corresponding gene, sleL.

The exudate of germinated spores of B. cereus IFO 13597 in 0.15 M KCl-50 mM potassium phosphate (pH 7.0) contained a spore-lytic enzyme which has substrate specificity for fragmented spore cortex from wild-type organisms (cortical-fragment-lytic enzyme [CFLE]), in addition to a previously characterized germination-specific hydrolase which acts on intact spore cortex (spore cortex-lytic enzyme [SCLE]) (R. Moriyama, S. Kudoh, S. Miyata, S. Nonobe, A. Hattori, and S. Makino, J. Bacteriol. 178:5330-5332, 1996). CFLE was not capable of degrading isolated cortical fragments from spores of Bacillus subtilis ADD1, which lacks muramic acid delta-lactam. This suggests that CFLE cooperates with SCLE in cortex hydrolysis during germination. CFLE was purified in an active form and identified as a 48-kDa protein which functions as an N-acetylglucosaminidase. Immunochemical studies suggested that the mature enzyme is localized on a rather peripheral region of the dormant spore, probably the exterior of the cortex layer. A gene encoding the enzyme, sleL, was cloned in Escherichia coli, and the nucleotide sequence was determined. The gene encodes a protein of 430 amino acids with a deduced molecular weight of 48,136. The N-terminal region contains a repeated motif common to several peptidoglycan binding proteins. Inspection of the data banks showed no similarity of CFLE with N-acetylglucosaminidases found so far, suggesting that CFLE is a novel type of N-acetylglucosaminidase. The B. subtilis genome sequence contains genes, yaaH and ydhD, which encode putative proteins showing similarity to SleL.

A gene (sleC) encoding a spore-cortex-lytic enzyme from Clostridium perfringens S40 spores ; cloning, sequence analysis and molecular characterization

Antiserum was raised against a 31 kDa spore-cortex-lytic enzyme, which is released during germination of Clostridium perfringens S40 spores. Western blotting of dormant spore and vegetative cell fractions separated by SDS-PAGE indicated that the 31 kDa enzyme is spore-specific and that the enzyme in the dormant spore exists as a 36 kDa protein which has no cortex-lytic activity. A gene encoding the 31 kDa enzyme, sleC, was cloned into Escherichia coli using a synthetic oligonucleotide as a hybridization probe and the nucleotide sequence of the entire gene was determined. The N-terminal amino acid sequence of the 36 kDa protein was found in this reading frame, confirming that the 36 kDa protein is a pro-form of the 31 kDa enzyme. The deduced amino acid sequence indicated that the 31 kDa enzyme is produced as a precursor, comprising three portions; an N-terminal prepro-sequence (114 amino acid residues), a pro-sequence (35 amino acid residues) and a mature enzyme (289 amino acid residues). It is suggested that the 36 kDa pro-enzyme is non-covalently attached to the exterior of the cortex layer, and that the proform is processed to release the active enzyme during germination.

Mode of Action of a Germination-Specific Cortex-Lytic Enzyme, SleC, of Clostridium perfringens S40

The hydrolysis of the bacterial spore peptidoglycan (cortex) is a crucial event in spore germination. It has been suggested that SleC and SleM, which are conserved among clostridia, are to be considered putative cortex-lytic enzymes in Clostridium perfringens. However, little is known about the details of the hydrolytic process by these enzymes during germination, except that SleM functions as a muramidase. Muropeptides derived from SleC-digested decoated spores of a Bacillus subtilis mutant that lacks the enzymes, SleB, YaaH and CwlJ, related to cortex hydrolysis were identified by amino acid analysis and mass spectrometry. The results suggest that SleC is most likely a bifunctional enzyme possessing lytic transglycosylase activity and N-acetylmuramoyl-L-alanine amidase activity confined to cross-linked tetrapeptide-tetrapeptide moieties of the cortex structure. Furthermore, it appears that during germination of Clostridium perfringens spores, SleC causes merely small and local changes in the cortex structure, which are necessary before SleM can function.

Detection of the associated state of membrane proteins by polyacrylamide gradient gel electrophoresis with non-denaturing detergents Application to band 3 protein from erythrocyte membranes

Polyacrylamide gradient gel electrophoresis was carried out in micellar solutions of various detergents which differ in degree of potency to denature proteins. From the application of this method to band 3 protein from erythrocyte membranes, it was suggested that the procedure was useful in studying the molecular state of membrane proteins. The electrophoretic behaviors of human and bovine band 3 protein did not show any species specificity in either a denature state and a state resembling the native state. As well as in nonionic detergent solutions, the dimeric and tetrameric structures of bovine band 3 protein were preserved in sodium deoxycholate solution, in which protein complexes maintained in nonionic detergent solutions are frequently dissociated. Even in dodecyltrimethylammonium bromide solution, which is a denaturant for water-soluble proteins, part of the band 3 protein was still present as the oligomer. The results suggest that the oligomeric form of band 3 protein is the stable structure and that the dimer and tetramer possibly coexist in membranes.

The N‐terminal prepeptide is required for the production of spore cortex‐lytic enzyme from its inactive precursor during germination of Clostridium perfringens S40 spores

A spore cortex‐lytic enzyme of Clostridium perfringens S40 is synthesized during sporulation as a precursor consisting of four domains. After cleavage of an N‐terminal preregion and a C‐terminal proregion, inactive proenzyme (termed C35) is converted to active enzyme by processing of an N‐terminal prosequence with germination‐specific protease (GSP) during germination. The present results demonstrated that the cleaved N‐terminal prepeptide remained associated with C35. After the isolated complex was denatured and dissociated in 6 M urea solution, removal of urea regenerated a prepeptide–C35 complex which produces active enzyme when incubated with GSP. However, isolated C35 alone could not be activated by GSP. The prepeptide–C35 complex was more heat stable than active enzyme. Thus, non‐covalent attachment of the prepeptide to C35 is required to assist correct folding of C35 and to stabilize its conformation, suggesting that the prepeptide functions as an intramolecular chaperone. Recombinant proteins, which have prepeptide covalently bonded to C35, were processed by GSP as well as the in vivo prepeptide–C35 complex, and the full length of the N‐terminal presequence was needed to fulfil its role. Although the C‐terminal prosequence is present as an independent domain which is not involved in the activation process of the enzyme, it appears that the N‐terminal prosequence contributes to the regulation of enzyme activity as an inhibitor of the enzyme.

Interaction of sodium dodecyl sulfate and of non-ionic detergents with S-carboxyamidomethyl-κ-casein

Sodium dodecyl sulfate binds to S-carboxyamidomethyl-k-casein in a highly cooperative manner at a concentration near the critical micelle concentration, showing a strong dependence on ionic strength. The maximum number of sodium dodecyl sulfate molecules bound is attained above the critical micelle concentration, and is very close to the micelle aggregation number in the absence of protein. The binding sites on the protein for sodium dodecyl sulfate are localized mainly on para-k-casein part, which is a hydrophobic fragment of k-casein produced by rennin attack. The mode of the action of sodium dodecyl sulfate on S-carboxyamidomethyl-k-casein resembles that of several integral membrane proteins, rather than of water soluble proteins. On considering possible situations, it is suggested that the unusual interaction of S-carboxyamidomethyl-k-casein with sodium dodecyl sulfate is responsible for an anomalous migration of reduced k-casein observed in sodium dodecyl sulfate polyacrylamide gel electrophoresis. Further, the suggestion was made by the binding studies of sodium dodecyl sulfate and non-ionic detergents that the sites which were involved in self-association of S-carboxyamidomethyl-k-casein participated in the binding sites of detergents.

Interaction of glyceraldehyde-3-phosphate dehydrogenase with the cytoplasmic pole of band 3 from bovine erythrocyte membrane: The mode of association and identification of the binding site of band 3 polypeptide

Four fragments derived from the cytoplasmic pole of bovine band 3 were isolated, and their ability to bind glyceraldehyde-3-phosphate dehydrogenase from bovine erythrocyte and their amino-terminal primary structure were examined. It was suggested that the 50-kDa fragment, an entire cytoplasmic pole of band 3, contained the blocked amino-terminal end of band 3. Three other fragments, 45-, 39-, and 38-kDa fragments, were produced by cleavage at distances of molecular weight 5000, 11,000, and 12,000 respectively, from the amino-terminus of the 50-kDa fragment. Among these, the 50- and 45-kDa fragments complexed with the enzyme to inhibit its catalytic activity under conditions of low ionic strength, in a fashion similar to that in humans. Affinity for the enzyme was not significantly affected by disruption of the higher order structure of the fragments. The enzyme was found to be inactivated by association with synthetic polyanions, accompanied by conformational alteration. This supports participation of electrostatic interactions as the holding force between the enzyme and band 3, as suggested by I-H. Tsai et al. [1982) J. Biol. Chem. 257, 1438-1442). The 45-kDa fragment was just as potent an inhibitor of the enzyme as the parent fragment, and its amino-terminal region displayed a polyanionic character. These results allow us to map the enzyme binding site of bovine band 3 to a distance of molecular weight approximately 5000 from the amino-terminal end of band 3. Furthermore, comparison of sequence data from different species showed that the species-specific region of band 3 polypeptide centers around the amino-terminal portion.

A study on the separation of reconstituted proteoliposomes and unincorporated membrane proteins by use of hydrophobic affinity gels, with special reference to band 3 from bovine erythrocyte membranes.

Alkyl-Sepharose 4B with octyl, decyl, or dodecyl groups as an alkyl chain was a good adsorbent for any type of detergents and a variety of proteins, but not for phospholipids in a vesicle form. When these gels were added to the mixtures of reconstituted proteoliposomes prepared by using bovine band 3 and the protein unincorporated into liposomes, free band 3 in solution was adsorbed onto the gels and the proteoliposomes could be recovered by filtration, suggesting that this procedure, when applicable, permits a rapid isolation of proteoliposomes without loss and dilution of the sample. In addition, the results indicated that Bio-Beads SM-2 resin, which is virtually nonadsorbing for most proteins, can be used in removing any kind of detergents from those protein-detergent mixtures.

Competing Effect of Polyols on the Thermal Stability and Gelation of Soy Protein

The thermal denaturation temperature of a soy protein isolate was increased, but its gel-melting temperature was decreased by the addition of polyols with increasing concentration and number of hydroxyl groups of the polyols. This inverse stabilizing effect of polyols on the protein structure and gel is discussed in terms of the competing solvent effects on intra- and intermolecular hydrophobic interactions and on the peptide-peptide hydrogen bonds of the protein.