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Featured researches published by Shuji Takeda.


Japanese Journal of Applied Physics | 2003

Novel Light-Illumination Scanning Tunneling Microscopy Equipped with Optical Fiber Probe

Ken Nakajima; Bumhwan Lee; Shuji Takeda; Jaegeun Noh; Teruyuki Nagamune; Masahiko Hara

Single molecular photocurrent generation was investigated using a novel light-illumination scanning tunneling microscope (LI-STM) equipped with an optical fiber probe. For this study, self-assembled monolayers (SAMs) of chimera proteins composed of cytochrome b562 mutant proteins fused with an enhanced green fluorescent protein (EGFP) were prepared. With light illumination, the EGFP was excited, resulting in photocurrent generation due to the energy transfer to the cytochrome part instead of a typical fluorescence. Two different types of measurements were carried out: one employed a conventional LI-STM with a metallic probe and far-field optics, while the metallic probe was replaced with a laboratory-built doubly metal-coated optical fiber probe in another setup, where a local near-field illumination was possible. The comparison of these techniques indicated the superior sensitivity of the new technique to the conventional one, showing the evidence of the intramolecular energy transfer at a single molecular level.


Biotechnology Letters | 2004

Rational design of a protein-based molecular device consisting of blue fluorescent protein and zinc protoporphyrin IX incorporated into a cytochrome b562 scaffold

Shuji Takeda; Noriho Kamiya; Teruyuki Nagamune

To make a single molecular photo-device, it is essential to control the exact orientation of two types of proteins. We made a chimeric protein in which cytochrome b562 was linked to the N-terminus of enhanced green fluorescent protein, cytb562-EGFP. Within cytb562-EGFP, the excitation energy of EGFP was transferred to the cytochrome b562 cofactor fixed proximally to EGFP. Cytb562-EGFP was engineered so that iron protoporphyrin IX was substituted by zinc protoporphyrin IX to make it a suitable cofactor for photo-induced electron transfer. The photosensitizer pigment was optimized and the EGFP was replaced by a blue fluorescent mutant that gave 15% higher energy transfer efficiency.


Bioorganic & Medicinal Chemistry Letters | 2004

Site-specific conjugation of oligonucleotides to the C-terminus of recombinant protein by expressed protein ligation.

Shuji Takeda; Shinya Tsukiji; Teruyuki Nagamune


Bioconjugate Chemistry | 2003

S-Peptide as a Potent Peptidyl Linker for Protein Cross-Linking by Microbial Transglutaminase from Streptomyces mobaraensis

Noriho Kamiya; Tsutomu Tanaka; Tsutomu Suzuki; Takeshi Takazawa; Shuji Takeda; Kimitsuna Watanabe; Teruyuki Nagamune


Organic and Biomolecular Chemistry | 2008

Covalent split protein fragment–DNA hybrids generated through N-terminus-specific modification of proteins by oligonucleotides

Shuji Takeda; Shinya Tsukiji; Hiroshi Ueda; Teruyuki Nagamune


Biosensors and Bioelectronics | 2004

Rectified photocurrent in a protein based molecular photo-diode consisting of a cytochrome b562-green fluorescent protein chimera self-assembled monolayer.

Bumhwan Lee; Shuji Takeda; Ken Nakajima; Jaegeun Noh; Jeong-Woo Choi; Masahiko Hara; Teruyuki Nagamune


Biochemical and Biophysical Research Communications | 2001

Design of an Artificial Light-Harvesting Unit by Protein Engineering: Cytochrome b562–Green Fluorescent Protein Chimera

Shuji Takeda; Noriho Kamiya; Ryoichi Arai; Teruyuki Nagamune


Analytical Biochemistry | 2003

A novel protein-based heme sensor consisting of green fluorescent protein and apocytochrome b562

Shuji Takeda; Noriho Kamiya; Teruyuki Nagamune


Tetrahedron Letters | 2005

A cysteine-appended deoxyuridine for the postsynthetic DNA modification using native chemical ligation

Shuji Takeda; Shinya Tsukiji; Teruyuki Nagamune


日本生物工学会大会講演要旨集 | 2004

2A09-1 Site-specific conjugation of DNA to proteins by expressed protein ligation

Shuji Takeda; Shinya Tsukiji; Teruyuki Nagamune

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Ken Nakajima

Tokyo Institute of Technology

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Hiroshi Ueda

Tokyo Institute of Technology

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