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Dive into the research topics where Sila Genc is active.

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Featured researches published by Sila Genc.


NeuroImage | 2017

Neurite density index is sensitive to age related differences in the developing brain

Sila Genc; Charles B. Malpas; Scott K. Holland; Richard Beare; Timothy J. Silk

Purpose White matter development during childhood and adolescence is characterised by increasing white matter coherence and organisation. Commonly used scalar metrics, such as fractional anisotropy (FA), are sensitive to multiple mechanisms of white matter change and therefore unable to distinguish between mechanisms that change during development. We investigate the relationship between age and neurite density index (NDI) from neurite orientation dispersion and density imaging (NODDI), and the age‐classification accuracy of NDI compared with FA, in a developmental cohort. Method Diffusion‐weighted imaging data from 72 children and adolescents between the ages of 4–19 was collected (M=10.42, SD=3.99, 36 male). We compared NODDI metrics against conventional DTI metrics (fractional anisotropy [FA], mean diffusivity [MD], axial diffusivity [AD] and radial diffusivity [RD]) in terms of their relationship to age. An ROC analysis was also performed to assess the ability of each metric to classify older and younger participants. Results NDI exhibited a stronger relationship with age (median R2=.60) compared with MD (median R2=.39), FA (median R2=.27), AD (median R2=.14), and RD (median R2=.35) in a high proportion of white matter tracts. When participants were divided into an older and younger group, NDI achieved the best classification (median area under the curve [AUC]=.89), followed by MD (median AUC=.81), FA (median AUC=.80), RD (median AUC=.81), and AD (median AUC=.64). Conclusion Our results demonstrate the sensitivity of NDI to age‐related differences in white matter microstructural organisation over development. Importantly, NDI is more sensitive to such developmental changes compared to commonly used DTI metrics. This knowledge provides justification for implementing NODDI metrics in developmental studies. HighlightsWe show evidence supporting the use of NODDI instead of FA in the developing brain.We provide a direct comparison between Neurite density index (NDI) and DTI metrics.NDI is better at classifying subject age group than FA.NDI explains more variance in white matter with age than FA.Over development NDI is more sensitive to age related white matter differences.


Journal of Clinical Neuroscience | 2016

MRI correlates of general intelligence in neurotypical adults

Charles B. Malpas; Sila Genc; Michael M. Saling; Dennis Velakoulis; Patricia Desmond; Terence J. O’Brien

There is growing interest in the neurobiological substrate of general intelligence. Psychometric estimates of general intelligence are reduced in a range of neurological disorders, leading to practical application as sensitive, but non-specific, markers of cerebral disorder. This study examined estimates of general intelligence in neurotypical adults using diffusion tensor imaging and resting-state functional connectivity analysis. General intelligence was related to white matter organisation across multiple brain regions, confirming previous work in older healthy adults. We also found that variation in general intelligence was related to a large functional sub-network involving all cortical lobes of the brain. These findings confirm that individual variance in general intelligence is related to diffusely represented brain networks.


Journal of Alzheimer's Disease | 2016

A Phase IIa Randomized Control Trial of VEL015 (Sodium Selenate) in Mild- Moderate Alzheimer's Disease

Charles B. Malpas; Lucy Vivash; Sila Genc; Michael M. Saling; Patricia Desmond; Christopher Steward; Rodney J. Hicks; Jason Callahan; Amy Brodtmann; Steven J. Collins; Stephen Macfarlane; Niall M. Corcoran; Christopher M. Hovens; Dennis Velakoulis; Terence J. O’Brien

BACKGROUND There is increasing interest in targeting hyperphosphorylated tau (h-tau) as a disease modifying approach for Alzheimers disease (AD). Sodium selenate directly stimulates the activity of PP2A, the main enzyme responsible for h-tau dephosphorylation in the brain. OBJECTIVE This study assessed the safety and tolerability of 24-week treatment with VEL015 (sodium selenate) in AD. Investigating the effects of VEL015 on cognitive, CSF, and neuroimaging biomarkers of AD were secondary, exploratory objectives. Data were used to identify biomarkers showing most promise for use in subsequent efficacy trials. METHODS A 24-week, multicenter, Phase IIa, double-blinded randomized controlled trial. Forty patients aged ≥55 y with mild-moderate AD (MMSE 14-26) were randomized to supranutritional (VEL015 10 mg tds [n = 20]) and control (VEL015 320μg tds [n = 10] or placebo [n = 10]) groups. Patients were regularly monitored for safety, adverse events (AEs), and protocol compliance. Exploratory biomarkers included cognitive tests, neuroimaging (diffusion MR), and CSF (p-tau, t-tau, and Aβ1-42). RESULTS Thirty-six (90%; [supranutritional n = 18, control/placebo n = 18]) patients completed the trial. There were no differences in the incidence of specific AEs between groups. Only one secondary biomarker, diffusion MR measures, showed group differences, with less deterioration in the supranutritional group (p < 0.05). CONCLUSION Treatment with VEL015 at doses up to 30 mg per day for 24 weeks was safe and well-tolerated in patients with AD. Diffusion MR measures appear to be the most sensitive biomarkers to assess disease progression over 24 weeks.


NeuroImage | 2017

White matter alterations at pubertal onset

Sila Genc; Marc L. Seal; Thijs Dhollander; Charles B. Malpas; Philip Hazell; Timothy J. Silk

&NA; Recent neurodevelopmental research supports the contribution of pubertal stage to local and global grey and white matter remodelling. Little is known, however, about white matter microstructural alterations at pubertal onset. This study investigated differences in white matter properties between pre‐pubertal and pubertal children using whole brain fixel‐based analysis (FBA) of the microscopic density and macroscopic cross‐section of fibre bundles. Diffusion‐weighted imaging data were acquired for 74 typically developing children (M=10.4, SD=.43 years, 31 female) at 3.0 T (60 diffusion gradient directions, b‐value=2800 s/mm2). Group comparisons of fibre density (FD) and fibre cross‐section (FC) were made between age‐matched pre‐pubertal and pubertal groups, and post‐hoc analyses were performed on regions of interest (ROIs) defined in the splenium, body and genu of the corpus callosum. Significant fixel‐wise differences in FD were observed between the pubertal groups, where the pubertal group had significantly higher FD compared with age‐matched pre‐pubertal children, localised to the posterior corpus callosum. Post‐hoc analyses on mean FD in the corpus callosum ROIs revealed group differences between the pubertal groups in the splenium, but not body or genu. The observed higher apparent fibre density in the splenium suggests that pubertal onset coincides with white matter differences explained by increasing axon diameter. This may be an important effect to account for over pubertal development, particularly for group studies where age‐matched clinical and typical populations may be at various stages of puberty. HighlightsWe show fibre‐specific alterations to the splenium at pubertal onset.Pubertal onset is associated with greater apparent fibre density (FD) in splenium.Pubertal children have higher FD compared with pre‐pubertal children.This is likely driven by increasing axon diameter with pubertal development.


Journal of Neurotrauma | 2017

Recovery of White Matter following Pediatric Traumatic Brain Injury Depends on Injury Severity

Sila Genc; Vicki Anderson; Nicholas P. Ryan; Charles B. Malpas; Cathy Catroppa; Miriam H. Beauchamp; Timothy J. Silk

Previous studies in pediatric traumatic brain injury (TBI) have been variable in describing the effects of injury severity on white-matter development. The present study used diffusion tensor imaging to investigate prospective sub-acute and longitudinal relationships between early clinical indicators of injury severity, diffusion metrics, and neuropsychological outcomes. Pediatric patients with TBI underwent magnetic resonance imaging (MRI) (n = 78, mean [M] = 10.56, standard deviation [SD] = 2.21 years) at the sub-acute stage after injury (M = 5.55, SD = 3.05 weeks), and typically developing children were also included and imaged (n = 30, M = 10.60, SD = 2.88 years). A sub-set of the patients with TBI (n = 15) was followed up with MRI 2 years post-injury. Diffusion MRI images were acquired at sub-acute and 2-year follow-up time points and analyzed using Tract-Based Spatial Statistics. At the sub-acute stage, mean diffusivity and axial diffusivity were significantly higher in the TBI group compared with matched controls (p < 0.05). TBI severity significantly predicted diffusion profiles at the sub-acute and 2-year post-injury MRI. Patients with more severe TBI also exhibited poorer information processing speed at 6-months post-injury, which in turn correlated with their diffusion metrics. These findings highlight that the severity of the injury not only has an impact on white-matter microstructure, it also impacts its recovery over time. Moreover, findings suggest that sub-acute microstructural changes may represent a useful prognostic marker to identify children at elevated risk for longer term deficits.


Journal of Magnetic Resonance Imaging | 2016

Short-term white matter alterations in Alzheimer's disease characterized by diffusion tensor imaging

Sila Genc; Christopher Steward; Charles B. Malpas; Dennis Velakoulis; Terence J. O'Brien; Patricia Desmond

To investigate whether there are any white matter changes in a 6‐month follow‐up of mild‐moderate Alzheimers patients using diffusion tensor imaging (DTI).


Psychological Medicine | 2017

White matter microstructure predicts longitudinal social cognitive outcomes after paediatric traumatic brain injury: a diffusion tensor imaging study

Nicholas P. Ryan; Sila Genc; Miriam H. Beauchamp; Keith Owen Yeates; Stephen Hearps; Cathy Catroppa; Vicki Anderson; Timothy J. Silk

BACKGROUND Deficits in social cognition may be among the most profound and disabling sequelae of paediatric traumatic brain injury (TBI); however, the neuroanatomical correlates of longitudinal outcomes in this domain remain unexplored. This study aimed to characterize social cognitive outcomes longitudinally after paediatric TBI, and to evaluate the use of sub-acute diffusion tensor imaging (DTI) to predict these outcomes. METHODS The sample included 52 children with mild complex-severe TBI who were assessed on cognitive theory of mind (ToM), pragmatic language and affective ToM at 6- and 24-months post-injury. For comparison, 43 typically developing controls (TDCs) of similar age and sex were recruited. DTI data were acquired sub-acutely (mean = 5.5 weeks post-injury) in a subset of 65 children (TBI = 35; TDC = 30) to evaluate longitudinal prospective relationships between white matter microstructure assessed using Tract-Based Spatial Statistics and social cognitive outcomes. RESULTS Whole brain voxel-wise analysis revealed significantly higher mean diffusivity (MD), axial diffusivity (AD) and radial diffusivity (RD) in the sub-acute TBI group compared with TDC, with differences observed predominantly in the splenium of the corpus callosum (sCC), sagittal stratum (SS), dorsal cingulum (DC), uncinate fasciculus (UF) and middle and superior cerebellar peduncles (MCP & SCP, respectively). Relative to TDCs, children with TBI showed poorer cognitive ToM, affective ToM and pragmatic language at 6-months post-insult, and those deficits were related to abnormal diffusivity of the sCC, SS, DC, UF, MCP and SCP. Moreover, children with TBI showed poorer affective ToM and pragmatic language at 24-months post-injury, and those outcomes were predicted by sub-acute alterations in diffusivity of the DC and MCP. CONCLUSIONS Abnormal microstructure within frontal-temporal, limbic and cerebro-cerebellar white matter may be a risk factor for long-term social difficulties observed in children with TBI. DTI may have potential to unlock early prognostic markers of long-term social outcomes.


NeuroImage | 2018

Development of white matter fibre density and morphology over childhood: A longitudinal fixel-based analysis

Sila Genc; Robert E. Smith; Charles B. Malpas; Vicki Anderson; Jan M. Nicholson; Daryl Efron; Emma Sciberras; Marc L. Seal; Timothy J. Silk

Purpose: White matter fibre development in childhood involves dynamic changes to microstructural organisation driven by increasing axon diameter, density, and myelination. However, there is a lack of longitudinal studies that have quantified advanced diffusion metrics to identify regions of accelerated fibre maturation, particularly across the early pubertal period. We applied a novel longitudinal fixel‐based analysis (FBA) framework, in order to estimate microscopic and macroscopic white matter changes over time. Methods: Diffusion‐weighted imaging (DWI) data were acquired for 59 typically developing children (27 female) aged 9–13 years at two time‐points approximately 16 months apart (time‐point 1: 10.4 ± 0.4 years, time‐point 2: 11.7 ± 0.5 years). Whole brain FBA was performed using the connectivity‐based fixel enhancement method, to assess longitudinal changes in fibre microscopic density and macroscopic morphological measures, and how these changes are related to sex, pubertal stage, and pubertal progression. Follow‐up analyses were performed in sub‐regions of the corpus callosum to confirm the main findings using a Bayesian repeated measures approach. Results: There was a statistically significant increase in fibre density over time localised to medial and posterior commissural and association fibres, including the forceps major and bilateral superior longitudinal fasciculus. Increases in fibre cross‐section were substantially more widespread. The rate of fibre development was not associated with age or sex. In addition, there was no significant relationship between pubertal stage or progression and longitudinal fibre development over time. Follow‐up Bayesian analyses were performed to confirm the findings, which supported the null effect of the longitudinal pubertal comparison. Conclusion: Using a novel longitudinal fixel‐based analysis framework, we demonstrate that white matter fibre density and fibre cross‐section increased within a 16‐month scan rescan period in specific regions. The observed increases might reflect increasing axonal diameter or axon count. Pubertal stage or progression did not influence the rate of fibre development in the early stages of puberty. Future work should focus on quantifying these measures across a wider age range to capture the full spectrum of fibre development across the pubertal period.


American Journal of Psychiatry | 2018

Multimodal Structural Neuroimaging Markers of Brain Development and ADHD Symptoms

Gareth Ball; Charles B. Malpas; Sila Genc; Daryl Efron; Emma Sciberras; Vicki Anderson; Jan M. Nicholson; Timothy J. Silk

OBJECTIVE: Attention deficit hyperactivity disorder (ADHD) is a multifactorial disorder with diverse associated risk factors and comorbidities. In this study, the authors sought to understand ADHD from a dimensional perspective and to identify neuroanatomical correlates of traits and behaviors that span diagnostic criteria. METHODS: Multimodal neuroimaging data and multi-informant cognitive and clinical data were collected in a densely phenotyped pediatric cohort (N=160; 70 with ADHD; age range, 9-12 years). Multivariate analysis identified associations between clinical and cognitive factors and multimodal neuroimaging markers (across tissue volume, cortical thickness, cortical area, and white matter microstructure). The resulting imaging markers were validated in an independent cohort (N=231; 132 with ADHD; age range, 7-18 years). RESULTS: Four novel patterns of neuroanatomical variation that related to phenotypic variation were identified. The first imaging pattern captured association of head size with sex, socioeconomic status, and mathematics and reading performance. The second pattern captured variation associated with development and showed that individuals with delayed development were more likely to be receiving ADHD medication. The third pattern was associated with hyperactivity, greater comorbidities, poorer cognition, lower parental education, and lower quality of life. The fourth pattern was associated with a particular profile of poorer cognition and irritability independent of ADHD. The authors further demonstrated that these imaging patterns could predict variation in age and ADHD symptoms in an independent cohort. CONCLUSIONS: The findings suggest that ADHD presentation may arise from a summation of several clinical, developmental, or cognitive factors, each with a distinct neuroanatomical foundation. This informs the neurobiological foundations of ADHD and highlights the value of detailed phenotypic data in understanding the neurobiology underlying neurodevelopmental disorders.


BMC Psychiatry | 2016

Developmental brain trajectories in children with ADHD and controls: a longitudinal neuroimaging study

Timothy J. Silk; Sila Genc; Vicki Anderson; Daryl Efron; Philip Hazell; Jan M. Nicholson; Michael Kean; Charles B. Malpas; Emma Sciberras

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Vicki Anderson

Royal Children's Hospital

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Daryl Efron

Royal Children's Hospital

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