Simon Egli

Species richness, abundance, and phenology of fungal fruit bodies over 21 years in a Swiss forest plot

Fungal fruit bodies were surveyed on a plot area of 1500 m# from 1975‐99 (excluding 1980‐83) in the fungal reserve La Chaneaz in western Switzerland. Fruit bodies were identified and counted on a weekly basis. Species richness and abundances varied strongly between years. More than 400 species were encountered. Many species were transient; particularly rich years showed species occurring for only one year. This indicates that the number of species will substantially increase if the survey is continued. Within years, the species richness, abundances and periods of fruiting were tightly correlated. The abundance data of species within a year seemed symmetrically distributed over their fruiting period. The relation between species richness and abundances within years was studied by fitting species-abundance plots, known from numerical ecology. The surface area under the curves was taken as a parameter for ecological}fungal diversity. Productivity was correlated with the precipitation from June until October. The time of fruit body appearance was correlated with the temperatures in July and August. As groups, mycorrhizal and saprotrophic species behaved similarly over the years. The productivity of species was compared with their distribution in The Netherlands indicating a correlation between the level of local abundance and the geographic range of species.

Soil and geography are more important determinants of indigenous arbuscular mycorrhizal communities than management practices in Swiss agricultural soils

Arbuscular mycorrhizal fungi (AMF) are ubiquitous soil fungi, forming mutualistic symbiosis with a majority of terrestrial plant species. They are abundant in nearly all soils, less diverse than soil prokaryotes and other intensively studied soil organisms and thus are promising candidates for universal indicators of land management legacies and soil quality degradation. However, insufficient data on how the composition of indigenous AMF varies along soil and landscape gradients have hampered the definition of baselines and effect thresholds to date. Here, indigenous AMF communities in 154 agricultural soils collected across Switzerland were profiled by quantitative real‐time PCR with taxon‐specific markers for six widespread AMF species. To identify the key determinants of AMF community composition, the profiles were related to soil properties, land management and site geography. Our results indicate a number of well‐supported dependencies between abundances of certain AMF taxa and soil properties such as pH, soil fertility and texture, and a surprising lack of effect of available soil phosphorus on the AMF community profiles. Site geography, especially the altitude and large geographical distance, strongly affected AMF communities. Unexpected was the apparent lack of a strong land management effect on the AMF communities as compared to the other predictors, which could be due to the rarity of highly intensive and unsustainable land management in Swiss agriculture. In spite of the extensive coverage of large geographical and soil gradients, we did not identify any taxon suitable as an indicator of land use among the six taxa we studied.

Soil contamination by crude oil: impact on the mycorrhizosphere and on the revegetation potential of forest trees.

In vitro and greenhouse biotests were carried out to study the effects of various concentrations of crude oil on the mycorrhizosphere and the ability of ectomycorrhizal fungi to colonise Norway spruce and poplar seedlings grown on contaminated soil. Ectomycorrhizal fungi grown in pure cultures showed a variety of reactions to crude oil, ranging from growth stimulation to total inhibition of growth, depending on the species of fungi. Germination of poplar and spruce seeds was not significantly affected. The growth of spruce seedlings was not affected by crude oil, whereas that of poplar seedlings was significantly reduced at high concentrations. None of the concentrations had any effect on the degree of ectomycorrhizal and endomycorrhizal colonisation of poplar. With spruce, however, the ectomycorrhizal fungi showed species-specific reactions to increasing concentrations, in accordance with the results of the pure culture test. The length of time between soil contamination and seeding affects both seedling growth and the mycorrhizal infection potential of the soil. The results confirm the importance of mycorrhizal fungi in the bioremediation of soils contaminated by crude oil.

Warming-induced shift in European mushroom fruiting phenology

In terrestrial ecosystems, fungi are the major agents of decomposition processes and nutrient cycling and of plant nutrient uptake. Hence, they have a vital impact on ecosystem processes and the terrestrial carbon cycle. Changes in productivity and phenology of fungal fruit bodies can give clues to changes in fungal activity, but understanding these changes in relation to a changing climate is a pending challenge among ecologists. Here we report on phenological changes in fungal fruiting in Europe over the past four decades. Analyses of 746,297 dated and geo-referenced mushroom records of 486 autumnal fruiting species from Austria, Norway, Switzerland, and the United Kingdom revealed a widening of the annual fruiting season in all countries during the period 1970–2007. The mean annual day of fruiting has become later in all countries. However, the interspecific variation in phenological responses was high. Most species moved toward a later ending of their annual fruiting period, a trend that was particularly strong in the United Kingdom, which may reflect regional variation in climate change and its effects. Fruiting of both saprotrophic and mycorrhizal fungi now continues later in the year, but mycorrhizal fungi generally have a more compressed season than saprotrophs. This difference is probably due to the fruiting of mycorrhizal fungi partly depending on cues from the host plant. Extension of the European fungal fruiting season parallels an extended vegetation season in Europe. Changes in fruiting phenology imply changes in mycelia activity, with implications for ecosystem function.

Linking climate variability to mushroom productivity and phenology

Climate change affects ecological systems across various spatiotemporal scales and disrupts the life cycles of resident organisms. Little is known about the environmental drivers of mushroom productivity and phenology, partially because the life cycle of fungi is mostly belowground. Here, we present results from a field survey, in which a total of 65 631 unique individual mycorrhizal mushrooms – representing 273 species – were recorded during weekly intervals from 1975 to 2006 in a nature reserve in Switzerland. The average annual number of observed mushrooms increased from 1313 (pre-1991) to 2730 (1991 and thereafter), while average fruiting time during the latter period was delayed by 10 days as compared with that of the former. Precipitation amounts and temperature means determined fungal activity. Reconstructed intra-annual timing of mushroom fruiting for the 20th century paralleled contemporary Swiss wine harvest dates, providing independent evidence of climate-induced ecosystem change. Enhanced grow...

Is forest mushroom productivity driven by tree growth? Results from a thinning experiment

Abstract• Most of the edible forest mushrooms are mycorrhizal and depend on carbohydrates produced by the associated trees. Fruiting patterns of these fungi are not yet fully understood since climatic factors alone do not completely explain mushroom occurrence.• The objective of this study was to retrospectively find out if changing tree growth following an increment thinning has influenced the diversity patterns and productivity of associated forest mushrooms in the fungus reserve La Chanéaz, Switzerland.• The results reveal a clear temporal relationship between the thinning, the growth reaction of trees and the reaction of the fungal community, especially for the ectomycorrhizal species. The tree-ring width of the formerly suppressed beech trees and the fruit body number increased after thinning, leading to a significantly positive correlation between fruit body numbers and tree-ring width.• Fruit body production was influenced by previous annual tree growth, the best accordance was found between fruit body production and the tree-ring width two years previously.• The results support the hypothesis that ectomycorrhizal fruit body production must be linked with the growth of the associated host trees. Moreover, the findings indicate the importance of including mycorrhizal fungi as important players when discussing a tree as a carbon source or sink.Résumé• La plupart des champignons comestibles des forêts sont mycorhiziens et dépendent des hydrates de carbone produits par les arbres associés. Le processus de fructification de ces champignons n’est pas encore totalement connu. À eux seuls, les facteurs climatiques ne sont pas en mesure d’expliquer l’apparition d’années pauvres ou riches en champignons.• Cette étude a pour but de vérifier, d’une manière rétrospective, si la modification de la croissance des arbres, induite par une mise en lumière suite à une éclaircie, influence la diversité et la productivité des champignons dans la réserve mycologique de La Chanéaz en Suisse.• Les résultats montrent une relation temporelle nette entre l’éclaircie, la réaction de croissance des arbres et la réaction des communautés de champignons, spécialement pour les espèces ectomycorhiziennes. Nous avons observé une augmentation tant de la largeur des cernes des hêtres autrefois dominés que du nombre de carpophores, conduisant à une corrélation positive entre les deux variables.• La production de carpophores était influencée par la croissance annuelle précédente des arbres. La meilleure concordance a été trouvée entre la production de carpophores et la largeur des cernes deux ans auparavant.• Les résultats sont en accord avec l’hypothèse que la production de carpophores des champignons mycorrhiziens est liée à la croissance des arbres associés. En outre, les résultats montrent qu’il est essentiel de tenir compte du rôle important des champignons mycorhiziens lorsqu’on débat de l’arbre en tant que source ou puits de carbone.

Susceptibility of ectomycorrhizal fungi to soil heating

Ectomycorrhizal (EcM) fungi are an important biotic factor for successful tree recruitment because they enhance plant growth and alleviate drought stress of their hosts. Thus, EcM propagules are expected to be a key factor for forest regeneration after major disturbance events such as stand-replacing forest fires. Yet the susceptibility of soil-borne EcM fungi to heat is unclear. In this study, we investigated the heat tolerance of EcM fungi of Scots pine (Pinus sylvestris L., Pinaceae). Soil samples of three soil depths were heated to the temperature of 45, 60 and 70 °C, respectively, and surviving EcM fungi were assessed by a bioassay using Scots pine as an experimental host plant. EcM species were identified by a combination of morphotyping and sequencing of the ITS region. We found that mean number of species per sample was reduced by the 60 and 70 °C treatment, but not by the 45 °C treatment. Species composition changed due to heat. While some EcM fungi species did not survive heating, the majority of species was also found in the heated samples. The most frequent species in the heat treatment were Rhizopogon roseolus, Cenococcum geophilum and several unidentified species.

Growth Response of Drought-Stressed Pinus sylvestris Seedlings to Single- and Multi-Species Inoculation with Ectomycorrhizal Fungi

Many trees species form symbiotic associations with ectomycorrhizal (ECM) fungi, which improve nutrient and water acquisition of their host. Until now it is unclear whether the species richness of ECM fungi is beneficial for tree seedling performance, be it during moist conditions or drought. We performed a pot experiment using Pinus sylvestris seedlings inoculated with four selected ECM fungi (Cenococcum geophilum, Paxillus involutus, Rhizopogon roseolus and Suillus granulatus) to investigate (i) whether these four ECM fungi, in monoculture or in species mixtures, affect growth of P. sylvestris seedlings, and (ii) whether this effect can be attributed to species number per se or to species identity. Two different watering regimes (moist vs. dry) were applied to examine the context-dependency of the results. Additionally, we assessed the activity of eight extracellular enzymes in the root tips. Shoot growth was enhanced in the presence of S. granulatus, but not by any other ECM fungal species. The positive effect of S. granulatus on shoot growth was more pronounced under moist (threefold increase) than under dry conditions (twofold increase), indicating that the investigated ECM fungi did not provide additional support during drought stress. The activity of secreted extracellular enzymes was higher in S. granulatus than in any other species. In conclusion, our findings suggest that ECM fungal species composition may affect seedling performance in terms of aboveground biomass.

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

The most frequently encountered symbiont on tree roots is the ascomycete Cenococcum geophilum, the only mycorrhizal species within the largest fungal class Dothideomycetes, a class known for devastating plant pathogens. Here we show that the symbiotic genomic idiosyncrasies of ectomycorrhizal basidiomycetes are also present in C. geophilum with symbiosis-induced, taxon-specific genes of unknown function and reduced numbers of plant cell wall-degrading enzymes. C. geophilum still holds a significant set of genes in categories known to be involved in pathogenesis and shows an increased genome size due to transposable elements proliferation. Transcript profiling revealed a striking upregulation of membrane transporters, including aquaporin water channels and sugar transporters, and mycorrhiza-induced small secreted proteins (MiSSPs) in ectomycorrhiza compared with free-living mycelium. The frequency with which this symbiont is found on tree roots and its possible role in water and nutrient transport in symbiosis calls for further studies on mechanisms of host and environmental adaptation.

Potential and limitations of Burgundy truffle cultivation

Burgundy truffles (Tuber aestivum syn. Tuber uncinatum) are the highly prized fruit bodies of subterranean fungi always occurring in ectomycorrhizal symbiosis with host plants. Successful cultivation can be achieved through artificial mycorrhization and outplanting of mostly oaks and hazel on suitable terrain. Here, we review ecological requirements, the influence of environmental factors, and the importance of molecular techniques for a successful cultivation of T. aestivum across Europe. The historical background and current knowledge of T. aestivum cultivation are discussed in light of its socioeconomic relevance.