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Featured researches published by Simone Schleede.


Proceedings of the National Academy of Sciences of the United States of America | 2012

Emphysema diagnosis using X-ray dark-field imaging at a laser-driven compact synchrotron light source

Simone Schleede; Felix G. Meinel; Martin Bech; Julia Herzen; Klaus Achterhold; Guillaume Potdevin; Andreas Malecki; Silvia Adam-Neumair; Sven F. Thieme; Fabian Bamberg; Konstantin Nikolaou; Alexander Bohla; Ali Oe. Yildirim; Roderick J. Loewen; Martin Gifford; Ronald D. Ruth; Oliver Eickelberg; Maximilian F. Reiser; Franz Pfeiffer

In early stages of various pulmonary diseases, such as emphysema and fibrosis, the change in X-ray attenuation is not detectable with absorption-based radiography. To monitor the morphological changes that the alveoli network undergoes in the progression of these diseases, we propose using the dark-field signal, which is related to small-angle scattering in the sample. Combined with the absorption-based image, the dark-field signal enables better discrimination between healthy and emphysematous lung tissue in a mouse model. All measurements have been performed at 36 keV using a monochromatic laser-driven miniature synchrotron X-ray source (Compact Light Source). In this paper we present grating-based dark-field images of emphysematous vs. healthy lung tissue, where the strong dependence of the dark-field signal on mean alveolar size leads to improved diagnosis of emphysema in lung radiographs.


Radiology | 2013

Pulmonary Emphysema Diagnosis with a Preclinical Small-Animal X-ray Dark-Field Scatter-Contrast Scanner

Andre Yaroshenko; Felix G. Meinel; Martin Bech; Arne Tapfer; Astrid Velroyen; Simone Schleede; Sigrid Auweter; Alexander Bohla; Ali Oe. Yildirim; Konstantin Nikolaou; Fabian Bamberg; Oliver Eickelberg; Maximilian F. Reiser; Franz Pfeiffer

PURPOSE To test the hypothesis that the joint distribution of x-ray transmission and dark-field signals obtained with a compact cone-beam preclinical scanner with a polychromatic source can be used to diagnose pulmonary emphysema in ex vivo murine lungs. MATERIALS AND METHODS The animal care committee approved this study. Three excised murine lungs with pulmonary emphysema and three excised murine control lungs were imaged ex vivo by using a grating-based micro-computed tomographic (CT) scanner. To evaluate the diagnostic value, the natural logarithm of relative transmission and the natural logarithm of dark-field scatter signal were plotted on a per-pixel basis on a scatterplot. Probability density function was fit to the joint distribution by using principle component analysis. An emphysema map was calculated based on the fitted probability density function. RESULTS The two-dimensional scatterplot showed a characteristic difference between control and emphysematous lungs. Control lungs had lower average median logarithmic transmission (-0.29 vs -0.18, P = .1) and lower average dark-field signal (-0.54 vs -0.37, P = .1) than emphysematous lungs. The angle to the vertical axis of the fitted regions also varied significantly (7.8° for control lungs vs 15.9° for emphysematous lungs). The calculated emphysema distribution map showed good agreement with histologic findings. CONCLUSION X-ray dark-field scatter images of murine lungs obtained with a preclinical scanner can be used in the diagnosis of pulmonary emphysema. SUPPLEMENTAL MATERIAL http://radiology.rsna.org/lookup/suppl/doi:10.1148/radiol.13122413/-/DC1.


Proceedings of the National Academy of Sciences of the United States of America | 2015

X-ray phase-contrast tomography with a compact laser-driven synchrotron source

Elena Eggl; Simone Schleede; Martin Bech; Klaus Achterhold; Roderick J. Loewen; Ronald D. Ruth; Franz Pfeiffer

Significance Absorption-based X-ray tomography suffers from low contrast for soft tissue. Over the last few years, it has been shown that grating-based phase-contrast X-ray tomography can overcome this limitation. Here we present, to our knowledge, the first phase-contrast tomography acquired at a compact light source, a recently developed compact synchrotron based on inverse Compton scattering. Between X-ray tubes and large-scale synchrotron sources, a large gap in performance exists with respect to the monochromaticity and brilliance of the X-ray beam. However, due to their size and cost, large-scale synchrotrons are not available for more routine applications in small and medium-sized academic or industrial laboratories. This gap could be closed by laser-driven compact synchrotron light sources (CLS), which use an infrared (IR) laser cavity in combination with a small electron storage ring. Hard X-rays are produced through the process of inverse Compton scattering upon the intersection of the electron bunch with the focused laser beam. The produced X-ray beam is intrinsically monochromatic and highly collimated. This makes a CLS well-suited for applications of more advanced––and more challenging––X-ray imaging approaches, such as X-ray multimodal tomography. Here we present, to our knowledge, the first results of a first successful demonstration experiment in which a monochromatic X-ray beam from a CLS was used for multimodal, i.e., phase-, dark-field, and attenuation-contrast, X-ray tomography. We show results from a fluid phantom with different liquids and a biomedical application example in the form of a multimodal CT scan of a small animal (mouse, ex vivo). The results highlight particularly that quantitative multimodal CT has become feasible with laser-driven CLS, and that the results outperform more conventional approaches.


Zeitschrift Fur Medizinische Physik | 2013

An algebraic iterative reconstruction technique for differential X-ray phase-contrast computed tomography

Jian Fu; Simone Schleede; Renbo Tan; Liyuan Chen; Martin Bech; Klaus Achterhold; Martin Gifford; Rod Loewen; Ronald D. Ruth; Franz Pfeiffer

Iterative reconstruction has a wide spectrum of proven advantages in the field of conventional X-ray absorption-based computed tomography (CT). In this paper, we report on an algebraic iterative reconstruction technique for grating-based differential phase-contrast CT (DPC-CT). Due to the differential nature of DPC-CT projections, a differential operator and a smoothing operator are added to the iterative reconstruction, compared to the one commonly used for absorption-based CT data. This work comprises a numerical study of the algorithm and its experimental verification using a dataset measured at a two-grating interferometer setup. Since the algorithm is easy to implement and allows for the extension to various regularization possibilities, we expect a significant impact of the method for improving future medical and industrial DPC-CT applications.


PLOS ONE | 2013

Diagnosing and mapping pulmonary emphysema on X-ray projection images: incremental value of grating-based X-ray dark-field imaging.

Felix G. Meinel; Felix Schwab; Simone Schleede; Martin Bech; Julia Herzen; Klaus Achterhold; Sigrid Auweter; Fabian Bamberg; Ali Oe. Yildirim; Alexander Bohla; Oliver Eickelberg; Rod Loewen; Martin Gifford; Ronald D. Ruth; Maximilian F. Reiser; Franz Pfeiffer; Konstantin Nikolaou

Purpose To assess whether grating-based X-ray dark-field imaging can increase the sensitivity of X-ray projection images in the diagnosis of pulmonary emphysema and allow for a more accurate assessment of emphysema distribution. Materials and Methods Lungs from three mice with pulmonary emphysema and three healthy mice were imaged ex vivo using a laser-driven compact synchrotron X-ray source. Median signal intensities of transmission (T), dark-field (V) and a combined parameter (normalized scatter) were compared between emphysema and control group. To determine the diagnostic value of each parameter in differentiating between healthy and emphysematous lung tissue, a receiver-operating-characteristic (ROC) curve analysis was performed both on a per-pixel and a per-individual basis. Parametric maps of emphysema distribution were generated using transmission, dark-field and normalized scatter signal and correlated with histopathology. Results Transmission values relative to water were higher for emphysematous lungs than for control lungs (1.11 vs. 1.06, p<0.001). There was no difference in median dark-field signal intensities between both groups (0.66 vs. 0.66). Median normalized scatter was significantly lower in the emphysematous lungs compared to controls (4.9 vs. 10.8, p<0.001), and was the best parameter for differentiation of healthy vs. emphysematous lung tissue. In a per-pixel analysis, the area under the ROC curve (AUC) for the normalized scatter value was significantly higher than for transmission (0.86 vs. 0.78, p<0.001) and dark-field value (0.86 vs. 0.52, p<0.001) alone. Normalized scatter showed very high sensitivity for a wide range of specificity values (94% sensitivity at 75% specificity). Using the normalized scatter signal to display the regional distribution of emphysema provides color-coded parametric maps, which show the best correlation with histopathology. Conclusion In a murine model, the complementary information provided by X-ray transmission and dark-field images adds incremental diagnostic value in detecting pulmonary emphysema and visualizing its regional distribution as compared to conventional X-ray projections.


Journal of Synchrotron Radiation | 2012

Multimodal hard X-ray imaging of a mammography phantom at a compact synchrotron light source

Simone Schleede; Martin Bech; Klaus Achterhold; Guillaume Potdevin; Martin Gifford; Rod Loewen; Cecile Limborg; Ronald D. Ruth; Franz Pfeiffer

The Compact Light Source is a miniature synchrotron producing X-rays at the interaction point of a counter-propagating laser pulse and electron bunch through the process of inverse Compton scattering. The small transverse size of the luminous region yields a highly coherent beam with an angular divergence of a few milliradians. The intrinsic monochromaticity and coherence of the produced X-rays can be exploited in high-sensitivity differential phase-contrast imaging with a grating-based interferometer. Here, the first multimodal X-ray imaging experiments at the Compact Light Source at a clinically compatible X-ray energy of 21 keV are reported. Dose-compatible measurements of a mammography phantom clearly demonstrate an increase in contrast attainable through differential phase and dark-field imaging over conventional attenuation-based projections.


Photonics and Lasers in Medicine | 2012

Experimental validation of image contrast correlation between ultra-small-angle X-ray scattering and grating-based dark-field imaging using a laser-driven compact X-ray source

Martin Bech; Simone Schleede; Guillaume Potdevin; Klaus Achterhold; Oliver Bunk; Torben Heick Jensen; Rod Loewen; Ron Ruth; Franz Pfeiffer

Abstract X-ray phase and dark-field contrast have recently been the source of much attention in the field of X-ray imaging, as they both contribute new imaging signals based on physical principles that differ from conventional X-ray imaging. With a so-called Talbot grating interferometer, both phase-contrast and dark-field images are obtained simultaneously with the conventional attenuation-based X-ray image, providing three complementary image modalities that are intrinsically registered. Whereas the physical contrast mechanisms behind attenuation and phase contrast are well understood, a formalism to describe the dark-field signal is still in progress. In this article, we report on correlative experimental results obtained with a grating interferometer and with small-angle X-ray scattering. Furthermore, we use a proposed model to quantitatively describe the results, which could be of great importance for future clinical and biomedical applications of grating-based X-ray imaging. Zusammenfassung Die Röntgen-Bildkontrastierung mittels Phasen- und Dunkelfeld-Kontrast hat in der jüngsten Zeit besonderes Interesse erfahren, da diese Verfahren intrinsisch unterschiedliche physikalische Wechselwirkungen als Bildsignale benutzen. Mittels eines sogenannten Talbot-Interferometers werden Phasen- und Dunkelfeld-Kontrastaufnahmen gleichzeitig zusammen mit der konventionellen, abschwächungsbasierten Röntgenaufnahme erzeugt, was multimodale Röntgenbilder erlaubt, die intrinsisch registriert sind. Während die physikalischen Prozesse, die den konventionellen Röntgenaufnahmen und den Röntgen-Phasenkontrastaufnahmen zugrunde liegen gut verstanden sind, ist ein entsprechender Formalismus für die Dunkelfeldbildgebung noch in der Erforschung. In dieser Arbeit präsentieren wir experimentelle Ergebnisse, die den Zusammenhang zwischen Röntgen-Kleinwinkelstreuung und gitter-basierter Röntgen-Dunkelfeldbildgebung unter Verwendung eines laser-getriebenen Kompaktsynchrotrons unterstreichen und die für spätere klinische und biomedizinische Anwendungen von Bedeutung sein können.


European Journal of Radiology | 2014

X-ray phase-contrast tomosynthesis for improved breast tissue discrimination

Simone Schleede; Martin Bech; Susanne Grandl; Aniko Sztrókay; Julia Herzen; Doris Mayr; Marco Stockmar; Guillaume Potdevin; Irene Zanette; Alexander Rack; Timm Weitkamp; Franz Pfeiffer

PURPOSE Attenuation-based tomosynthesis has proven to successfully resolve the glandular tissue overlap present in mammography. However, the ability of tomosynthesis to differentiate tumorous and glandular tissue remains limited, due to the small differences in X-ray attenuation in breast tissue. One possibility to overcome this limitation and to further increase the diagnostic value of tomosynthesis exams, is the application of recently developed grating-based phase-contrast methods, which provide complementary information on the phase shift and the local scattering power of the sample. In this study, we report on first phase-contrast breast tomosynthesis results of a mastectomy sample slice with an invasive ductal carcinoma. MATERIAL AND METHODS A slice of a mastectomy sample with histologically proven invasive ductal cancer was imaged at the synchrotron radiation source ESRF (Grenoble, France). We used a two-grating interferometer setup at the ninth fractional Talbot distance and with an X-ray energy of 23 keV. In grating interferometry absorption, differential phase, and scattering images are recorded simultaneously. The tomosynthesis scan comprises 61 projections. Multimodal tomosynthesis results were reconstructed using a standard filtered back-projection approach. Our findings are supported by a comparison of tomographic views to histopathology. RESULTS Phase-contrast tomosynthesis combines the advantage of improved soft-tissue discrimination in phase-contrast imaging with the ability of tomosynthesis to provide a third dimension so that improved feature visibility is not hampered by superposition artifacts. Our results indicate superior diagnostic value due to the depth resolution supplied in tomosynthesis imaging; a region of necrotic tissue that is obscured in a projection image can clearly be depicted in one single tomosynthesis slice. Compared to absorption tomosynthesis alone, soft tissue contrast is significantly enhanced in phase-contrast tomosynthesis views, where fibrous structures are clearly visible. CONCLUSION In this article we present the first proof-of-principle grating-based phase-contrast tomosynthesis of a mastectomy sample section. A comparison of conventional attenuation with phase-contrast and dark-field tomosynthesis indicates that complementary information from three signals yields an increase in diagnostic value, which is verified in a comparison of our results to histological sections of the sample. As grating-based phase-contrast mammography efficiently works with conventional lab sources, our benchmark results indicate the potential benefit of translating phase-contrast tomosynthesis into a clinical setting.


Biomedical Optics Express | 2012

Numerical comparison of x-ray differential phase contrast and attenuation contrast

Dieter Hahn; Pierre Thibault; Martin Bech; Marco Stockmar; Simone Schleede; Irene Zanette; Alexander Rack; Timm Weitkamp; Aniko Sztrókay; Thomas Schlossbauer; Fabian Bamberg; Maximilian F. Reiser; Franz Pfeiffer

We present a numerical tool to compare directly the contrast-to-noise-ratio (CNR) of the attenuation- and differential phase-contrast signals available from grating-based X-ray imaging for single radiographs. The attenuation projection is differentiated to bring it into a modality comparable to the differential phase projection using a Gaussian derivative filter. A Relative Contrast Gain (RCG) is then defined as the ratio of the CNR of image values in a region of interest (ROI) in the differential phase projection to the CNR of image values in the same ROI in the differential attenuation projection. We apply the method on experimental data of human breast tissue acquired using a grating interferometer to compare the two contrast modes for two regions of interest differing in the type of tissue. Our results indicate that the proposed method can be used as a local estimate of the spatial distribution of the ratio δ/β, i.e., real and imaginary part of the complex refractive index, across a sample.


EPL | 2016

X-ray phase-contrast tomosynthesis of a human ex vivo breast slice with an inverse Compton x-ray source

Elena Eggl; Simone Schleede; Martin Bech; Klaus Achterhold; Susanne Grandl; Aniko Sztrókay; K. Hellerhoff; Doris Mayr; R. Loewen; Ronald D. Ruth; Maximilian F. Reiser; Franz Pfeiffer

While the performance of conventional x-ray tube sources often suffers from the broad polychromatic spectrum, synchrotrons that could provide highly brilliant x-rays are restricted to large research facilities and impose high investment and maintenance costs. Lately, a new type of compact synchrotron sources has been investigated. These compact light sources (CLS) based on inverse Compton scattering provide quasi-monochromatic hard x-rays. The flux and brilliance yielded by a CLS currently lie between x-ray tube sources and third-generation synchrotrons. The relatively large partially coherent x-ray beam is well suited for the investigation of preclinical applications of grating-based phase-contrast and dark-field imaging. Here we present the first grating-based multimodal tomosynthesis images of a human breast slice acquired at a CLS to investigate the possibilities of improved breast cancer diagnostics.

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Martin Bech

University of Copenhagen

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Ronald D. Ruth

SLAC National Accelerator Laboratory

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Oliver Eickelberg

University of Colorado Denver

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