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Dive into the research topics where Soh Yamamoto is active.

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Featured researches published by Soh Yamamoto.


Nature Communications | 2014

Structural characterization of the substrate transfer mechanism in Hsp70/Hsp90 folding machinery mediated by Hop

Sara Alvira; Jorge Cuéllar; Alina Röhl; Soh Yamamoto; Hideaki Itoh; Carlos Alfonso; Germán Rivas; Johannes Buchner; José M. Valpuesta

In eukarya, chaperones Hsp70 and Hsp90 act coordinately in the folding and maturation of a range of key proteins with the help of several co-chaperones, especially Hop. Although biochemical data define the Hop-mediated Hsp70-Hsp90 substrate transfer mechanism, the intrinsic flexibility of these proteins and the dynamic nature of their complexes have limited the structural studies of this mechanism. Here we generate several complexes in the Hsp70/Hsp90 folding pathway (Hsp90:Hop, Hsp90:Hop:Hsp70 and Hsp90:Hop:Hsp70 with a fragment of the client protein glucocorticoid receptor (GR-LBD)), and determine their 3D structure using electron microscopy techniques. Our results show that one Hop molecule binds to one side of the Hsp90 dimer in both extended and compact conformations, through Hop domain rearrangement that take place when Hsp70 or Hsp70:GR-LBD bind to Hsp90:Hop. The compact conformation of the Hsp90:Hop:Hsp70:GR-LBD complex shows that GR-LBD binds to the side of the Hsp90 dimer opposite the Hop attachment site.


Cell Stress & Chaperones | 2010

Increased expression of co-chaperone HOP with HSP90 and HSC70 and complex formation in human colonic carcinoma

Hiroshi Kubota; Soh Yamamoto; Eri Itoh; Yuki Abe; Asami Nakamura; Yukina Izumi; Hirotaka Okada; Masatake Iida; Hiroshi Nanjo; Hideaki Itoh; Yuzo Yamamoto

Co-chaperone HOP (also called stress-inducible protein 1) is a co-chaperone that interacts with the cytosolic 70-kDa heat shock protein (HSP70) and 90-kDa heat shock protein (HSP90) families using different tetratricopeptide repeat domains. HOP plays crucial roles in the productive folding of substrate proteins by controlling the chaperone activities of HSP70 and HSP90. Here, we examined the levels of HOP, HSC70 (cognate of HSP70, also called HSP73), and HSP90 in the tumor tissues from colon cancer patients, in comparison with the non-tumor tissues from the same patients. Expression level of HOP was significantly increased in the tumor tissues (68% of patients, n = 19). Levels of HSC70 and HSP90 were also increased in the tumor tissues (95% and 74% of patients, respectively), and the HOP level was highly correlated with those of HSP90 (r = 0.77, p < 0.001) and HSC70 (r = 0.68, p < 0.01). Immunoprecipitation experiments indicated that HOP complexes with HSC70 or HSP90 in the tumor tissues. These data are consistent with increased formation of co-chaperone complexes in colon tumor specimens compared to adjacent normal tissue and could reflect a role for HOP in this process.


FEBS Open Bio | 2014

The activation mechanism of the aryl hydrocarbon receptor (AhR) by molecular chaperone HSP90

Noriko Tsuji; Kana Fukuda; Yuhtaroh Nagata; Hirotaka Okada; Asami Haga; Shiori Hatakeyama; Shiho Yoshida; Tomoya Okamoto; Miki Hosaka; Kazuhiro Sekine; Kei Ohtaka; Soh Yamamoto; Michiro Otaka; Ewa Grave; Hideaki Itoh

We used an in situ proximity ligation assay to confirm whether AhR was translocated to the nucleus alone or together with HSP90. HSP90 was co‐localized with AhR after the nuclear translocation. It has been suggested that the ligand‐bound AhR was translocated to the nucleus with HSP90. Activated AhR acts as a transcription factor, as shown by the transcription induction of the gene CYP1A1 8 h after treatment with β‐NF.


FEBS Letters | 2010

Gentamicin inhibits HSP70-assisted protein folding by interfering with substrate recognition

Soh Yamamoto; Shunsuke Nakano; Kensuke Owari; Kazuhiko Fuziwara; Nobuaki Ogawa; Michiro Otaka; Kumiko Tamaki; Sumio Watanabe; Atsushi Komatsuda; Hideki Wakui; Kenichi Sawada; Hiroshi Kubota; Hideaki Itoh

MINT‐7384430: RNaseA (uniprotkb:P61823) binds (MI:0407) to HSP70 (uniprotkb:P34930) by surface plasmon resonance (MI:0107)


Helicobacter | 2015

Intrafamilial, Preferentially Mother-to-Child and Intraspousal, Helicobacter pylori Infection in Japan Determined by Mutilocus Sequence Typing and Random Amplified Polymorphic DNA Fingerprinting

Shin-ichi Yokota; Mutsuko Konno; Shin-ichi Fujiwara; Nariaki Toita; Michiko Takahashi; Soh Yamamoto; Noriko Ogasawara; Tsukasa Shiraishi

The infection route of Helicobacter pylori has been recognized to be mainly intrafamilial, preferentially mother‐to‐child, especially in developed countries. To determine the transmission route, we examined whether multilocus sequence typing (MLST) was useful for analysis of intrafamilial infection. The possibility of intraspousal infection was also evaluated.


FEBS Letters | 2008

Cisplatin differently affects amino terminal and carboxyl terminal domains of HSP90

Ryuichi Ishida; Yuka Takaoka; Soh Yamamoto; Toshio Miyazaki; Michiro Otaka; Sumio Watanabe; Atushi Komatsuda; Hideki Wakui; Kenichi Sawada; Hiroshi Kubota; Hideaki Itoh

The 90‐kDa heat shock protein (HSP90) is a molecular chaperone that assists in the folding and assembly of proteins in the cytosol. We previously demonstrated that the antineoplastic reagent, cisplatin, inhibits the aggregation prevention activity of mammalian HSP90. We now show that cisplatin binds both the amino terminal and carboxyl terminal domains of the human HSP90 and differently affects these two domains. Cisplatin blocks the aggregation prevention activity of HSP90C, but not HSP90N. In contrast, cisplatin induces a conformational change in HSP90N, but not HSP90C. These results indicate that cisplatin modulates the HSP90 activities through two different mechanisms using the two distinct binding sites of the HSP90 molecule.


Journal of Virology | 2012

Imiquimod Suppresses Propagation of Herpes Simplex Virus 1 by Upregulation of Cystatin A via the Adenosine Receptor A1 Pathway

Yuji Kan; Tamaki Okabayashi; Shin-ichi Yokota; Soh Yamamoto; Nobuhiro Fujii; Toshiharu Yamashita

ABSTRACT Imiquimod is recognized as an agonist for Toll-like receptor 7 (TLR7) in immunocompetent cells. TLR7, as well as TLR3 and TLR8, triggers the immune responses, such as the production of type I interferons (IFNs) and proinflammatory cytokines via recognition of viral nucleic acids in the infected cells. In this study, we proposed that imiquimod has an IFN-independent antiviral effect in nonimmune cells. Imiquimod, but not resiquimod, suppressed replication of human herpes simplex virus 1 (HSV-1) in FL cells. We analyzed alternation of gene expression by treatment with imiquimod using microarray analysis. Neither type I IFNs, nor TLRs, nor IFN-inducible antiviral genes were induced in imiquimod-treated FL cells. Cystatin A, a host cysteine protease inhibitor, was strongly upregulated by imiquimod and took a major part in the anti-HSV-1 activity deduced by the suppression experiment using its small interfering RNA. Upregulation of cystatin A was suggested to be mediated by antagonizing adenosine receptor A1 and activating the protein kinase A pathway. Imiquimod, but not resiquimod, was shown to interact with adenosine receptor A1. Imiquimod-induced anti-HSV-1 activity was observed in other cells, such as HeLa, SiHa, and CaSki cells, in a manner consistent with the cystatin A induction by imiquimod. These results indicated that imiquimod acted as an antagonist for adenosine receptor A1 and induced a host antiviral protein, cystatin A. The process occurred independently of TLR7 and type I IFNs.


Helicobacter | 2013

Positive relationship between a polymorphism in Helicobacter pylori neutrophil-activating protein a gene and iron-deficiency anemia.

Shin-ichi Yokota; Nariaki Toita; Soh Yamamoto; Nobuhiro Fujii; Mutsuko Konno

Numerous studies have suggested a link between iron‐deficiency anemia (IDA) and Helicobacter pylori infection. Previously, we found that strains isolated from IDA patients showed higher levels of Fe ion uptake and Fe‐ion‐dependent rapid proliferation than those of strains derived from patients without IDA.


Journal of Biological Chemistry | 2014

ATPase activity and ATP-dependent conformational change in the co-chaperone HSP70/HSP90-organizing protein (HOP).

Soh Yamamoto; Ganesh Prasad Subedi; Shinya Hanashima; Tadashi Satoh; Michiro Otaka; Hideki Wakui; Kenichi Sawada; Shin-ichi Yokota; Yoshiki Yamaguchi; Hiroshi Kubota; Hideaki Itoh

Background: HOP assists protein transfer in the HSP70- and HSP90-dependent protein-folding pathway. Results: HOP hydrolyzed ATP, and the region containing amino acids 1–359 (TPR1-TPR2A) was required for hydrolysis and direct interaction with ATP. Conclusion: HOP has slow ATPase activity and changes its conformation upon ATP hydrolysis. Significance: This is the first demonstration of the ATPase activity of HOP, and may enhance our understanding of the physiological function. Co-chaperones help to maintain cellular homeostasis by modulating the activities of molecular chaperones involved in protein quality control. The HSP70/HSP90-organizing protein (HOP) is a co-chaperone that cooperates with HSP70 and HSP90 in catalysis of protein folding and maturation in the cytosol. We show here that HOP has ATP-binding activity comparable to that of HSP70/HSP90, and that HOP slowly hydrolyzes ATP. Analysis of deletion mutants revealed that the ATPase domain of HOP is in the N-terminal TPR1-DP1-TPR2A segment. In addition, HOP changes its conformation in the presence of ATP. These results indicate that HOP is a unique co-chaperone that undergoes an ATP-dependent conformational change.


Pharmacological Research | 2016

Clarithromycin prevents human respiratory syncytial virus-induced airway epithelial responses by modulating activation of interferon regulatory factor-3.

Keisuke Yamamoto; Soh Yamamoto; Noriko Ogasawara; Kenichi Takano; Tsukasa Shiraishi; Toyotaka Sato; Ryo Miyata; Takuya Kakuki; Ryuta Kamekura; Takashi Kojima; Hiroyuki Tsutsumi; Tetsuo Himi; Shin-ichi Yokota

Macrolide antibiotics exert immunomodulatory activity by reducing pro-inflammatory cytokine production by airway epithelial cells, fibroblasts, vascular endothelial cells, and immune cells. However, the underlying mechanism of action remains unclear. Here, we examined the effect of clarithromycin (CAM) on pro-inflammatory cytokine production, including interferons (IFNs), by primary human nasal epithelial cells and lung epithelial cell lines (A549 and BEAS-2B cells) after stimulation by Toll-like receptor (TLR) and RIG-I-like receptor (RLR) agonists and after infection by human respiratory syncytial virus (RSV). CAM treatment led to a significant reduction in poly I:C- and RSV-mediated IL-8, CCL5, IFN-β and -λ production. Furthermore, IFN-β promoter activity (activated by poly I:C and RSV infection) was significantly reduced after treatment with CAM. CAM also inhibited IRF-3 dimerization and subsequent translocation to the nucleus. We conclude that CAM acts a crucial modulator of the innate immune response, particularly IFN production, by modulating IRF-3 dimerization and subsequent translocation to the nucleus of airway epithelial cells. This newly identified immunomodulatory action of CAM will facilitate the discovery of new macrolides with an anti-inflammatory role.

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Shin-ichi Yokota

Sapporo Medical University

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Toyotaka Sato

Sapporo Medical University

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Tsukasa Shiraishi

Sapporo Medical University

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Noriko Ogasawara

Sapporo Medical University

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Hiroyuki Tsutsumi

Sapporo Medical University

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