Sophie G. Pitois

Implementing and Innovating Marine Monitoring Approaches for Assessing Marine Environmental Status

Marine environmental monitoring has tended to focus on site-specific methods of investigation. These traditional methods have low spatial and temporal resolution and are relatively labor intensive per unit area/time that they cover. To implement the Marine Strategy Framework Directive (MSFD), European Member States are required to improve marine monitoring and design monitoring networks. This can be achieved by developing and testing innovative and cost-effective monitoring systems, as well as indicators of environmental status. Here, we present several recently developed methodologies and technologies to improve marine biodiversity indicators and monitoring methods. The innovative tools are discussed concerning the technologies presently utilized as well as the advantages and disadvantages of their use in routine monitoring. In particular, the present analysis focuses on: (i) molecular approaches, including microarray, Real Time quantitative PCR (qPCR), and metagenetic (metabarcoding) tools; (ii) optical (remote) sensing and acoustic methods; and (iii) in situ monitoring instruments. We also discuss their applications in marine monitoring within the MSFD through the analysis of case studies in order to evaluate their potential utilization in future routine marine monitoring. We show that these recently-developed technologies can present clear advantages in accuracy, efficiency and cost.

Long-term retrospective analysis of mackerel spawning in the North Sea: a new time series and modeling approach to CPR data

We present a unique view of mackerel (Scomber scombrus) in the North Sea based on a new time series of larvae caught by the Continuous Plankton Recorder (CPR) survey from 1948-2005, covering the period both before and after the collapse of the North Sea stock. Hydrographic backtrack modelling suggested that the effect of advection is very limited between spawning and larvae capture in the CPR survey. Using a statistical technique not previously applied to CPR data, we then generated a larval index that accounts for both catchability as well as spatial and temporal autocorrelation. The resulting time series documents the significant decrease of spawning from before 1970 to recent depleted levels. Spatial distributions of the larvae, and thus the spawning area, showed a shift from early to recent decades, suggesting that the central North Sea is no longer as important as the areas further west and south. These results provide a consistent and unique perspective on the dynamics of mackerel in this region and can potentially resolve many of the unresolved questions about this stock.

A Review of the Tools Used for Marine Monitoring in the UK: Combining Historic and Contemporary Methods with Modeling and Socioeconomics to Fulfill Legislative Needs and Scientific Ambitions

Marine environmental monitoring is undertaken to provide evidence that environmental management targets are being met. Moreover, monitoring also provides context to marine science and over the last century has allowed development of a critical scientific understanding of the marine environment and the impacts that humans are having on it. The seas around the UK are currently monitored by targeted, impact-driven, programmes (e.g. fishery or pollution based monitoring) often using traditional techniques, many of which have not changed significantly since the early 1900s. The advent of a new wave of automated technology, in combination with changing political and economic circumstances, means that there is currently a strong drive to move towards a more refined, efficient, and effective way of monitoring. We describe the policy and scientific rationale for monitoring our seas, alongside a comprehensive description of the types of equipment and methodology currently used and the technologies that are likely to be used in the future. We contextualise the way new technologies and methodologies may impact monitoring and discuss how whole ecosystems models can give an integrated, comprehensive approach to impact assessment. Furthermore, we discuss how an understanding of the value of each data point is crucial to assess the true costs and benefits to society of a marine monitoring programme.

Harmful algal blooms and climate change: exploring future distribution changes

Harmful algae can cause death in fish, shellfish, marine mammals, and humans, via their toxins or from effects associated with their sheer quantity. There are many species, which cause a variety of problems around north-west Europe, and the frequency and distribution of algal blooms have altered in the recent past. Species distribution modelling was used to understand how harmful algal species may respond in the future to climate change, by considering environmental preferences and how these may shift. Most distribution studies to date use low resolution global model outputs. In this study, high resolution, downscaled shelf seas climate projections for the north-west European shelf were nested within lower resolution global projections, to understand how the distribution of harmful algae may change by the mid to end of century. Projections suggest that the habitat of most species (defined by temperature, salinity, depth, and stratification) will shift north this century, with suitability increasing in the central and northern North Sea. An increase in occurrence here might lead to more frequent detrimental blooms if wind, irradiance and nutrient levels are also suitable. Prioritizing monitoring of species in these susceptible areas could help in establishing early-warning systems for aquaculture and health protection schemes.

Comparison of a Cost-Effective Integrated Plankton Sampling and Imaging Instrument with Traditional Systems for Mesozooplankton Sampling in the Celtic Sea

Three plankton collection methods were used to gather plankton samples in the Celtic Sea in October 2016. The Plankton Image Analysis (PIA) system is a high-speed colour line scan-based imaging instrument, which continuously pumps water, takes images of the passing particles, and identifies the zooplankton organisms present. We compared and evaluated the performance of the PIA against the Continuous Automatic Litter and Plankton Sampler (CALPS) and the traditional ring net vertical haul. The PIA underestimated species abundance compared to the CALPS and ring net and gave an image of the zooplankton community structure that was different from the other two devices. There was, however, good agreement in the spatial distribution of abundances across the three systems. Our study suggests that the image capture and analysis step rather than the sampling method was responsible for the discrepancies noted between the PIA and the other two datasets. The two most important issues appeared to be differences in sub-sampling between the PIA system and the other two devices, and blurring of specimen features due to limited PIA optical depth of field. A particular advantage of the CALPS over more traditional vertical sampling methods is that it can be integrated within existing multidisciplinary surveys at little extra cost without requiring additional survey time. The biggest advantage of using the PIA, in addition to those associated with using the CALPS, is that it removes the need to collect physical preserved samples for subsequent analysis in the laboratory. Provided a taxonomist is present on-board, the system in its current form can also integrate the sampling and analysis steps, thus increasing the speed, and cutting down substantially on the cost, of obtaining zooplankton information. Another clear advantage is that the images are available in near real-time. Once the noted issues have been dealt with, a revised PIA system will have the potential to become an important element of an integrated monitoring program, for the measurement of zooplankton.