Sophie Karrenberg

COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENT HELIANTHUS SPECIES

While speciation can be found in the presence of gene flow, it is not clear what impact this gene flow has on genome- and range-wide patterns of differentiation. Here we examine gene flow across the entire range of the common sunflower, H. annuus, its historically allopatric sister species H. argophyllus and a more distantly related, sympatric relative H. petiolaris. Analysis of genotypes at 26 microsatellite loci in 1015 individuals from across the range of the three species showed substantial introgression between geographically proximal populations of H. annuus and H. petiolaris, limited introgression between H. annuus and H. argophyllus, and essentially no gene flow between the allopatric pair, H. argophyllus and H. petiolaris. Analysis of sequence divergence levels among the three species in 1420 orthologs identified from EST databases identified a subset of loci showing extremely low divergence between H. annuus and H. petiolaris and extremely high divergence between the sister species H. annuus and H. argophyllus, consistent with introgression between H. annuus and H. petiolaris at these loci. Thus, at many loci, the allopatric sister species are more genetically divergent than the more distantly related sympatric species, which have exchanged genes across much of the genome while remaining morphologically and ecologically distinct.

Patterns in woody vegetation along the active zone of a near-natural Alpine river

In many European rivers regulation measures have led to the decline of braided channel systems and associated pioneer ecosystems. Knowledge of their natural functioning is necessary to develop appropriate management and restoration strategies. We examine how woody vegetation within the active zone of the near-natural Tagliamento, NE-Italy, is impacted by environmental variables and patch age. Within 65 plots in 13 river segments the basal area of all woody species was determined, and minimal patch age (8.4 ± 1.6 years) obtained by counting annual rings of the largest trees. Canonical correspondence analyses suggested that the woody vegetation was mainly structured by the longitudinal gradient incorporating air temperature and altitude. Small-scale variables, such as patch age, distance from the nearest channel and elevation above water level, also had significant but smaller effects. All four variables together explained 38% of the variation in species composition. This suggests that additional processes might be important, e.g. specifics of plant dispersal or spatial separation of suitable regeneration sites. The low age of woody vegetation within the active zone of the Tagliamento suggests that hydroengineering measures for restoration of regulated rivers should allow frequent and severe disturbance.

Pollen vectors and inflorescence morphology in four species of Salix

Abstract. Many plant species exhibit inflorescence morphologies intermediate between pollination syndromes and may therefore employ generalist pollination strategies. We studied how wind and insect pollination are related to inflorescence morphology in the floodplain species Salix alba, S. elaeagnos, S. daphnoides and S. triandra. Insect exclusion experiments showed that all four species were primarily pollinated by insects, but were capable of some seed set when wind was the only pollen vector. Such a generalist pollination system may provide reproductive assurance in these pioneer species. High wind pollination success was associated with slender and divided stigmatic lobes and low ovule number per catkin, which may enhance filtering capacity for airborne pollen. In contrast, species that relied more on insect pollination had robust stigmata and many ovules per catkin, which may reduce the number of insect visits necessary for pollination.

GENETIC AND ECOLOGICAL DIFFERENTIATION IN THE HYBRIDIZING CAMPIONS SILENE DIOICA AND S. LATIFOLIA

Abstract Ecological differentiation is a major contributor to the generation and maintenance of biological diversity. We investigated habitat differentiation between and within sites in the fully cross-fertile and hybridizing Silene dioica and S. latifolia using amplified fragment length polymorphisms (AFLP) profiles and corresponding vegetation relevés around individual plants. Nineteen study sites in the Swiss Alps included pure sites and contact sites (both taxa present within 30 m). In pure sites and at contact sites, the two taxa showed consistently differentiated AFLP banding patterns across regions but few discriminating bands. This indicates that although the two taxa are weakly differentiated, current introgression has not led to genome-wide admixture. Only three putative early generation hybrids were detected at contact sites. The habitats of the two taxa differed between pure sites with S. dioica occurring in moister, colder, and less-disturbed sites than S. latifolia. However, asymmetric habitat overlap was evident within contact sites found in intermediate conditions that were more similar to S. latifolia sites. This situation might favor introgression from S. dioica into S. latifolia. Evidence for habitat–genotype associations within contact sites was weak making habitat-mediated selection against intermediate phenotypes of hybrids unlikely in the contact sites investigated. We suggest that other reproductive barriers together with dispersal limitation contribute to the rarity of early generation hybrids.

Phenotypic trade-offs in the sexual reproduction of Salicaceae from flood plains

We studied the relationship of seed mass to seed longevity (controlled conditions) and to seed number in six species of Salicaceae (Populus nigra, Salix alba, S. daphnoides, S. elaeagnos, S. purpurea, and S. triandra) that frequently co-occur on European flood plains. These species regenerate sexually in the same habitat but differ in seed mass. Half-viability periods, i.e., the time after which 50% of the initially viable seeds no longer germinate, were short (between 6.5 ± 0.1 and 23.3 ± 0.3 d), and large numbers of seeds were produced (between 10 000 and 1 × 10(6) per plant). Mean seed mass ranged from 0.02 ± 0.001 mg in S. triandra to 0.80 ± 0.05 mg in P. nigra. Whereas seed mass was, against expectation, positively related to half-viability periods, seed number generally decreased with increasing seed mass. Thus, a phenotypic trade-off between seed mass and seed number appears to be accentuated by an increase in seed longevity with increasing seed mass.

Pollen competition as an asymmetric reproductive barrier between two closely related Silene species.

Reproductive barriers are important determinants of gene flow between divergent populations or species. We studied pollen competition as a post‐mating reproductive barrier between Silene dioica and S. latifolia. Gene flow between these species is extensive, but early‐generation hybrids are rare. In an experiment with conspecific, heterospecific and 50 : 50 mixed pollinations in the two species, pollination treatments did not significantly affect seed set and seed weight. However, molecular determination of siring success after mixed pollinations showed that fewer than expected hybrids were produced in S. latifolia (18% hybrids) but not in S. dioica (51% hybrids). This constitutes an asymmetric post‐mating reproductive barrier and likely contributes to the rarity of early‐generation hybrids. Our study shows that pollen competition can be an effective barrier to hybridization between closely related species that likely acts in concert with other reproductive barriers.

Ecologically relevant genetic variation from a non-Arabidopsis perspective

Ecologically relevant genetic variation occurs in genes harbouring alleles that are adaptive in some environments but not in others. Analysis of this type of genetic variation in model organisms has made substantial progress, and is now being expanded to other species in order to better cover the diversity of plant life. Recent advances in connecting ecological and molecular studies in non-model species have been made with regard to edaphic and climatic adaptation, plant reproduction, life-history parameters and biotic interactions. New research avenues that increase biological complexity and ecological relevance by integrating ecological experiments with population genetic and functional genomic approaches provide new insights into the genetic basis of ecologically relevant variation.

Reconstructing the History of Selection during Homoploid Hybrid Speciation

This study aims to identify selection pressures during the historical process of homoploid hybrid speciation in three Helianthus (sunflower) hybrid species. If selection against intrinsic genetic incompatibilities (fertility selection) or for important morphological/ecological traits (phenotypic selection) were important in hybrid speciation, we would expect this selection to have influenced the parentage of molecular markers or chromosomal segments in the hybrid species’ genomes. To infer past selection, we compared the parentage of molecular markers in high‐density maps of the three hybrid species with predicted marker parentage from an analysis of fertility selection in artificial hybrids and from the directions of quantitative trait loci effects with respect to the phenotypes of the hybrid species. Multiple logistic regression models were consistent with both fertility and phenotypic selection in all three species. To further investigate traits under selection, we used a permutation test to determine whether marker parentage predicted from groups of functionally related traits differed from neutral expectations. Our results suggest that trait groups associated with ecological divergence were under selection during hybrid speciation. This study presents a new method to test for selection and supports earlier claims that fertility selection and phenotypic selection on ecologically relevant traits have operated simultaneously during sunflower hybrid speciation.

The Response of the Alpine Dwarf Shrub Salix herbacea to Altered Snowmelt Timing : Lessons from a Multi-Site Transplant Experiment

Climate change is altering spring snowmelt patterns in alpine and arctic ecosystems, and these changes may alter plant phenology, growth and reproduction. To predict how alpine plants respond to shifts in snowmelt timing, we need to understand trait plasticity, its effects on growth and reproduction, and the degree to which plants experience a home-site advantage. We tested how the common, long-lived dwarf shrub Salix herbacea responded to changing spring snowmelt time by reciprocally transplanting turfs of S. herbacea between early-exposure ridge and late-exposure snowbed microhabitats. After the transplant, we monitored phenological, morphological and fitness traits, as well as leaf damage, during two growing seasons. Salix herbacea leafed out earlier, but had a longer development time and produced smaller leaves on ridges relative to snowbeds. Longer phenological development times and smaller leaves were associated with reduced sexual reproduction on ridges. On snowbeds, larger leaves and intermediate development times were associated with increased clonal reproduction. Clonal and sexual reproduction showed no response to altered snowmelt time. We found no home-site advantage in terms of sexual and clonal reproduction. Leaf damage probability depended on snowmelt and thus exposure period, but had no short-term effect on fitness traits. We conclude that the studied populations of S. herbacea can respond to shifts in snowmelt by plastic changes in phenology and leaf size, while maintaining levels of clonal and sexual reproduction. The lack of a home-site advantage suggests that S. herbacea may not be adapted to different microhabitats. The studied populations are thus unlikely to react to climate change by rapid adaptation, but their responses will also not be constrained by small-scale local adaptation. In the short term, snowbed plants may persist due to high stem densities. However, in the long term, reduction in leaf size and flowering, a longer phenological development time and increased exposure to damage may decrease overall performance of S. herbacea under earlier snowmelt.

Small-scale patterns in snowmelt timing affect gene flow and the distribution of genetic diversity in the alpine dwarf shrub Salix herbacea

Current threats to biodiversity, such as climate change, are thought to alter the within-species genetic diversity among microhabitats in highly heterogeneous alpine environments. Assessing the spatial organization and dynamics of genetic diversity within species can help to predict the responses of organisms to environmental change. In this study, we evaluated whether small-scale heterogeneity in snowmelt timing restricts gene flow between microhabitats in the common long-lived dwarf shrub Salix herbacea L. We surveyed 273 genets across 12 early- and late-snowmelt sites (that is, ridges and snowbeds) in the Swiss Alps for phenological variation over 2 years and for genetic variation using seven SSR markers. Phenological differentiation triggered by differences in snowmelt timing did not correlate with genetic differentiation between microhabitats. On the contrary, extensive gene flow appeared to occur between microhabitats and slightly less extensively among adjacent mountains. However, ridges exhibited significantly lower levels of genetic diversity than snowbeds, and patterns of effective population size (Ne) and migration (Nem) between microhabitats were strongly asymmetric, with ridges acting as sources and snowbeds as sinks. As no recent genetic bottlenecks were detected in the studied sites, this asymmetry is likely to reflect current meta-population dynamics of the species dominated by gene flow via seeds rather than ancient re-colonization after the last glacial period. Overall, our results suggest that seed dispersal prevents snowmelt-driven genetic isolation, and snowbeds act as sinks of genetic diversity. We discuss the consequences of such small-scale variation in gene flow and diversity levels for population responses to climate change.