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Dive into the research topics where Sorcha Finnegan is active.

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Featured researches published by Sorcha Finnegan.


Journal of Proteomics | 2009

Comparative analysis of synovial fluid and plasma proteomes in juvenile arthritis--proteomic patterns of joint inflammation in early stage disease.

David Gibson; Sarah Blelock; Jim Curry; Sorcha Finnegan; Adrienne Healy; Caitriona Scaife; Catherine McAllister; Stephen R. Pennington; Michael J. Dunn; Madeleine Rooney

Abstract Synovial fluid is a potential source of novel biomarkers for many arthritic disorders involving joint inflammation, including juvenile idiopathic arthritis. We first compared the distinctive protein ‘fingerprints’ of local inflammation in synovial fluid with systemic profiles within matched plasma samples. The synovial fluid proteome at the time of joint inflammation was then evaluated across clinical subgroups to identify early disease associated proteins. We measured the synovial fluid and plasma proteomes using the two-dimensional fluorescence difference gel electrophoresis approach. Image analysis software was used to highlight the expression levels of joint and subgroup associated proteins across the study cohort (n =32). A defined subset of 30 proteins had statistically significant differences (p <0.05) between sample types such that synovial fluid could be differentiated from plasma. Furthermore distinctive synovial proteome expression patterns segregate patient subgroups. Protein expression patterns localized in the chronically inflamed joint therefore have the potential to identify patients more likely to suffer disease which will spread from a single joint to multiple joints. The proteins identified could act as criteria to prevent disease extension by more aggressive therapeutic intervention directed at an earlier stage than is currently possible.


Journal of Proteome Research | 2009

Stratification and Monitoring of Juvenile Idiopathic Arthritis Patients by Synovial Proteome Analysis

David Gibson; Sorcha Finnegan; Grant Jordan; Caitriona Scaife; Simon Brockbank; Jim Curry; Catherine McAllister; Stephen R. Pennington; Michael J. Dunn; Madeleine Rooney

Juvenile idiopathic arthritis (JIA) comprises a poorly understood group of chronic, childhood onset, autoimmune diseases with variable clinical outcomes. We investigated whether profiling of the synovial fluid (SF) proteome by a fluorescent dye based, two-dimensional gel (DIGE) approach could distinguish patients in whom inflammation extends to affect a large number of joints, early in the disease process. SF samples from 22 JIA patients were analyzed: 10 with oligoarticular arthritis, 5 extended oligoarticular and 7 polyarticular disease. SF samples were labeled with Cy dyes and separated by two-dimensional electrophoresis. Multivariate analyses were used to isolate a panel of proteins which distinguish patient subgroups. Proteins were identified using MALDI-TOF mass spectrometry with expression further verified by Western immunoblotting and immunohistochemistry. Hierarchical clustering based on the expression levels of a set of 40 proteins segregated the extended oligoarticular from the oligoarticular patients (p < 0.05). Expression patterns of the isolated protein panel have also been observed over time, as disease spreads to multiple joints. The data indicates that synovial fluid proteome profiles could be used to stratify patients based on risk of disease extension. These protein profiles may also assist in monitoring therapeutic responses over time and help predict joint damage.


Investigative Ophthalmology & Visual Science | 2011

Mpdz null allele in an avian model of retinal degeneration and mutations in human leber congenital amaurosis and retinitis pigmentosa

Manir Ali; Paul Hocking; Martin McKibbin; Sorcha Finnegan; Mike Shires; James A. Poulter; Katrina Prescott; Adam D. Booth; Yasmin Raashid; Hussain Jafri; Jonathan B Ruddle; David A. Mackey; Samuel G. Jacobson; Carmel Toomes; Douglas H. Lester; David W. Burt; W.J. Curry; Chris F. Inglehearn

PURPOSE To identify the defective gene in the sex-linked, recessively inherited retinal dysplasia and degeneration (rdd) chicken and to search for the human equivalent disease. METHODS Microsatellites from chicken chromosome Z were genotyped in 77 progeny of a carrier male (rdd/+) and an affected female (rdd/W), and candidate genes were sequenced. Retinal cross-sections from rdd and wild-type birds were analyzed by immunohistology. The human orthologous gene was screened in a panel of archival DNAs from 276 patients with retinitis pigmentosa (RP) or Leber congenital amaurosis (LCA) using melting curve analysis and DNA sequencing. RESULTS The rdd locus was refined to an approximately 3-Mb region on chromosome Z. Sequence analysis identified a C→T change in the mpdz gene that created a premature stop codon (c.1372C→T, p.R458X), which segregated with the disease phenotype. As expected, the full-length mpdz protein was absent in rdd retinas, but in wild-type birds, it localized to the retinal outer limiting membrane, where it may have a role in the interactions between photoreceptors and Müller glia cells. The screen to identify the human equivalent disease found 10 heterozygous variants in the orthologous gene in patients with RP (three missense and two null alleles) and LCA (four missense and one null allele). CONCLUSIONS These findings reveal that MPDZ is essential for normal development of the retina and may have a role in maintaining photoreceptor integrity. The identification of human mutations suggests that MPDZ plays a role in human retinal disease, but the precise nature of this role remains to be determined.


Annals of the Rheumatic Diseases | 2011

Synovial membrane immunohistology in early untreated juvenile idiopathic arthritis: differences between clinical subgroups

Sorcha Finnegan; Susan Clarke; David Gibson; Catherine McAllister; Madeleine Rooney

Objective Juvenile idiopathic arthritis (JIA) consists of a heterogeneous group of inflammatory disorders, within which there are a number of clinical subgroups. Diagnosis and assignment to a particular subgroup can be problematical and more concise methods of subgroup classification are required. This study of the synovial membrane characterises the immunohistochemical features in early untreated, newly diagnosed JIA and compares findings with disease subgroup at 2 years. Methods 42 patients with newly diagnosed untreated JIA underwent synovial biopsy before the administration of steroids or disease-modifying antirheumatic drugs. Patients were classified as either polyarticular, persistent oligoarticular or extended-to-be oligoarticular. The location and semiquantitative analysis of T-cell subsets, B cells, macrophages and blood vessels were determined using immunohistochemistry. Results Synovial hyperplasia varied significantly between the three groups (p<0.0001). There was a significant difference in the CD3 T-cell population between the three groups (p=0.004) and between the extended-to-be and persistent group (p=0.032). CD4 expression was significantly higher in the poly and extended-to-be oligo groups (p=0.002), again the extended-to-be group had more CD4 T cells than the persistent group (p=0.008). B-cell infiltrates were more marked in the polyarticular group and were significantly higher in the extended-to-be group compared with the persistent group (p=0.005). Vascularisation was more pronounced in the polyarticular and extended-to-be oligoarticular groups, the extended-to-be group had significantly more vascularisation than the persistent group (p=0.0002). Conclusions There are significant differences in the histomorphometric features of synovial tissue between patient subgroups. Immunohistological examination of synovial membrane biopsies may provide further insight into early disease processes in JIA.


Journal of Proteomics | 2012

Vitamin D binding protein isoforms as candidate predictors of disease extension in childhood arthritis

David Gibson; Keri Newell; Alexandra N. Evans; Sorcha Finnegan; Gwen Manning; Caitriona Scaife; Catherine McAllister; Stephen R. Pennington; Mark W. Duncan; Terry L. Moore; Madeleine Rooney

Introduction. Juvenile idiopathic arthritis (JIA) comprises a poorly understood group of chronic autoimmune diseases with variable clinical outcomes. We investigated whether the synovial fluid (SF) proteome could distinguish a subset of patients in whom disease extends to affect a large number of joints. Methods. SF samples from 57 patients were obtained around time of initial diagnosis of JIA, labeled with Cy dyes and separated by two-dimensional electrophoresis. Multivariate analyses were used to isolate a panel of proteins which distinguish patient subgroups. Proteins were identified using MALDI-TOF mass spectrometry with expression verified by immunochemical methods. Protein glycosylation status was confirmed by hydrophilic interaction liquid chromatography. Results. A truncated isoform of vitamin D binding protein (VDBP) is present at significantly reduced levels in the SF of oligoarticular patients at risk of disease extension, relative to other subgroups (p < 0.05). Furthermore, sialylated forms of immunopurified synovial VDBP were significantly reduced in extended oligoarticular patients (p < 0.005). Conclusion. Reduced conversion of VDBP to a macrophage activation factor may be used to stratify patients to determine risk of disease extension in JIA patients.


Arthritis Research & Therapy | 2014

Synovial membrane protein expression differs between juvenile idiopathic arthritis subtypes in early disease

Sorcha Finnegan; Joanne L. Robson; Caitriona Scaife; Catherine McAllister; Stephen R. Pennington; David Gibson; Madeleine Rooney

IntroductionJuvenile idiopathic arthritis (JIA) is the most common rheumatological disease of childhood with a prevalence of around 1 in 1,000. Without appropriate treatment it can have devastating consequences including permanent disability from joint destruction and growth deformities. Disease aetiology remains unknown. Investigation of disease pathology at the level of the synovial membrane is required if we want to begin to understand the disease at the molecular and biochemical level. The synovial membrane proteome from early disease-stage, treatment naive JIA patients was compared between polyarticular and oligoarticular subgroups.MethodsProtein was extracted from 15 newly diagnosed, treatment naive JIA synovial membrane biopsies and separated by two dimensional fluorescent difference in-gel electrophoresis. Proteins displaying a two-fold or greater change in expression levels between the two subgroups were identified by matrix assisted laser desorption ionization-time of flight mass spectrometry with expression further verified by Western blotting and immunohistochemistry.ResultsAnalysis of variance analysis (P ≤ 0.05) revealed 25 protein spots with a two-fold or greater difference in expression levels between polyarticular and oligoarticular patients. Hierarchical cluster analysis with Pearson ranked correlation revealed two distinctive clusters of proteins. Some of the proteins that were differentially expressed included: integrin alpha 2b (P = 0.04); fibrinogen D fragment (P = 0.005); collagen type VI (P = 0.03); fibrinogen gamma chain (P = 0.05) and peroxiredoxin 2 (P = 0.02). The identified proteins are involved in a number of different processes including platelet activation and the coagulation system.ConclusionsThe data indicate distinct synovial membrane proteome profiles between JIA subgroups at an early stage in the disease process. The identified proteins also provide insight into differentially perturbed pathways which could influence pathological events at the joint level.


Investigative Ophthalmology & Visual Science | 2012

Profiling retinal biochemistry in the MPDZ mutant retinal dysplasia and degeneration chick: a model of human RP and LCA.

James Beattie; Sorcha Finnegan; Ross Hamilton; Manir Ali; Chris F. Inglehearn; Alan W. Stitt; John J. McGarvey; Paul Hocking; W.J. Curry

PURPOSE Raman microscopy, a rapid nondestructive technique that profiles the composition of biological samples, was used to characterize retinal biochemistry in the retinal dysplasia and degeneration (rdd) and wild-type (wt) chick retina during retinogenesis and at hatching. METHODS Embryonic day (E)13 and posthatch day (P)1 rdd and wt retinal cross-sections (n = 3 of each line at each age) were profiled using 633 helium-neon laser excitation. The biochemical composition was determined using computational analysis of the Raman spectra. In parallel histology, TUNEL and glial fibrillary acidic protein (GFAP) immunostaining were used to visualize retinal dysfunction. RESULTS Principal component (PC) analysis of the Raman spectra identified 50 major biochemical profiles, but only PCs that made significant contributions to variation within rdd and wt retina were mapped. These significant PCs were shown to arise from DNA, various fatty acids, melanin, and a number of proteins. Distinct patterns of GFAP immunostaining and a larger population of TUNEL-positive nuclei were observed in the rdd versus wt retina. CONCLUSIONS This study has demonstrated that Raman microscopy can discriminate between major retinal biomolecules, thus providing an unbiased account of how their composition varies due to the impact of the MPDZ null mutation in the rdd chick relative to expression in the normal wt retina.


Annals of the Rheumatic Diseases | 2013

THU0288 Proteomic profiling of the synovial membrane in early untreated juvenile idiopathic arthritis

Sorcha Finnegan; David Gibson; Mary Rooney

Background Juvenile idiopathic arthritis (JIA) is the one of the most common chronic childhood diseases with a prevalence of around 1/1000 [1]. Over time JIA can result in persistent joint inflammation leading to chronic pain and stiffness, joint deformity and damage. Disease aetiology remains unknown. Investigation of disease pathology at the level of the synovial membrane (SM) is required if we want to begin to understand the disease at the molecular and biochemical level. Objectives Proteomics enables us to better understand the disease process. Thus we undertook proteomic analysis of the SM from early disease-stage, treatment naïve JIA patients in order to identify protein expression profiles that could define JIA subgroups and help explain disease pathology. Methods SM biopsies were acquired from 16 newly diagnosed, untreated JIA patients (8 polyarticular and 8 oligoarticular) under general anaesthetic. After a 2 year follow up none of patients in the oligoarticular group had extended and so this group of patients were termed persistent oligoarticular. Protein was extracted from SM in lysis buffer. Each SM sample was minimally labeled with either Cy5 or Cy3 fluorescent dyes and an internal pooled standard (Cy2) was included on each gel. Proteins were separated by 2-D Fluorescence Difference Gel Electrophoresis (2D DIGE). Gel images were analysed and proteins displaying a 2-fold or greater change in expression levels between oligoarticular and polyarticular patients were identified by mass spectrometry (MS) with expression further verified by Western blotting. Proteins were then localised within the SM by immunohistochemistry. Results 2D DIGE analysis revealed an average of 460 spots per pH 4-7, 11cm gel which were matched across all 16 gels. ANOVA revealed 21 spots that were differentially expressed (2 fold or more change in expression levels) between polyarticular and oligoarticular patients (p≤0.05); 14 spots were expressed at 2-fold or higher in the oligoarticular group and 7 were expressed at 2-fold or higher in the polyarticular group. Principal component analysis (PCA) indicated that the synovial membrane proteome forms 2 distinct groups of patients in an unsupervised fashion. Hierarchical cluster analysis (HCA) was used to examine protein expression patterns and Pearson ranked correlation revealed two distinctive clusters of proteins. Conclusions The data indicates that SM proteome profiles could be used to stratify patients based on disease subgroup. The ability to identify, quantify and localise these specific target proteins in our patient samples would not only provide a novel insight into JIA disease pathology but may also provide potential therapeutic targets which could in turn be used to guide diagnosis and treatment. References Symmons DP, Jones M, Osborne J, Sills J, Southwood TR, Woo P. Pediatric rheumatology in the United Kingdom: data from the British Pediatric Rheumatology Group National Diagnostic Register. The Journal of rheumatology 1996;23(11):1975-1980. Disclosure of Interest None Declared


Annals of the Rheumatic Diseases | 2013

THU0287 Glycosylation of vitamin D binding protein reduced in juvenile idiopathic arthritis patients at risk of disease extension

David Gibson; Sorcha Finnegan; Gwen Manning; Mark W. Duncan; Stephen R. Pennington; Terry L. Moore; Madeleine Rooney

Background Juvenile idiopathic arthritis (JIA) comprises a poorly understood group of chronic, childhood onset, autoimmune diseases with variable clinical outcomes. Objectives We investigated whether profiling of the synovial fluid (SF) proteome by a fluorescent dye based, two-dimensional gel (DIGE) approach could distinguish the subset of patients in whom inflammation extends to affect a large number of joints, early in the disease process. The post-translational modifications to candidate protein markers were verified by a novel deglycosylation strategy. Methods SF samples from 57 patients were obtained around time of initial diagnosis of JIA. At 1 year from inclusion patients were categorized according to ILAR criteria as oligoarticular arthritis (n=26), extended oligoarticular (n=8) and polyarticular disease (n=18). SF samples were labeled with Cy dyes and separated by two-dimensional electrophoresis. Multivariate analyses were used to isolate a panel of proteins which distinguish patient subgroups. Proteins were identified using MALDI-TOF mass spectrometry with vitamin D binding protein (VDBP) expression and siaylation further verified by immunohistochemistry, ELISA test and immunoprecipitation. Candidate biomarkers were compared to conventional inflammation measure C-reactive protein (CRP). Sialic acid residues were enzymatically cleaved from immunopurified SF VDBP, enriched by hydrophilic interaction liquid chromatography (HILIC) and analysed by mass spectrometry. Results Hierarchical clustering based on the expression levels of a set of 23 proteins segregated the extended-to-be oligoarticular from the oligoarticular patients. A cleaved isoform of VDBP, spot 873, is present at significantly reduced levels in the SF of oligoarticular patients at risk of disease extension, relative to other subgroups (p<0.05). Conversely total levels of vitamin D binding protein are elevated in plasma and ROC curves indicate an improved diagnostic sensitivity to detect patients at risk of disease extension, over both spot 873 and CRP levels. Sialysed forms of intact immunopurified VDBP were more prevalent in persistent oligoarticular patient synovial fluids. Conclusions The data indicate that a subset of the synovial fluid proteome may be used to stratify patients to determine risk of disease extension. Reduced conversion of VDBP to a macrophage activation factor may represent a novel pathway contributing to increased risk of disease extension in JIA patients. Disclosure of Interest None Declared


Molecular Vision | 2010

Proteomic profiling of the retinal dysplasia and degeneration chick retina

Sorcha Finnegan; Joanne L. Robson; Paul Hocking; Manir Ali; Chris F. Inglehearn; Alan W. Stitt; W.J. Curry

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David Gibson

Queen's University Belfast

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Madeleine Rooney

Queen's University Belfast

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W.J. Curry

Queen's University Belfast

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Paul Hocking

University of Edinburgh

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Adrienne Healy

Queen's University Belfast

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