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Featured researches published by Stacy Kim.


Journal of Geophysical Research | 1994

Larval dispersal via entrainment into hydrothermal vent plumes

Stacy Kim; Lauren S. Mullineaux; Karl R. Helfrich

One of the most intriguing ecological questions remaining unanswered about hydrothermal vents is how vent organisms disperse and persist. Because vent species are generally endemic and their habitat is patchy and ephemeral on time scales as short as decades, they must disperse frequently, presumably in a planktonic larval stage. We suggest that dispersal occurs not only in near-bottom currents but also several hundred meters above the seafloor at the level of the laterally spreading hydrothermal plumes. Using a standard buoyant plume model and observed larval abundances near hydrothermal vents at 9°50′N along the East Pacific Rise, we estimate a mean vertical flux of approximately 100 vent larvae/h at a single black smoker. Larval abundances were extremely variable near vents, resulting in a range in estimated fluxes of at least an order of magnitude. The suitability of the plume model for these calculations was determined by releasing dyes (fluorescein and rhodamine) as larval mimics into a black smoker plume. The plume model predicted dye fluxes in the plume adequately, given the short averaging times of our measurements and the difficulty of sampling the plume centerline. Our calculations of substantial numbers of vent larvae entrained into the plume support the idea that transport in the lateral plume is an important mechanism of dispersal. Because vertical shear in flows above vents can cause larval dispersal trajectories in the plume to deviate considerably from those along the seafloor, larvae in the plume may have access to habitats that are unreachable by larvae in near-bottom flows.


PLOS ONE | 2013

Recruitment, Growth and Mortality of an Antarctic Hexactinellid Sponge, Anoxycalyx joubini

Paul K. Dayton; Stacy Kim; Shannon C. Jarrell; John S. Oliver; Kamille Hammerstrom; Jennifer L. Fisher; Kevin O’Connor; Julie S. Barber; Gordon A. Robilliard; James P. Barry; Andrew R. Thurber; Kathy Conlan

Polar ecosystems are sensitive to climate forcing, and we often lack baselines to evaluate changes. Here we report a nearly 50-year study in which a sudden shift in the population dynamics of an ecologically important, structure-forming hexactinellid sponge, Anoxycalyx joubini was observed. This is the largest Antarctic sponge, with individuals growing over two meters tall. In order to investigate life history characteristics of Antarctic marine invertebrates, artificial substrata were deployed at a number of sites in the southern portion of the Ross Sea between 1967 and 1975. Over a 22-year period, no growth or settlement was recorded for A. joubini on these substrata; however, in 2004 and 2010, A. joubini was observed to have settled and grown to large sizes on some but not all artificial substrata. This single settlement and growth event correlates with a region-wide shift in phytoplankton productivity driven by the calving of a massive iceberg. We also report almost complete mortality of large sponges followed over 40 years. Given our warming global climate, similar system-wide changes are expected in the future.


Marine Pollution Bulletin | 2010

Benthic changes at McMurdo Station, Antarctica following local sewage treatment and regional iceberg-mediated productivity decline.

Kathleen E. Conlan; Stacy Kim; Andrew R. Thurber; E. Hendrycks

McMurdo Station, the largest research station in Antarctica, ceased on-site garbage dumping in 1988 and initiated sewage treatment in 2003. In 2003-2004 its sea-ice regime was altered by the massive B-15A and C-19 iceberg groundings in the Ross Sea, approximately 100km distant. Here we follow macrofaunal response to these changes relative to a baseline sampled since 1988. In the submarine garbage dump, surface contaminants levels have declined but associated macrofaunal recolonization is not yet evident. Although sewage-associated macrofauna were still abundant around the outfall nearly 2yr after initiation of treatment, small changes downcurrent as far as 434m from the outfall suggest some community recovery. Widespread community changes in 2003-2004, not seen in the decade previously, suggests that the benthos collectively responded to major changes in sea-ice regime and phytoplankton production caused by the iceberg groundings.


PLOS ONE | 2014

Anthropogenic Disturbance and Biodiversity of Marine Benthic Communities in Antarctica: A Regional Comparison

Jonathan S. Stark; Stacy Kim; John S. Oliver

The impacts of two Antarctic stations in different regions, on marine sediment macrofaunal communities were compared: McMurdo, a very large station in the Ross Sea; and Casey, a more typical small station in East Antarctica. Community structure and diversity were compared along a gradient of anthropogenic disturbance from heavily contaminated to uncontaminated locations. We examined some of the inherent problems in comparing data from unrelated studies, such as different sampling methods, spatial and temporal scales of sampling and taxonomic uncertainty. These issues generated specific biases which were taken into account when interpreting patterns. Control sites in the two regions had very different communities but both were dominated by crustaceans. Community responses to anthropogenic disturbance (sediment contamination by metals, oils and sewage) were also different. At McMurdo the proportion of crustaceans decreased in disturbed areas and polychaetes became dominant, whereas at Casey, crustaceans increased in response to disturbance, largely through an increase in amphipods. Despite differing overall community responses there were some common elements. Ostracods, cumaceans and echinoderms were sensitive to disturbance in both regions. Capitellid, dorvelleid and orbiniid polychaetes were indicative of disturbed sites. Amphipods, isopods and tanaids had different responses at each station. Biodiversity and taxonomic distinctness were significantly lower at disturbed locations in both regions. The size of the impact, however, was not related to the level of contamination, with a larger reduction in biodiversity at Casey, the smaller, less polluted station. The impacts of small stations, with low to moderate levels of contamination, can thus be as great as those of large or heavily contaminated stations. Regional broad scale environmental influences may be important in determining the composition of communities and thus their response to disturbance, but there are some generalizations regarding responses which will aid future management of stations.


Antarctic Science | 2005

Possible food caching and defence in the Weddell seal: observations from McMurdo Sound, Antarctica

Stacy Kim; K. Conlan; D.P. Malone; C.V. Lewis

On the basis of observations of Weddell seals (Leptonychotes weddellii Lesson) made in the course of studying shallow-water benthic communities in McMurdo Sound, Antarctica, we suggest that caching and/or defence of uneaten food may be a strategy practiced by this animal. Such a phenomenon is uncommon but taxonomically widespread among vertebrates. Depending on circumstances, it is termed hoarding, caching, or storage and may be short- or long-term, include defence of the resource, or have other variable expressions, with the common threads being deferred consumption and deterrence of consumption by others (Vanderwall 1990). Many vertebrate taxa exhibit hoarding behaviour, including rodents (e.g. Sciuridae), carnivores (e.g. Canidae, Felinidae) and birds (e.g. Corvidae, Picidae). No form of food caching, to our knowledge, has ever been reported in a wild pinniped.


Integrative and Comparative Biology | 2010

Polar Ecosystem Dynamics: Recovery of Communities from Organic Enrichment in McMurdo Sound, Antarctica

Stacy Kim; Kamille K. Hammerstom; Kathleen E. Conlan; Andrew R. Thurber

Community structure and diversity are influenced by patterns of disturbance and input of food. In Antarctica, the marine ecosystem undergoes highly seasonal changes in availability of light and in primary production. Near research stations, organic input from human activities can disturb the regular productivity regime with a consistent input of sewage. McMurdo Sound has both high-productivity and low-productivity habitats, thereby providing an ideal test bed for community recovery dynamics under polar conditions. We used experimental manipulations of the subtidal communities to test the hypotheses that (1) benthic communities respond differently to disturbance from organic enrichment versus burial and (2) community response also varies in areas with different natural patterns of food supply. Both in low- and high-food habitats, the strongest community response was to organic enrichment and resulted in dominance of typical organic-enrichment specialists. In habitats with highly seasonal productivity, community response was predictable and recovery was rapid. In habitats with low productivity, community variability was high and caging treatments suggested that inconsistencies were due to patchy impacts by scavengers. In areas normally subject to regular organic enrichment, either from primary production or from further up the food web (defecation by marine mammals), recovery of benthic communities takes only years even in a polar system. However, a low-productivity regime is as common in near shore habitats around the continent; under these conditions, recovery of benthic communities from disturbance is likely to be much slower and follow a variable ecological trajectory.


Virus Evolution | 2017

Diverse and highly recombinant anelloviruses associated with Weddell seals in Antarctica

Elizabeth Fahsbender; Jennifer M. Burns; Stacy Kim; Simona Kraberger; Greg Frankfurter; Alice A. Eilers; Michelle R. Shero; Roxanne S. Beltran; Amy L. Kirkham; R. B. McCorkell; Rachel K. Berngartt; Maketalena F. Male; Grant Ballard; David G. Ainley; Mya Breitbart; Arvind Varsani

Abstract The viruses circulating among Antarctic wildlife remain largely unknown. In an effort to identify viruses associated with Weddell seals (Leptonychotes weddellii) inhabiting the Ross Sea, vaginal and nasal swabs, and faecal samples were collected between November 2014 and February 2015. In addition, a Weddell seal kidney and South Polar skua (Stercorarius maccormicki) faeces were opportunistically sampled. Using high throughput sequencing, we identified and recovered 152 anellovirus genomes that share 63–70% genome-wide identities with other pinniped anelloviruses. Genome-wide pairwise comparisons coupled with phylogenetic analysis revealed two novel anellovirus species, tentatively named torque teno Leptonychotes weddellii virus (TTLwV) -1 and -2. TTLwV-1 (n = 133, genomes encompassing 40 genotypes) is highly recombinant, whereas TTLwV-2 (n = 19, genomes encompassing three genotypes) is relatively less recombinant. This study documents ubiquitous TTLwVs among Weddell seals in Antarctica with frequent co-infection by multiple genotypes, however, the role these anelloviruses play in seal health remains unknown.


Antarctic Science | 2016

Unusual coastal flood impacts in Salmon Valley, McMurdo Sound, Antarctica

Paul K. Dayton; Kamille Hammerstrom; Shannon C. Jarrell; Stacy Kim; Walter Nordhausen; D.J. Osborne; Simon F. Thrush

Abstract Large floods bringing significant sediments into the coastal oceans have not been observed in Antarctica. We report evidence of a large flood event depositing over 50 cm of sediment onto the nearshore benthic habitat at Salmon Bay, Antarctica, between 1990 and 2010. Besides direct observations of the sedimentation, the evidence involves a debris flow covering old tyre tracks from the early 1960s, as well as evidence of a considerable amount of sediment transported onto the Salmon Creek delta. We believe that the flood was sourced from the Salmon Glacier and possibly the smaller Blackwelder Glacier. Such floods will be more common in the future and it is important to better understand their ecological impacts with good monitoring programmes.


Journal of Field Robotics | 2018

The ARTEMIS under‐ice AUV docking system

Peter W. Kimball; Evan B. Clark; Mark Scully; Kristof Richmond; Chris Flesher; Laura Lindzey; John Harman; Keith Huffstutler; Justin Lawrence; Scott Lelievre; Joshua Moor; Brian Pease; Vickie Siegel; Luke Winslow; Donald D. Blankenship; Peter T. Doran; Stacy Kim; Britney E. Schmidt; William C. Stone

The ARTEMIS docking system demonstrates autonomous docking capability applicable to robotic exploration of sub-ice oceans and sub-glacial lakes on planetary bodies, as well as here on Earth. In these applications, melted or drilled vertical access shafts restrict vehicle geometry as well as the in-water infrastructure that may be deployed. The ability of the vehicle to return reliably and precisely to the access point is critical for data return, battery charging, and/or vehicle recovery. This paper presents the mechanical, sensor, and software components that make up the ARTEMIS docking system, as well as results from field deployment of the system to McMurdo Sound, Antarctica in the austral spring of 2015. The mechanical design of the system allows the vehicle to approach the dock from any direction and to pitch up after docking for recovery through a vertical access shaft. It uses only a small volume of in-water equipment and may be deployed through a narrow vertical access shaft. The software of the system reduces position estimation error with a hierarchical combination of dead reckoning, acoustic aiding, and machine vision. The system provides critical operational robustness, enabling the vehicle to return autonomously and precisely to the access shaft and latch to the dock with no operator input.


Archive | 1996

Larval dispersal between hydrothermal vent habitats

Stacy Kim

Abstract : Hydrothermal vents are isolated, impermanent habitats that support unique biotic assemblages. The processes by which these communities establish themselves and maintain species identity across geographic gaps are currently unknown. Planktonic vent larvae can be dispersed by buoyant plumes of hot hydrothermal fluid that rise from vents and entrain near bottom water, carrying it several hundred meters above the seafloor before spreading laterally. A standard plume model describes vent plumes well, and predicts that up to 97% of the larvae produced by a vent community will be entrained. Gastropod larvae found in the plume can be identified as specific vent species by scanning electron microscopy. Species level larval identification is a vital step in defining the overall distribution patterns and dispersal pathways of vent larvae. The potential importance of physical flow patterns, geological structure, and biological constraints were compared using a spatially explicit type of mathematical model, called cellular automata. The results of the model simulations suggest that dispersal in plume flow is vital to long term persistence of vent populations, and that fecundity and larval mortality interact with habitat spacing and vent lifespan to influence the stability of the overall population.

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John S. Oliver

Moss Landing Marine Laboratories

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Kamille Hammerstrom

Moss Landing Marine Laboratories

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Paul K. Dayton

Scripps Institution of Oceanography

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Shannon C. Jarrell

Scripps Institution of Oceanography

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Kendra L. Daly

University of South Florida

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Jonathan S. Stark

Australian Antarctic Division

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Benjamin Saenz

University of South Florida

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D.J. Osborne

Monterey Bay Aquarium Research Institute

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