Stephan Denifl

Vibrational Feshbach resonances in uracil and thymine

Sharp peaks in the dissociative electron attachment (DEA) cross sections of uracil and thymine at energies below 3 eV are assigned to vibrational Feshbach resonances (VFRs) arising from coupling between the dipole bound state and the temporary anion state associated with occupation of the lowest sigma* orbital. Three distinct vibrational modes are identified, and their presence as VFRs is consistent with the amplitudes and bonding characteristics of the sigma* orbital wave function. A deconvolution method is also employed to yield higher effective energy resolution in the DEA spectra. The site dependence of DEA cross sections is evaluated using methyl substituted uracil and thymine to block H atom loss selectively. Implications for the broader issue of DNA damage are briefly discussed.

High resolution dissociative electron attachment to gas phase adenine.

The dissociative electron attachment to the gas phase nucleobase adenine is studied using two different experiments. A double focusing sector field mass spectrometer is utilized for measurements requiring high mass resolution, high sensitivity, and relative ion yields for all the fragment anions and a hemispherical electron monochromator instrument for high electron energy resolution. The negative ion mass spectra are discussed at two different electron energies of 2 and 6 eV. In contrast to previous gas phase studies a number of new negative ions are discovered in the mass spectra. The ion efficiency curves for the negative ions of adenine are measured for the electron energy range from about 0 to 15 eV with an electron energy resolution of about 100 meV. The total anion yield derived via the summation of all measured fragment anions is compared with the total cross section for negative ion formation measured recently without mass spectrometry. For adenine the shape of the two cross section curves agrees well, taking into account the different electron energy resolutions; however, for thymine some peculiar differences are observed.

Electron attachment to gas-phase uracil.

We present results about dissociative electron attachment (DEA) to gas-phase uracil (U) for incident electron energies between 0 and 14 eV using a crossed electron/molecule beam apparatus. The most abundant negative ion formed via DEA is (U-H)-, where the resonance with the highest intensity appears at 1.01 eV. The anion yield of (U-H)- shows a number of peaks, which can be explained in part as being due to the formation of different (U-H)- isomers. Our results are compared with high level ab initio calculations using the G2MP2 method. There was no measurable amount of a parent ion U-. We also report the occurrence of 12 other fragments produced by dissociative electron attachment to uracil but with lower cross sections than (U-H)-. In addition we observed a parasitic contaminating process for conditions where uracil was introduced simultaneously with calibrant gases SF6 and CCl4 that leads to a sharp peak in the (U-H)- cross section close to 0 eV. For (U-H)- and all other fragments we determined rough measures for the absolute partial cross section yielding in the case of (U-H)- a peak value of sigma (at 1.01 eV)=3 x 10(-20) m2.

Bond selective dissociative electron attachment to thymine

Free-electron attachment to thymine and partially deuterated thymine, where D replaces H at all carbon atoms, is studied in the electron energy range from about 0 to 15 eV. The formation of fragment anions that are formed by the loss of one or two H (D) atoms is analyzed as a function of the incident electron energy using a crossed electron/neutral beam apparatus in combination with a quadrupole mass spectrometer. By using partially deuterated thymine and quantum-chemical calculation a bond selectivity for the loss of one and two hydrogen atoms is observed that is determined only by the kinetic energy of the incident electron.

The submersion of sodium clusters in helium nanodroplets: identification of the surface → interior transition.

The submersion of sodium clusters beyond a critical size in helium nanodroplets, which has recently been predicted on theoretical grounds, is demonstrated for the first time. Confirmation of a clear transition from a surface location, which occurs for alkali atoms and small clusters, to full immersion for larger clusters, is provided by identifying the threshold electron energy required to initiate Na(n) cluster ionization. On the basis of these measurements, a lower limit for the cluster size required for submersion, n ≥ 21, has been determined. This finding is consistent with the recent theoretical prediction.

Ultracold Water Cluster Anions

Attachment of free electrons to water clusters embedded in helium droplets leads to water-cluster anions (H2O)n(-) and (D2O)n(-) of size n > or = 2. Small water-cluster anions bind to up to 10 helium atoms, providing compelling evidence for the low temperature of these complexes, but the most abundant species are bare cluster anions. In contrast to previous experiments on bare water clusters, which showed very pronounced magic and anti-magic anion sizes below n = 12, the presently observed size distributions vary much more smoothly, and all sizes are easily observed. Noticeable differences are also observed in the stoichiometry of fragment anions formed upon dissociative electron attachment and the energy dependence of their yield. Spectroscopic characterization of these ultracold water-cluster anions promises to unravel the relevance of metastable configurations in experiments and the nature of the still controversial bonding sites for the excess electron in small water-cluster anions.

Electron attachment to 5-chloro uracil

Electron attachment (EA) and dissociative electron attachment (DEA) to 5-chloro uracil (5-ClU) was studied in the gas phase using a crossed electron/molecule beams technique. Besides production of a parent anion via a zero energy resonance, ion yields of nine different negative ions were observed in the electron energy range from about 0 to 14 eV. In the electron energy range from about zero to 5 eV, the formation of a transient negative ion was induced by electron attachment to the π* resonances located at about 0.24, 1.5, and 3.6 eV leading subsequently by unimolecular decay to various negative fragment ions. Absolute partial cross sections for EA and DEA to 5-ClU were obtained from the measured ion yields using a simple calibrating method. The dominant negative ion observed in the present experiment was (C4H2N2O2)− (corresponding to 5-ClU minus HCl) with a mass to charge ratio of 110, followed by Cl− ion (mass to charge ratios 35 and 37), the partial cross sections being σ(0.23 eV)=5×10−18 m2 and σ(0.2...

Dissociative Electron Attachment to DNA Bases Near Absolute Zero Temperature: Freezing Dissociation Intermediates

Solvation and temperature are two important variables for controlling chemical change. The rates and products of chemical reactions can alter dramatically in response to large changes in temperature or in moving from the gas to the condensed phase. Understanding such changes provides insight into fundamental aspects of chemistry. Herein, we explore a transition in chemistry brought about by a concomitant change in phase and temperature. We measure the dissociative attachment of electrons to biological molecules—a process important in the radiation damage of DNA—both as free molecules in the gas phase at 400 K and when embedded in superfluid helium at a temperature near absolute zero. The goal is to explore the extent to which the dissociation of the intermediate negative ion that is responsible for the initial attachment of the electrons can be frozen in the extreme environment of ultra-cold and superfluid helium in which molecular vibrations and rotations are in their lowest energy states. The pioneering work of Boudaiffa et al. has demonstrated that low-energy electrons have the potential effectively to induce strand breaks in plasmid DNA and this has motivated a wealth of electron attachment studies with building blocks of DNA in the gas phase 3] and when deposited on thin films , both experimental and theoretical. The unique capability of low-energy electrons to break specific bonds selectively has also been shown previously in gas-phase studies in our own laboratory with the isolated nucleobases (NBs) thymine (T), adenine (A) and uracil. The attachment of a free electron to an isolated nucleobase initially forms an unstable transient negative ion, [NBC ]*, with the same geometry as the neutral precursor (a vertical transition). The attached electron may occupy an antibonding orbital or the vertical transition may end up in the repulsive part of a potential energy curve that begins to separate parts of the transient negative ion. As long as the potential energy of [NBC ]* is higher than that of NB + e, the electron can be detached retaining its initial kinetic energy (elastic scattering) or a reduced kinetic energy (inelastic scattering). Moreover, autodetachment competes with dissociative electron attachment (DEA) until the internuclear separation between the charged and neutral fragments exceeds the intersection of the corresponding potential energy curves of the anionic and neutral system. The time to reach this point of no return towards DEA depends strongly on the mass of the lightest fragment and is shortest if one of the fragments is a hydrogen atom. This may be one reason for the high probability of DEA in NBs and other biomolecules to form a closed-shell anion [NB H] upon electron attachment. 9, 10] In the gas phase, the maximum cross section for hydrogen loss, illustrated in channel 1 a [Reaction (1 a)] , is at around 1 eV for all DNA bases . The H formation, channel 1 b [Reaction (1 b)] , is observed at higher electron energies and has a much lower cross section than neutral hydrogen loss. Furthermore, pronounced site selectivity as a function of the electron energy was discovered for H formation upon free electron attachment to NBs and other organic molecules, as shown in Reaction (1):

Electron-impact ionization of helium clusters close to the threshold: appearance energies.

We have investigated the ionization threshold behavior of small helium cluster ions (cluster size n=2-10) formed via electron-impact ionization of neutral helium droplets and derive appearance energies for mass-selected cluster ions using a nonlinear least-square-fitting procedure. Moreover, we report magic numbers in the mass spectrum observed at the electron energy of 70 eV. The apparatus used for the present measurements is a hemispherical electron monochromator combined with a quadrupole mass spectrometer. Our experiment demonstrates that helium clusters are not only exclusively formed via direct ionization above the atomic ionization potential but also indirectly via autoionizing Rydberg states. The present results are compared with previous electron-impact and photoionization results.

Free-electron attachment to coronene and corannulene in the gas phase

Electron attachment to the polyaromatic hydrocarbons coronene and corannulene is studied in the electron energy range of about 0-14 eV using a high-resolution crossed electron-neutral beam setup. The major anions observed are the parent anions peaking at about 0 eV with cross sections of 3.8 x 10(-20) and 1 x 10(-19) m(2), respectively. The only fragment anions formed in coronene and corannulene are the dehydrogenated coronene and corannulene anions. Other anions observed in the negative mass spectra at about 0 eV can be ascribed to impurities of the sample. High-level quantum-mechanical studies are carried out for the determination of electron affinities, hydrogen binding energies, and structures of both molecules. The behavior of coronene and corannulene upon electron attachment is compared with that of other polyaromatic hydrocarbons studied previously.