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Featured researches published by Stephan Hoyer.


New Journal of Physics | 2010

Limits of quantum speedup in photosynthetic light harvesting

Stephan Hoyer; Mohan Sarovar; K. Birgitta Whaley

It has been suggested that excitation transport in photosynthetic light-harvesting complexes features speedups analogous to those found in quantum algorithms. Here we compare the dynamics in these light-harvesting systems to the dynamics of quantum walks, in order to elucidate the limits of such quantum speedups. For the Fenna–Matthews–Olson complex of green sulfur bacteria, we show that while there is indeed speedup at short times, this is short lived (70 fs) despite longer-lived (ps) quantum coherence. Remarkably, this timescale is independent of the details of the decoherence model. More generally, we show that the distinguishing features of light-harvesting complexes not only limit the extent of quantum speedup but also reduce the rates of diffusive transport. These results suggest that quantum coherent effects in biological systems are optimized for efficiency or robustness rather than the more elusive goal of quantum speedup.


Physical Review E | 2012

Spatial propagation of excitonic coherence enables ratcheted energy transfer

Stephan Hoyer; Akihito Ishizaki; K. Birgitta Whaley

Experimental evidence shows that a variety of photosynthetic systems can preserve quantum beats in the process of electronic energy transfer, even at room temperature. However, whether this quantum coherence arises in vivo and whether it has any biological function have remained unclear. Here we present a theoretical model that suggests that the creation and recreation of coherence under natural conditions is ubiquitous. Our model allows us to theoretically demonstrate a mechanism for a ratchet effect enabled by quantum coherence, in a design inspired by an energy transfer pathway in the Fenna-Matthews-Olson complex of the green sulfur bacteria. This suggests a possible biological role for coherent oscillations in spatially directing energy transfer. Our results emphasize the importance of analyzing long-range energy transfer in terms of transfer between intercomplex coupling states rather than between site or exciton states.


New Journal of Physics | 2014

Realistic and verifiable coherent control of excitonic states in a light-harvesting complex

Stephan Hoyer; Filippo Caruso; Simone Montangero; Mohan Sarovar; Tommaso Calarco; Martin B. Plenio; K. Birgitta Whaley

We explore the feasibility of the coherent control of excitonic dynamics in light-harvesting complexes, analyzing the limits imposed by the open nature of these quantum systems. We establish feasible targets for phase and phase/amplitude control of the electronically excited state populations in the Fenna–Mathews–Olson (FMO) complex and analyze the robustness of this control with respect to orientational and energetic disorder, as well as the decoherence arising from coupling to the protein environment. We further present two possible routes to verification of the control target, with simulations for the FMO complex showing that steering of the excited state is experimentally verifiable either by extending excitonic coherence or by producing novel states in a pump–probe setup. Our results provide a first step toward coherent control of these complex biological quantum systems in an ultrafast spectroscopy setup.


Journal of Chemical Physics | 2013

Inverting pump-probe spectroscopy for state tomography of excitonic systems

Stephan Hoyer; K. Birgitta Whaley

We propose a two-step protocol for inverting ultrafast spectroscopy experiments on a molecular aggregate to extract the time-evolution of the excited state density matrix. The first step is a deconvolution of the experimental signal to determine a pump-dependent response function. The second step inverts this response function to obtain the quantum state of the system, given a model for how the system evolves following the probe interaction. We demonstrate this inversion analytically and numerically for a dimer model system, and evaluate the feasibility of scaling it to larger molecular aggregates such as photosynthetic protein-pigment complexes. Our scheme provides a direct alternative to the approach of determining all Hamiltonian parameters and then simulating excited state dynamics.


Physical Review Letters | 2014

Generalized master equation with non-markovian multichromophoric Förster resonance energy transfer for modular exciton densities

Seogjoo Jang; Stephan Hoyer; Graham R. Fleming; K. Birgitta Whaley


arXiv: Quantum Physics | 2013

Generalized master equation for modular exciton density transfer

Seogjoo Jang; Stephan Hoyer; Graham R. Fleming; K. Birgitta Whaley


Archive | 2011

Propagating quantum coherence for a biological advantage

Stephan Hoyer; Akihito Ishizaki; K. Birgitta Whaley


arXiv: Disordered Systems and Neural Networks | 2018

Data-driven discretization: a method for systematic coarse graining of partial differential equations.

Yohai Bar-Sinai; Stephan Hoyer; Jason Hickey; Michael P. Brenner


Bulletin of the American Physical Society | 2018

Using image Super-Resolution techniques as a coarse-graining method for physical systems

Yohai Bar-Sinai; Michael P. Brenner; Pascal Getreuer; Jason Hickey; Stephan Hoyer; Peyman Milanfar


New Journal of Physics | 2013

Coherently controlled preparation and verification of excitonic states in a light harvesting complex by ultrafast spectroscopy with shaped pulses.

Mohan Sarovar; Stephan Hoyer; Filippo Caruso; Simone Montangero; Tomaso Calarco; Martin B. Plenio; K. Birgitta Whaley

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Mohan Sarovar

University of Queensland

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Akihito Ishizaki

Graduate University for Advanced Studies

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