Stephanie Galvan

Using occupancy models to understand the distribution of an amphibian pathogen, Batrachochytrium dendrobatidis

Batrachochytrium dendrobatidis is a fungal pathogen that is receiving attention around the world for its role in amphibian declines. Study of its occurrence patterns is hampered by false negatives: the failure to detect the pathogen when it is present. Occupancy models are a useful but currently underutilized tool for analyzing detection data when the probability of detecting a species is <1. We use occupancy models to evaluate hypotheses concerning the occurrence and prevalence of B. dendrobatidis and discuss how this application differs from a conventional occupancy approach. We found that the probability of detecting the pathogen, conditional on presence of the pathogen in the anuran population, was related to amphibian development stage, day of the year, elevation, and human activities. Batrachochytrium dendrobatidis was found throughout our study area but was only estimated to occur in 53.4% of 78 populations of native amphibians and 66.4% of 40 populations of nonnative Rana catesbeiana tested. We found little evidence to support any spatial hypotheses concerning the probability that the pathogen occurs in a population, but did find evidence of some taxonomic variation. We discuss the interpretation of occupancy model parameters, when, unlike a conventional occupancy application, the number of potential samples or observations is finite.

Non-native species impacts on pond occupancy by an anuran

ABSTRACT Non-native fish and bullfrogs (Lithobates catesbeianus) are frequently cited as contributing to the decline of ranid frogs in the western United States, so we hypothesized that non-native species, habitat, or a combination of these relate to the probability of local extinction for northern red-legged frogs (Rana aurora) in Oregon, USA. We also hypothesized that the probability of colonization relates to land use, wetland size, or riparian forest. In a 5-yr study, we found no support for an effect of non-native species on northern red-legged frogs. Instead, probability of local extinction decreased with the extent of emergent vegetation and riparian forest. This finding suggests that managers consider the role of habitat when confronting non-native species problems.

Short-Term Effect of Cattle Exclosures on Columbia Spotted Frog (Rana luteiventris) Populations and Habitat in Northeastern Oregon

Abstract Livestock grazing is a common land use across the western United States, but concerns have been raised regarding its potential to affect amphibian populations. We studied the short-term effects of full and partial livestock grazing exclosures on Rana luteiventris (Columbia Spotted Frog) populations using a controlled manipulative field experiment with pre- and posttreatment data (2002–2006). Despite a significant increase in vegetation height within grazing exclosures, we did not find treatment effects for egg mass counts, larval survival, or size at metamorphosis 1–2 years following grazing exclosure installation. Water samples taken in late summer showed concentrations of nitrite, nitrate, ammonia, and orthophosphate that were low or near detection limits across all ponds and years. The results of this experiment do not support a hypothesis that limiting cattle access to breeding ponds will help conserve R. luteiventris populations in our study area. Further research is needed to evaluate regional variation and long-term effects of grazing exclosures on R. luteiventris populations.

Effect of cattle exclosures on Columbia Spotted Frog abundance

Livestock grazing is an important land use in the western USA and can have positive or negative effects on amphibians. Columbia Spotted Frog (Rana luteiventris) often use ponds that provide water for cattle. We conducted a long-term manipulative study on US Forest Service land in northeastern Oregon to determine the effects of full and partial exclosures that limited cattle access to ponds used by frogs. We found weak evidence of a short-term increase in abundance that did not differ between full and partial exclosures and that diminished with continuing exclusion of cattle. The benefit of exclosures was small relative to the overall decline in breeding numbers that we documented. This suggests that some protection can provide a short-term boost to populations.

Short-term occupancy and abundance dynamics of the Oregon spotted frog ( Rana pretiosa ) across its core range

The Oregon spotted frog (Rana pretiosa) occupies only a fraction of its original range and is listed as Threatened under the Endangered Species Act. We surveyed 93 sites in a rotating frame design (2010–13) in the Klamath and Deschutes Basins, Oregon, which encompass most of the species’ core extant range. Oregon spotted frogs are declining in abundance and probability of site occupancy. We did not find an association between the probability that Oregon spotted frogs disappear from a site (local extinction) and any of the variables hypothesized to affect Oregon spotted frog occupancy. This 4-year study provides baseline data, but the 4-year period was too short to draw firm conclusions. Further study is essential to understand how habitat changes and management practices relate to the status and trends of this species. Introduction The Oregon spotted frog (Rana pretiosa) is listed as Threatened under the Endangered Species Act (U.S. Fish and Wildlife Service, 2014) and Vulnerable on the Red List of Threatened Species (International Union for Conservation of Nature, 2013). Our understanding that this species has declined is based on its absence from portions of its range (Pearl and Hayes, 2005), but there is a lack of reliable information on trends in abundance or on the probability of site occupancy. For example, there is currently no information to suggest whether Oregon spotted frogs are still disappearing from occupied sites, if they are colonizing new sites, or if their abundance on average is increasing or decreasing. This information is essential to a basic understanding of the status and trends of this species. The current core extant range of the Oregon spotted frog is from southern British Columbia to southern Oregon. Distribution is disjunct in the northern part of the range and the species is thought to be absent from the Willamette Valley (Jones and others, 2005). The core extant range is mostly in the Deschutes and Klamath Basins of Oregon, with a few additional sites occupied near the headwaters of the Willamette and McKenzie Rivers just west of the divide from the Deschutes Basin drainage (Pearl and others, 2009) and in the northern Oregon Cascades. Hypothesized threats to Oregon spotted frog persistence are invasive species, disease, habitat changes, population isolation, and climate change. Habitat changes may result from changes in beaver (Castor canadensis) activity, management practices that enable encroachment of woody vegetation on historically open wetlands, fire and fuels management, or hydrological manipulations (Pearl and Hayes, 2005). We emphasize that there is little empirical support for any of these hypotheses and, although the species is clearly absent from portions of its historical range, there is little information on current trends.