Steven E. Schwarzbach

Effects of predation, flooding, and contamination on reproductive success of California Clapper Rails ( Rallus longirostris obsoletus ) in San Francisco Bay

Abstract We assessed the reproductive success of the California Clapper Rail (Rallus longirostris obsoletus), an endangered subspecies restricted to San Francisco Bay, and the relative importance of predation, flooding, and contaminants as factors affecting that success. Our study was conducted in six tidal marshes in the northern and southern reaches of San Francisco Bay. This assessment, conducted in four breeding seasons (1991, 1992, 1998, 1999), determined that productivity of California Clapper Rails was much reduced over the natural potential. Only 69% of clapper rail eggs whose viability could be assessed were viable. Hatchability of eggs in North Bay and South Bay marshes was 65% and 70%, respectively. Only 45% of the nests successfully hatched at least one egg. Despite mean clutch sizes of 6.7 and 6.9 in the North and South bays, respectively, clapper rails produced only 1.9 and 2.5 young per nesting attempt. Flooding was a minor factor, reducing the number of eggs available to hatch by only 2.3%. Predation on eggs was a major factor affecting nest success, reducing productivity by a third. Failed eggs were examined for abnormal development and contaminant concentrations. Contamination appeared to adversely influence California Clapper Rail reproductive success, as evidenced by deformities; embryo hemorrhaging; embryo malpositions; a depressed rate of hatchability; excess concentrations of mercury, barium, and chromium over known avian embryotoxic thresholds; and a correlation of deformities with elevated concentrations of some trace elements in eggs that failed to hatch. Mercury was the only significant contaminant common to all marshes. Efectos de la Depredación, las Inundaciones y la Contaminación sobre el Éxito Reproductivo de Rallus longirostris obsoletus en la Bahía de San Francisco

Methylmercury is the Predominant Form of Mercury in Bird Eggs: A Synthesis

Bird eggs are commonly used in mercury monitoring programs to assess methylmercury contamination and toxicity to birds. However, only 6% of >200 studies investigating mercury in bird eggs have actually measured methylmercury concentrations in eggs. Instead, studies typically measure total mercury in eggs (both organic and inorganic forms of mercury), with the explicit assumption that total mercury concentrations in eggs are a reliable proxy for methylmercury concentrations in eggs. This assumption is rarely tested, but has important implications for assessing risk of mercury to birds. We conducted a detailed assessment of this assumption by (1) collecting original data to examine the relationship between total and methylmercury in eggs of two species, and (2) reviewing the published literature on mercury concentrations in bird eggs to examine whether the percentage of total mercury in the methylmercury form differed among species. Within American avocets (Recurvirostra americana) and Forsters terns (Sterna forsteri), methylmercury concentrations were highly correlated (R(2) = 0.99) with total mercury concentrations in individual eggs (range: 0.03-7.33 μg/g fww), and the regression slope (log scale) was not different from one (m = 0.992). The mean percentage of total mercury in the methylmercury form in eggs was 97% for American avocets (n = 30 eggs), 96% for Forsters terns (n = 30 eggs), and 96% among all 22 species of birds (n = 30 estimates of species means). The percentage of total mercury in the methylmercury form ranged from 63% to 116% among individual eggs and 82% to 111% among species means, but this variation was not related to total mercury concentrations in eggs, foraging guild, nor to a species life history strategy as characterized along the precocial to altricial spectrum. Our results support the use of total mercury concentrations to estimate methylmercury concentrations in bird eggs.

Victims and vectors: highly pathogenic avian influenza H5N1 and the ecology of wild birds

The emergence of highly pathogenic avian influenza (HPAI) viruses has raised concerns about the role of wild birds in the spread and persistence of the disease. In 2005, an outbreak of the highly pathogenic subtype H5N1 killed more than 6,000 wild waterbirds at Qinghai Lake, China. Outbreaks have continued to periodically occur in wild birds at Qinghai Lake and elsewhere in Central China and Mongolia. This region has few poultry but is a major migration and breeding area for waterbirds in the Central Asian Flyway, although relatively little is known about migratory movements of different species and connectivity of their wetland habitats. The scientific debate has focused on the role of waterbirds in the epidemiology, maintenance and spread of HPAI H5N1: to what extent are they victims affected by the disease, or vectors that have a role in disease transmission? In this review, we summarise the current knowledge of wild bird involvement in the ecology of HPAI H5N1. Specifically, we present details on: (1) origin of HPAI H5N1; (2) waterbirds as LPAI reservoirs and evolution into HPAI; (3) the role of waterbirds in virus spread and persistence; (4) key biogeographic regions of outbreak; and (5) applying an ecological research perspective to studying AIVs in wild waterbirds and their ecosystems.

Concentrations and time trends of polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in aquatic bird eggs from San Francisco Bay, CA 2000-2003

Concentrations of polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) were measured in 169 avian eggs. We analyzed randomly collected eggs of two species of piscivorous birds: Caspian tern (Sterna caspia) (n=78) and Forsters tern (Sterna forsteri) (n=76). We also analyzed fail-to-hatch eggs from two species protected under the Federal Endangered Species Act of 1973, that breed in the San Francisco Bay region: the piscivorous California Least tern (Sterna antillarum brownii) (n=11) and the omnivorous California Clapper rail (Rallus longirostris obsoletus) (n=4). San Francisco Bay eggs were collected annually for four years (2000-2003), and additional 20 eggs were collected and analyzed from Grays Harbor, Washington in 2001. Geometric mean PBDE concentrations did not significantly differ in the three tern species, but concentrations in eggs from the fail to hatch California Clapper rail eggs were significantly lower than those found in the randomly collected tern eggs. Median concentrations of SigmaPBDEs in Caspian tern eggs for 2000-2003 were 2410, 4730, 3720 and 2880 ng/g lipid weight (lw), respectively, in Forsters terns 1820, 4380, 5460 and 3600 ng/g lw, respectively, and in California Least terns for 2001 and 2002 were 5060 and 5170 ng/g lw, respectively. In contrast, median SigmaPBDEs concentration in California Clapper rail eggs for 2001 was 379 ng/g lw. Five PBDEs were the major congeners found and decreased in the order BDE-47, -99, -100, -153, and -154. BDE-32, -28, -71, -66, -85, -183 were less prevalent, minor congeners, as was BDE-209, which was measured in a subset of samples. PBDE concentrations in bird eggs from San Francisco Bay were site related. There was no significant difference in PBDE concentrations in Caspian tern eggs from San Francisco Bay and Grays Harbor, WA. Average PBDE concentrations in eggs did not significantly increase over the period 2000-2003.

Endangered species management and ecosystem restoration: finding the common ground

Management actions to protect endangered species and conserve ecosystem function may not always be in precise alignment. Efforts to recover the California Ridgways Rail (Rallus obsoletus obsoletus; hereafter, California rail), a federally and state- listed species, and restoration of tidal marsh ecosystems in the San Francisco Bay estuary provide a prime example of habitat restoration that has conflicted with species conservation. On the brink of extinction from habitat loss and degradation, and non-native predators in the 1990s, California rail populations responded positively to introduction of a non-native plant, Atlantic cordgrass (Spartina alterniflora). California rail populations were in substantial decline when the non-native Spartina was initially introduced as part of efforts to recover tidal marshes. Subsequent hybridization with the native Pacific cordgrass (Spartina foliosa) boosted California rail populations by providing greater cover and increased habitat area. The hybrid cordgrass (S. alterniflora × S. foliosa) readily invaded tidal mudflats and channels, and both crowded out native tidal marsh plants and increased sediment accretion in the marsh plain. This resulted in modification of tidal marsh geomorphology, hydrology, productivity, and species composition. Our results show that denser California rail populations occur in invasive Spartina than in native Spartina in San Francisco Bay. Herbicide treatment between 2005 and 2012 removed invasive Spartina from open intertidal mud and preserved foraging habitat for shorebirds. However, removal of invasive Spartina caused substantial decreases in California rail populations. Unknown facets of California rail ecology, undesirable interim stages of tidal marsh restoration, and competing management objectives among stakeholders resulted in management planning for endangered species or ecosystem restoration that favored one goal over the other. We have examined this perceived conflict and propose strategies for moderating harmful effects of restoration while meeting the needs of both endangered species and the imperiled native marsh ecosystem.

Low Prevalence of Avian Influenza Virus in Shorebirds on the Pacific Coast of North America

Abstract The emergence of highly pathogenic avian influenza (HPAI) H5N1 has elevated concerns about wild birds as virus hosts; however, little is known about the ecological and epidemiological factors of transmission by shorebirds. Here we summarize results for 2,773 shorebirds that were live-trapped on the Pacific coast of the United States during 2006-2007 and tested for avian influenza virus using real-time reverse transcriptase-polymerase chain reaction (RT-PCR) and virus isolation. As was the case throughout North America, HPAI H5N1 was not detected in shorebirds during this interval. Contrary to other wild bird groups, most notably waterfowl, the prevalence of even low pathogenicity virus among shorebirds in our study areas in California, Washington, and Alaska was extremely low (0.5%). Virus was detected by RT-PCR from four different species, including, Dunlin (Calidris alpina; N = 3), Western Sandpiper (C. mauri; N = 8), Long-billed Dowitcher (Limnodromus scolopaceus; N = 1), and American Avocet (Recurvirostra americana; N = 1), with the detections in the latter three constituting the first published records for these birds. Based on studies in the eastern United States, we expected, but did not detect (H1 = 1.6, P = 0.21) elevated avian influenza prevalence among shorebirds during spring migration. Diagnostic tests, which were designed to evaluate testing and sampling methods, indicated poor functioning of traditional virus isolation methods and no improvement in detection likelihood by collecting oropharyngeal swabs in addition to cloacal swab samples for low pathogenicity viruses (Z1 = 0.7, P = 0.48).

Incidental Kill of Dunlin and Killdeer by Strychnine

Strychnine poisoning of 36 dunlin (Calidris alpina) and two killdeer (Charadrius vociferus) in Yolo County, California (USA) was documented from 11 to 17 December 1990. Birds were found dead on a field containing treated wheat seeds (337 μg strychnine/g seed) in postures consistent with the known physiopathology of strychnine poisoning: rapid rigor mortis, wings folded over backs, straightened toes, and fecal material extruding from vents. Five dunlin and two killdeer were necropsied, and their crop and stomach contents were analyzed by high performance liquid chromatography for the presence of strychnine. The mean (± SD) actual unabsorbed strychnine concentration per amount stomach content for the five dunlin was 110 (± 108) μg/g and for the two killdeer, 210 (± 109) μg/g. Shorebirds have not been identified previously as victims of pesticides.

Influence of water temperature on acetylcholinesterase activity in the pacific tree frog (hyla regilla)

This investigation evaluated whether acetylcholinesterase (AChE) in Pacific tree frogs (Hyla regilla) from different geographical locations was influenced by different temperatures during early aquatic life stages, independent of pesticide exposure. Tadpoles were collected from both a California coastal pond and a Sierra Nevada mountain range pond, USA. Groups of frogs from each location were raised in temperatures representative of either the Sierra Nevada (8 degrees C) or the coastal (19 degrees C) location. Metamorphs from both locations raised as tadpoles at 19 degrees C had AChE activities of 42.3 and 38.7 nm/min/mg protein, while those raised as tadpoles at 8 degrees C had activities of 26.9 and 28.2 nm/min/mg protein. A two-way analysis of variance revealed temperature to be the significant factor in determining AChE activity (F = 22.3, p < 0.001), although origin was not important (F = 0.09, p = 0.75). Interpretations regarding the influence of pesticides upon AChE activity in Pacific tree frogs must consider the influence of environmental temperature to enable cross-population comparisons.