Steven R. Manchester

The Use of Geological and Paleontological Evidence in Evaluating Plant Phylogeographic Hypotheses in the Northern Hemisphere Tertiary

Phylogeography posits that the sequence of speciation events within a clade should parallel the geographic migration and isolation of members of the clade through time. The primary historical features that govern migration and allopatry in land plants are changes in physical geography (e.g., oceans, mountains, and deserts) and in climate (e.g., moisture, temperature, and day length), features that are often interrelated. If we assume that living genera retain physiological stability through time, much as they retain the morphological features that allow their identification, then these environmental features of the geologic past may be used to test phylogeographic hypotheses of living genera based on phylogenetic analysis. The history of the climatic and geographic features of the Tertiary of the Northern Hemisphere agrees with many phylogenetically based phylogeographic hypotheses of living angiosperm genera but indicates that some hypotheses require reanalysis. While the parallel comparison of phylogenetic hypotheses and historical biogeographic evidence is in its infancy, the reciprocal illumination of the two approaches shows great promise for future application.

Rosid radiation and the rapid rise of angiosperm-dominated forests

The rosid clade (70,000 species) contains more than one-fourth of all angiosperm species and includes most lineages of extant temperate and tropical forest trees. Despite progress in elucidating relationships within the angiosperms, rosids remain the largest poorly resolved major clade; deep relationships within the rosids are particularly enigmatic. Based on parsimony and maximum likelihood (ML) analyses of separate and combined 12-gene (10 plastid genes, 2 nuclear; >18,000 bp) and plastid inverted repeat (IR; 24 genes and intervening spacers; >25,000 bp) datasets for >100 rosid species, we provide a greatly improved understanding of rosid phylogeny. Vitaceae are sister to all other rosids, which in turn form 2 large clades, each with a ML bootstrap value of 100%: (i) eurosids I (Fabidae) include the nitrogen-fixing clade, Celastrales, Huaceae, Zygophyllales, Malpighiales, and Oxalidales; and (ii) eurosids II (Malvidae) include Tapisciaceae, Brassicales, Malvales, Sapindales, Geraniales, Myrtales, Crossosomatales, and Picramniaceae. The rosid clade diversified rapidly into these major lineages, possibly over a period of <15 million years, and perhaps in as little as 4 to 5 million years. The timing of the inferred rapid radiation of rosids [108 to 91 million years ago (Mya) and 107–83 Mya for Fabidae and Malvidae, respectively] corresponds with the rapid rise of angiosperm-dominated forests and the concomitant diversification of other clades that inhabit these forests, including amphibians, ants, placental mammals, and ferns.

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

Dated molecular phylogenies are the basis for understanding species diversity and for linking changes in rates of diversification with historical events such as restructuring in developmental pathways, genome doubling, or dispersal onto a new continent. Valid fossil calibration points are essential to the accurate estimation of divergence dates, but for many groups of flowering plants fossil evidence is unavailable or limited. Arabidopsis thaliana, the primary genetic model in plant biology and the first plant to have its entire genome sequenced, belongs to one such group, the plant family Brassicaceae. Thus, the timing of A. thaliana evolution and the history of its genome have been controversial. We bring previously overlooked fossil evidence to bear on these questions and find the split between A. thaliana and Arabidopsis lyrata occurred about 13 Mya, and that the split between Arabidopsis and the Brassica complex (broccoli, cabbage, canola) occurred about 43 Mya. These estimates, which are two- to threefold older than previous estimates, indicate that gene, genomic, and developmental evolution occurred much more slowly than previously hypothesized and that Arabidopsis evolved during a period of warming rather than of cooling. We detected a 2- to 10-fold shift in species diversification rates on the branch uniting Brassicaceae with its sister families. The timing of this shift suggests a possible impact of the Cretaceous–Paleogene mass extinction on their radiation and that Brassicales codiversified with pierid butterflies that specialize on mustard-oil–producing plants.

Eastern Asian endemic seed plant genera and their paleogeographic history throughout the Northern Hemisphere.

We review the fossil history of seed plant genera that are now endemic to eastern Asia. Although the majority of eastern Asian endemic genera have no known fossil record at all, 54 genera, or about 9%, are reliably known from the fossil record. Most of these are woody (with two exceptions), and most are today either broadly East Asian, or more specifically confined to Sino‐Japanese subcategory rather than being endemic to the Sino‐Himalayan area. Of the “eastern Asian endemic” genera so far known from the fossil record, the majority formerly occurred in Europe and/or North America, indicating that eastern Asia served as a late Tertiary or Quaternary refugium for taxa. Hence, many of these genera may have originated in other parts of the Northern Hemisphere and expanded their ranges across continents and former sea barriers when tectonic and climatic conditions allowed, leading to their arrival in eastern Asia. Although clear evidence for paleoendemism is provided by the gymnosperms Amentotaxus, Cathaya, Cephalotaxus, Cunninghamia, Cryptomeria, Glyptostrobus, Ginkgo, Keteleeria, Metasequoia, Nothotsuga, Pseudolarix, Sciadopitys, and Taiwania, and the angiosperms Cercidiphyllum, Choerospondias, Corylopsis, Craigia, Cyclocarya, Davidia, Dipelta, Decaisnea, Diplopanax, Dipteronia, Emmenopterys, Eucommia, Euscaphis, Hemiptelea, Hovenia, Koelreuteria, Paulownia, Phellodendron, Platycarya, Pteroceltis, Rehderodendron, Sargentodoxa, Schizophragma, Sinomenium, Tapiscia, Tetracentron, Toricellia, Trapella, and Trochodendron, we cannot rule out the possibility that neoendemism plays an important role especially for herbaceous taxa in the present‐day flora of Asia, particularly in the Sino‐Himalayan region. In addition to reviewing paleobotanical occurrences from the literature, we document newly recognized fossil occurrences that expand the geographic and stratigraphic ranges previously known for Dipelta, Pteroceltis, and Toricellia.

Circumscription of Malvaceae (Malvales) as determined by a preliminary cladistic analysis of morphological, anatomical, palynological, and chemical characters

We report a phylogenetic analysis of “core” Malvales (Tiliaceae, Sterculiaceae, Bombacaceae, and Malvaceae) based on morphological, anatomical, palynological, and chemical features. The results of the analyses lead to the conclusion that Tiliaceae, Sterculiaceae, and Bombacaceae, as variously delimited, are paraphyletic; only the Malvaceae are likely monophyletic. The genera of “core” Malvales form a well-defined clade. Genera of “Tiliaceae” constitute the basal complex within “core” Malvales. The “Sterculiaceae” (most genera)+ “Bombacaceae” + Malvaceae form a clade on the basis of a monadelphous androecium; “Bombacaceae”+ Malvaceae also form a clade, which is diagnosable on the basis of monoloculate anthers. It is clear that the traditional classification, with its arbitrarily delimited evolutionary grades, is unsatisfactory, especially if one seeks to reflect phylogeny accurately. Thus, Malvaceae is redefined to refer to the most recent common ancestor of plants previously considered to be “Tiliaceae,” “Sterculiaceae,” “Bombacaceae,” and Malvaceae, and all of the descendants of that ancestor. This broadly circumscribed Malvaceae can be diagnosed by several presumed synapomorphies, but we draw special attention to the unusual floral nectaries that are composed of densely packed, multicellular, glandular hairs on the sepals (or less commonly on the petals or androgynophore).

Estimation of temperature and precipitation from morphological characters of dicotyledonous leaves

The utility of regression and correspondence models for deducing climate from leaf physiognomy was evaluated by the comparative application of different predictive models to the same three leaf assemblages. Mean annual temperature (MAT), mean annual precipitation (MAP), and growing season precipitation (GSP) were estimated from the morphological characteristics of samples of living leaves from two extant forests and an assemblage of fossil leaves. The extant forests are located near Gainesville, Florida, and in the Florida Keys; the fossils were collected from the Eocene Clarno Nut Beds, Oregon. Simple linear regression (SLR), multiple linear regression (MLR), and canonical correspondence analysis (CCA) were used to estimate temperature and precipitation. The SLR models used only the percentage of species having entire leaf margins as a predictor for MAT and leaf size as a predictor for MAP. The MLR models used from two to six leaf characters as predictors, and the CCA used 31 characters. In comparisons between actual and predicted values for the extant forests, errors in prediction of MAT were 0.6°-5.7°C, and errors in prediction of precipitation were 6-89 cm (=6-66%). At the Gainesville site, seven models underestimated MAT and only one overestimated it, whereas at the Keys site, all eight models overestimated MAT. Precipitation was overestimated by all four models at Gainesville, and by three of them at the Keys. The MAT estimates from the Clarno leaf assemblage ranged from 14.3° to 18.8°C, and the precipitation estimates from 227 to 363 cm for MAP and from 195 to 295 cm for GSP.

Dicotyledonous wood anatomical characters as predictors of climate

Abstract The relationships among wood anatomical characters and climate are examined for 50 wood anatomical features in floras from 37 regions in North America, South America, Africa and Malaysia. Correlations, simple regressions and multiple regressions, were used to develop models for the prediction of climate from wood anatomy. The climate variables considered were: mean annual temperature, mean annual range in temperature, cold month mean temperature, mean annual precipitation, precipitation of the driest month and length of the dry season. Good correlations were found with temperature; poorer correlations with precipitation. The climate variables, especially the temperature-related ones, were best predicted by two or more wood anatomical characters considered together. Characters that we selected to calculate climate variables are: vessels with multiple perforations; spiral thickenings present in the vessels; vessel mean tangential diameter less than 100 μm; fibers septate; rays commonly more than 10 cells wide; rays heterocellular with four or more rows of upright cells; rays storied; axial parenchyma absent or rare; marginal parenchyma present; and wood ring-porous. Models were validated on seven temperate and six tropical sites. Based on these results, a method for determining paleoclimate from fossil wood assemblages is suggested.

Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)

BackgroundThe Ampelopsis clade (Ampelopsis and its close allies) of the grape family Vitaceae contains ca. 43 species disjunctly distributed in Asia, Europe, North America, South America, Africa, and Australia, and is a rare example to study both the Northern and the Southern Hemisphere intercontinental disjunctions. We reconstruct the temporal and spatial diversification of the Ampelopsis clade to explore the evolutionary processes that have resulted in their intercontinental disjunctions in six continents.ResultsThe Bayesian molecular clock dating and the likelihood ancestral area analyses suggest that the Ampelopsis clade most likely originated in North America with its crown group dated at 41.2 Ma (95% HPD 23.4 - 61.0 Ma) in the middle Eocene. Two independent Laurasian migrations into Eurasia are inferred to have occurred in the early Miocene via the North Atlantic land bridges. The ancestor of the Southern Hemisphere lineage migrated from North America to South America in the early Oligocene. The Gondwanan-like pattern of intercontinental disjunction is best explained by two long-distance dispersals: once from South America to Africa estimated at 30.5 Ma (95% HPD 16.9 - 45.9 Ma), and the other from South America to Australia dated to 19.2 Ma (95% HPD 6.7 - 22.3 Ma).ConclusionsThe global disjunctions in the Ampelopsis clade are best explained by a diversification model of North American origin, two Laurasian migrations, one migration into South America, and two post-Gondwanan long-distance dispersals. These findings highlight the importance of both vicariance and long distance dispersal in shaping intercontinental disjunctions of flowering plants.

Seed morphology of modern and fossil Ampelocissus (Vitaceae) and implications for phytogeography.

Seeds are useful in distinguishing among extant genera of Vitaceae and provide a good basis for interpretation of fossil remains in reconstructing the evolutionary and phytogeographic history of this putatively basal Rosid family. Seeds of Ampelocissus s.l. including Pterisanthes and Nothocissus are distinguished from those of all other vitaceous genera by long, parallel ventral infolds and a centrally positioned oval chalazal scar. Principal component analysis facilitates recognition of four Ampelocissus s.l. seed morphotypes differentiated by dorsiventral thickness, width of ventral infolds, chalazal depth, and degree of dorsal surface rugosity. While these intergrade, their end-member morphologies are distinctive and coincide well with inflorescence morphology, extant geographic distribution, and ecology. Seven fossil morphospecies are recognized. Ampelocissus parvisemina sp. n. (Paleocene of North Dakota; Eocene of Oregon) and A. auriforma Manchester (Eocene of Oregon) resemble extant Central American species; A. bravoi Berry (Eocene of Peru) is similar to one group of Old World extant species; and A. parachandleri sp. n. (Eocene of Oregon) and the three European fossil species A. chandleri (Kirchheimer) comb. n., A. lobatum (Chandler) comb. n., and A. wildei sp. n. (Eocene to Miocene) resemble another group of extant Old World Ampelocissus. All these fossils occur outside the present geographic range of the genus, reflecting warmer climates and former intercontinental links.

An extinct genus with affinities to extant Davidia and Camptotheca (Cornales) from the Paleocene of North America and eastern Asia

A new genus of Cornales is recognized based on infructescences and foliage from the Paleocene of Wyoming, Montana, and North Dakota in the United States; southern Alberta, Canada; Heilongjiang, northeastern China; and Kamchatka and the Koryak Upland, northeastern Russia. Amersinia obtrullata gen. et sp. nov. has globose to ellipsoid infructescences with four or five basal deciduous bracts and numerous obtrullate, trilocular fruits with epigynous calyces. Each locule bears one seed and has a dorsal germination valve near the apex. The infructescences and fruits show many similarities to those of extant Camptotheca, but the extant genus is distinguished by only one or two locules and the absence of infructescence bracts. Fossil leaves previously assigned to “Viburnum” cupanioides (Newberry) Brown, Viburnum kingiensis Chelebaeva, and Viburnum pseudoantiquum Golovneva are transferred to the extinct foliage genus Beringiaphyllum gen. nov. They are distinguished from Viburnum by their long petioles and compare favorably to the leaves of extant Davidia. The fossil leaves are elliptical to ovate with pinnate secondary veins, percurrent tertiary veins, and obtuse teeth. Beringiaphyllum leaves and Amersinia fruits are considered likely to represent a single extinct genus because of their shared cornalean affinity and co‐occurrence at numerous sites both in North America and Asia. Although the leaves share more characters with Davidia, the Amersinia fruits share more characters with Camptotheca. The existence of Amersinia and Beringiaphyllum both in Asia and North America, together with their absence or rarity in the Paleogene of Europe, indicates that this plant probably dispersed across Beringia in the late Cretaceous or early Tertiary.