Subhadeep Basu

A catenated strut in a catenated metal-organic framework

Mechanically interlocked molecules (MIMs), in the form of donor–acceptor [2]catenane-containing struts of exceptional length, have been incorporated into a three-dimensional catenated metal–organic framework (MOF) at precise locations and with uniform relative orientations. Catenation is expressed simultaneously within the struts and the framework.

Syntheses and dynamics of donor-acceptor [2]catenanes in water

A subset of mechanically interlocked molecules, namely, donor-acceptor [2]catenanes, have been produced in aqueous solutions in good yields from readily available precursors. The catenations are templated by strong hydrophobic and [π···π] stacking interactions, which serve to assemble the corresponding supramolecular precursors, prior to postassembly covalent modification. Dynamic (1)H NMR spectroscopic investigations performed on one of these [2]catenanes reveal that the pirouetting motion of the butadiyne-triethylene glycol chain occurs with a dramatically lower activation enthalpy, yet with a much higher negative activation entropy in water, compared to organic solvents. The preparations of mechanically interlocked molecules in water constitute the basis for the future development of complex functional molecular machinery in aqueous environments.

Enabling tetracationic cyclophane production by trading templates

The time taken to produce the ubiquitous and promiscuous receptor, which has become known as the little “blue box”, has been halved as a result of using a pH-responsive derivative of 1,5-diaminonaphthalene to displace the template employed during its synthesis. The fact that this surrogate trades places within the cavity of the “blue box” is the key to the time-saving for the simple reason that it leaves the lock, so-to-speak, as soon as it becomes protonated by a strong acid. During the subsequent full characterisation of the “blue box”, it was discovered that the tetracationic cyclophane exists at least in two different polymorphs in the solid state.

Electrostatic Barriers in Rotaxanes and Pseudorotaxanes

The ability to control the kinetic barriers governing the relative motions of the components in mechanically interlocked molecules is important for future applications of these compounds in molecular electronic devices. In this Full Paper, we demonstrate that bipyridinium (BIPY(2+)) dications fulfill the role as effective electrostatic barriers for controlling the shuttling and threading behavior for rotaxanes and pseudorotaxanes in aqueous environments. A degenerate [2]rotaxane, composed of two 1,5-dioxynaphthalene (DNP) units flanking a central BIPY(2+) unit in the dumbbell component and encircled by the cyclobis(paraquat-p-phenylene) (CBPQT(4+)) tetracationic cyclophane, has been synthesized employing a threading-followed-by-stoppering approach. Variable-temperature (1)H NMR spectroscopy reveals that the barrier to shuttling of the CBPQT(4+) ring over the central BIPY(2+) unit is in excess of 17 kcal mol(-1) at 343 K. Further information about the nature of the BIPY(2+) unit as an electrostatic barrier was gleaned from related supramolecular systems, utilizing two threads composed of either two DNP units flanking a central BIPY(2+) moiety or a central DNP unit flanked by a BIPY(2+) moiety. The threading and dethreading processes of the CBPQT(4+) ring with these compounds, which were investigated by spectrophotometric techniques, reveal that the BIPY(2+) unit is responsible for affecting both the thermodynamics and kinetics of pseudorotaxane formation by means of an intramolecular self-folding (through donor-acceptor interactions with the DNP unit), in addition to Coulombic repulsion. In particular, the free energy barrier to threading (ΔG(f)(++)) of the CBPQT(4+) for the case of the thread composed of a DNP flanked by two BIPY(2+) units was found to be as high as 21.7 kcal mol(-1) at room temperature. These results demonstrate that we can effectively employ the BIPY(2+) unit to serve as electrostatic barriers in water in order to gain control over the motions of the CBPQT(4+) ring in both mechanically interlocked and supramolecular systems.

Donor–Acceptor Oligorotaxanes Made to Order

Five donor-acceptor oligorotaxanes made up of dumbbells composed of tetraethylene glycol chains, interspersed with three and five 1,5-dioxynaphthalene units, and terminated by 2,6-diisopropylphenoxy stoppers, have been prepared by the threading of discrete numbers of cyclobis(paraquat-p-phenylene) rings, followed by a kinetically controlled stoppering protocol that relies on click chemistry. The well-known copper(I)-catalyzed alkyne-azide cycloaddition between azide functions placed at the ends of the polyether chains and alkyne-bearing stopper precursors was employed during the final kinetically controlled template-directed synthesis of the five oligorotaxanes, which were characterized subsequently by (1)H NMR spectroscopy at low temperature (233 K) in deuterated acetonitrile. The secondary structures, as well as the conformations, of the five oligorotaxanes were unraveled by spectroscopic comparison with the dumbbell and ring components. By focusing attention on the changes in chemical shifts of some key probe protons, obtained from a wide range of low-temperature spectra, a picture emerges of a high degree of folding within the thread protons of the dumbbells of four of the five oligorotaxanes-the fifth oligorotaxane represents a control compound in effect-brought about by a combination of C-H···O and π-π stacking interactions between the π-electron-deficient bipyridinium units in the rings and the π-electron-rich 1,5-dioxynaphthalene units and polyether chains in the dumbbells. The secondary structures of a foldamer-like nature have received further support from a solid-state superstructure of a related [3]pseudorotaxane and density functional calculations performed thereon.

A tristable [2]pseudo[2]rotaxane

A strategy towards increasing the lifetime of the metastable state of a [2]rotaxane incorporating tetrathiafulvalene, 1,5-dioxynaphthalene and bipyridinium (BIPY(2+)) is presented. Incorporation of BIPY(2+) served multiple roles as an electrostatic barrier to relaxation, a supramolecular recognition site for bis-1,5-dioxynaphthalene[38]crown-10 macrocycle, and upon reduction a recognition site for the mechanically bonded cyclobis(paraquat-p-phenylene) ring.

Isolation by crystallization of translational isomers of a bistable donor-acceptor [2]catenane

The template-directed synthesis of a bistable donor-acceptor [2]catenane wherein both translational isomers—one in which a tetrathiafulvalene unit in a mechanically interlocked crown ether occupies the cavity of a cyclobis(paraquat-p-phenylene) ring and the other in which a 1,5-dioxynaphthalene unit in the crown ether resides inside the cavity of the tetracationic cyclophane—exist in equilibrium in solution, has led to the isolation and separation by hand picking of single crystals colored red and green, respectively. These two crystalline co-conformations have been characterized separately at both the molecular and supramolecular levels, and also by dynamic NMR spectroscopy in solution where there is compelling evidence that the mechanically interlocked molecules are present as a complex mixture of translational, configurational, and conformational isomers wherein the isomerization is best described as being a highly dynamic and adaptable phenomenon.

Rapid thermally assisted donor–acceptor catenation

Charged donor-acceptor [2]catenanes containing cyclobis(paraquat-p-phenylene) as the ring component can be synthesised in yields of up to 88% in under one hour by heating two precursors in the presence of macrocyclic polyether templates in N,N-dimethylformamide at 80 °C.