Subhas Samanta

Photoswitching Azo Compounds in Vivo with Red Light

The photoisomerization of azobenzenes provides a general means for the photocontrol of molecular structure and function. For applications in vivo, however, the wavelength of irradiation required for trans-to-cis isomerization of azobenzenes is critical since UV and most visible wavelengths are strongly scattered by cells and tissues. We report here that azobenzene compounds in which all four positions ortho to the azo group are substituted with bulky electron-rich substituents can be effectively isomerized with red light (630-660 nm), a wavelength range that is orders of magnitude more penetrating through tissue than other parts of the visible spectrum. When the ortho substituent is chloro, the compounds also exhibit stability to reduction by glutathione, enabling their use in intracellular environments in vivo.

Bidirectional photocontrol of peptide conformation with a bridged azobenzene derivative.

It goes both ways: A thiol-reactive cross-linker based on a bridged azobenzene derivative permits photoreversible control of peptide conformation on irradiation with violet (407 nm) and green (500-550 nm) light (see picture) through isomerization of the cross-linker. The large separation of the absorbance bands of the cis (yellow) and trans (red) isomers enables complete bidirectional photoswitching.

Robust Visible Light Photoswitching with Ortho-Thiol Substituted Azobenzenes

Introduction of S-ethyl groups in all four ortho positions of azobenzene prevents reduction of the azo group by intracellular glutathione, while enhancing the absorptivity to ~10,000 M(-1) cm(-1) in the blue and green regions of the visible spectrum. cis-to-trans isomerization occurs thermally on the minutes timescale. Further, this substitution pattern permits switching with red light, a color that is more penetrating through biological tissues than other parts of the visible spectrum.

Photoswitching of ortho‐Substituted Azonium Ions by Red Light in Whole Blood

Photo-control using red light is highly desirable for biological applications since red wavelengths are the only part of the visible spectrum that can effectively penetrate tissue.[1] Efforts to develop optogenetic and optochemical genetic tools that are red-shifted range from exploring natural biodiversity in the search for red-shifted opsins[2] to the conjugation of chemical photoswitches to upconverting nanoparticles.[3] We recently reported that azobenzenes with bulky polar substituents in all four positions ortho to the azo group could undergo red-light driven photoisomerization.[4] However, the compounds require intense red light or long irradiation times to reach the photostationary state because the absorption coefficients for wavelengths >600 nm are very small.[4]

Reversible Photocontrol of Peptide Conformation with a Rhodopsin-like Photoswitch

Reversible photocontrol of biomolecules requires chromophores that can efficiently undergo large conformational changes upon exposure to wavelengths of light that are compatible with living systems. We designed a benzylidene-pyrroline chromophore that mimics the Schiff base of rhodopsin and can be used to introduce light-switchable intramolecular cross-links in peptides and proteins. This new class of photoswitch undergoes an ~10 Å change in end-to-end distance upon isomerization and can be used to control the conformation of a target peptide efficiently and reversibly using, alternately, violet (400 nm) and blue (446 nm) light.

Helicity as a Steric Force: Stabilization and Helicity-Dependent Reversion of Colored o-Quinonoid Intermediates of Helical Chromenes

Photolysis of regioisomeric helical chromenes 1 and 2 leads to colored reactive intermediates. While the latter generally decay quite rapidly, they are found to be longer lived in 1 and highly persistent in 2. The remarkable stability of the otherwise fleeting transient in 2 allowed isolation and structural characterization by X-ray crystallography. The structural analyses revealed that steric force inherent to the helical scaffold is the origin of stability as well as differentiation in the persistence of the intermediates of 1 and 2 (1Q and 2Q). The structure further shows that diphenylvinyl moiety in the TT isomer of 2Q gets splayed over the helical scaffold such that it is fraught with a huge steric strain to undergo required bond rotations to regenerate the precursor chromene. Otherwise, reversion of 2Q was found to occur at higher temperatures. Aazahelical chromenes 3 and 4 with varying magnitudes of helicity were designed in pursuit of o-quinonoid intermediates with graded activation barriers. Their photogenerated intermediates 3Q and 4Q were also isolated and structurally characterized. The activation barriers for thermal reversion of 2Q-4Q, as determined from Arrhenius and Eyring plots, are found to correlate nicely with the helical turn, which decisively determines the steric force. The exploitation of helicity is thus demonstrated to develop a novel set of photoresponsive helicenes 2-4 that lead to colored intermediates exhibiting graded stability. It is further shown that the photochromism of 2-4 in conjunction with response of 2Q-4Q to external stimuli (acid, heat, and visible radiation) permits development of molecular logic gates with INHIBIT function.

Modulation of Spectrokinetic Properties of o-Quinonoid Reactive Intermediates by Electronic Factors: Time-Resolved Laser Flash and Steady-State Photolysis Investigations of Photochromic 6- and 7-Arylchromenes

A ready synthetic accessibility of a series of 6- and 7-arylchromenes via Pd(0)-catalyzed Suzuki coupling protocol has permitted a comprehensive investigation of the thermal decay behavior of a broad set of photogenerated o-quinonoid reactive intermediates. It is shown that substantial mesomeric effect between the benzopyran nucleus and the aryl ring at C6 or C7 position of the former renders significant absorption beyond 350 nm such that they are readily photoactivated to yield colored o-quinonoid intermediates. The absorption spectra of the latter are found to be strongly influenced by the substituents on C2-, C6- and C7-aryl rings; indeed the colored absorptions can be conveniently tuned by appropriate choice of substituents. The thermal decay (bleaching phenomenon), which is important from the point of view of their application in ophthalmic lenses, was investigated in each case by micros-ms as well as real-time absorption spectroscopy. By careful experimentation, we have extracted the decay rate constants for Z,E and E,E o-quinonoid isomers of all 6- and 7-arylchromenes in an attempt to establish a correlation between the electronic attributes with their thermokinetic behavior. From a combined analysis of micros-ms (laser flash) and real-time kinetic data, it is shown that the colored o-quinonoid intermediates decay faster when the C2-aryl and C6-/C7-aryl rings contain electron-donating and electron-accepting groups, respectively. In the same vein, the decay was found to occur slowly for the reversed scenario, while intermediate decay rates are observed when both substituents are electron-donating. Thus, any substituent on the C2-aryl ring that contributes mesomerically to the development of charge on the quinonoid oxygen, and any substituent on the C6-/C7-aryl ring that exerts -I effect appear to expedite thermal decay. Furthermore, evidence is obtained for the first time from mus time-resolved laser-flash spectroscopy for the formation and characterization of the trans,cis (E,Z) o-quinonoid isomer, which has heretofore eluded spectral characterization in the photochromic phenomena of pyrans.

Oxidative ortho-C-N Fusion of Aniline by OSO4. Isolation, Characterization of Oxo-Amido Osmium(VI) Complexes, and their Catalytic Activities for Oxidative C-C Bond Cleavage of Unsaturated Hydrocarbons

In an unusual reaction of osmium(VIII) oxide with p-substituted aromatic amines (X-C(6)H(4)-NH(2), where X = Me, H, Cl) in heptane afforded the brown osmium(VI)-oxo complexes [OsO(L)(2)] (1a-c, L = N-aryl-1,2-arylenediamide) in moderate yields. The ligand L is formed in situ via oxidative ortho-C-N fusion of arylamines. The reaction occurs in an inert atmosphere, and a part of Os(VIII) is used up for the oxidation of aromatic amine. Single crystal X-ray structure of a representative complex 1a is solved. The structural analysis has authenticated the ortho-C-N fusion of ArNH(2) resulting in formation of the diamide ligand, L. The complex as a whole is penta-coordinated, and the coordination sphere has a distorted square pyramidal geometry (tau = 0.26). A similar reaction of osmium(VIII) oxide with the preformed N-phenyl-1,2-phenelene diamine produced the complex 1a in nearly quantitative yield. The substituted phenazine, 5-phenyl-3-phenylimino-3,5-dihydro-phenazine-2-ylamine, is obtained as a byproduct of the latter reaction. The complexes, 1a-c, can be reduced in a reversible one-electron step, as probed by cyclic voltammetry. The one electron reduced paramagnetic Os(V) intermediate is, however, Electron Paramagnetic Resonance (EPR) silent. Solution spectra of the osmium complexes show several multiple transitions in the UV-vis region. Density functional theory calculations were employed to confirm the structural features and to support the spectroscopic assignments. The complex 1a catalyzes oxidation of a wide variety of unsaturated hydrocarbons like alkenes, alkynes, and aldehydes to the corresponding carboxylic acids in the presence of tert-butylhydroperoxide (TBHP) efficiently at room temperature.

Influence of (2,3,4,5,6-Pentamethyl/phenyl)phenyl Scaffold: Stereoelectronic Control of the Persistence of o-Quinonoid Reactive Intermediates of Photochromic Chromenes †

Regioisomeric photochromic chromenes 1Ch-6Ch substituted with the (2,3,4,5,6-pentamethyl/phenyl)phenyl scaffold were designed to delve into stereoelectronic effects on the spectrokinetic properties of photogenerated o-quinonoid reactive intermediates. While the latter derived from 1Ch, 2Ch, 4Ch, and 5Ch were found to exhibit notable persistence, those from 3Ch and 6Ch were found to revert rapidly at room temperature to preclude visible coloration. The intermediates of 1Ch and 2Ch were found to be marginally more stable than those of 4Ch and 5Ch, respectively, attesting to the possibility of toroidal conjugation via C(ipso)-π orbitals in the former. The rapid reversion of the intermediates of 3Ch and 6Ch is attributed to unfavorable electronic repulsion between the phenyl ring of the (pentamethyl/phenyl)phenyl scaffold and one of the lone-pairs of the o-quinonoid oxygen. Thus, the regioisomerically substituted photochromic chromenes are shown to permit control of the reversion, very rapidly as well as slowly, of the colored o-quinonoid intermediates through operation of stereoelectronic effects differently.

Introducing a New Azoaromatic Pincer Ligand. Isolation and Characterization of Redox Events in Its Ferrous Complexes

The isolation and complete characterization of a new bis-azoaromatic ligand, 2,6-bis(phenylazo)pyridine (L), are described, and its coordination to iron(II) is reported. A pseudo-trigonal-bipyramidal mixed-ligand complex of iron(II), FeLCl2 (1), and a homoleptic octahedral iron complex, mer-[Fe(L)2]ClO4 [2]ClO4, have been synthesized from L and FeCl2 or hydrated Fe(ClO4)2, respectively, in boiling methanol. Determination of the X-ray crystallographic structure together with magnetic data (≈ 5.06 μB) and Mössbauer analysis of 1 established a high-spin Fe(II) complex ligated by one neutral 2,6-bis(phenylazo)pyridine ligand. The X-ray crystallographic structure (showing dN-N > 1.30 Å), Mössbauer data, and magnetic susceptibility measurements (≈ 1.65 μB) as well as a nearly isotropic EPR signal with only a small metal contribution at g = 1.968, on the other hand, suggest a low-spin Fe(II) complex with a one-electron-reduced radical ligand coordination in [2]ClO4. The ligand and the metal complexes have well-behaved redox properties, with the ligand(s) functioning as the redox-active site(s) responsible for redox events. The uncoordinated ligand, L, displays a reversible one-electron wave at -1.07 V and a quasi-reversible wave at -1.39 V. The partially reduced ligand L(•-) shows a single-line EPR spectrum at g = 2.001, signifying that L(•-) is a free radical. While complex 1 shows a reversible reduction at -0.08 V and an irreversible cathodic response at -0.98 V, the bis-chelate [2]ClO4 undergoes a reversible one-electron oxidation at 0.54 V and three successive reversible one-electron reductions at -0.18, -0.88, and -1.2 V, all occurring at the ligands without affecting the metal ion oxidation state. The electronic structures of the parent monocationic complex [2](+) and its oxidized and reduced forms, generated by exhaustive electrolyses, have been characterized by using a host of spectroscopic techniques and density functional theory (DFT). It is found that the 2,6-bis(phenylazo)pyridine ligand (L) is truly redox noninnocent and is capable of coordinating transition-metal centers in its neutral ([L](0)), monoanionic monoradical ([L(•)](-)), and dianionic diradical ([L(••)](2-)) forms.