Subhash Basu

Nano-biosensor development for bacterial detection during human kidney infection: use of glycoconjugate-specific antibody-bound gold NanoWire arrays (GNWA).

Infectious disease, commonly caused by bacterial pathogens, is now the world’s leading cause of premature death and third overall cause behind cardiovascular disease and cancer. Urinary Tract Infection (UTI), caused by E. coli bacteria, is a very common bacterial infection, a majority in women (85%) and may result in severe kidney failure if not detected quickly. Among hundreds of strains the bacteria, E. coli 0157:H7, is emerging as the most aggressive one because of its capability to produce a toxin causing hemolytic uremic syndrome (HUS) resulting in death, especially in children. In the present study, a project has been undertaken for developing a rapid method for UTI detection in very low bacteria concentration, applying current knowledge of nano-technology. Experiments have been designed for the development of biosensors using nano-fabricated structures coated with elements such as gold that have affinity for biomolecules. A biosensor is a device in which a biological sensing element is either intimately connected to or integrated within a transducer. The basic principle for the detection procedure of the infection is partly based on the enzyme-linked immunosorbent assay system. Anti-E. coli antibody-bound Gold Nanowire Arrays (GNWA) prepared on anodized porous alumina template is used for the primary step followed by binding of the bacteria containing specimen. An alkaline phosphatase-conjugated second antibody is then added to the system and the resultant binding determined by both electrochemical and optical measurements. Various kinds of GNWA templates were used in order to determine the one with the best affinity for antibody binding. In addition, an efficient method for enhanced antibody binding has been developed with the covalent immobilization of an organic linker Dithiobissuccinimidylundecanoate (DSU) on the GNWA surface. Studies have also been conducted to optimize the antibody-binding conditions to the linker-attached GNWA surfaces for their ability to detect bacteria in clinical concentrations. Published in 2004.

Changes in glycolipid glycosyltransferases and glutamate decarboxylase and their relationship to differentiation in neuroblastoma cells

Abstract Glycolipid glycosyltransferase activities involved in the biosynthesis in vitro of neutral and acidic glycosphingolipids were measured in C-1300 tumors and cloned cells derived therefrom. An adrenergic clone (NIE-115) was grown in tissue culture in the presence of dibutyryl cyclic AMP and the levels of glycosyltransferases were measured before and after differentiation. Increased activities of galactosyltransferases and sialyl-transferases with a concomitant increase in glutamate decarboxylase activity (the enzyme that catalyzes the synthesis of an inhibitory neurotransmitter, γ-aminobutyric acid) were observed.

The measurement of glutamate decarboxylase activity in brain tissues by a simple microradiometric method

Abstract A simple method was developed for the assay of l -glutamate decarboxylase (GAD) in brain homogenate and subcellular fractions. In a dual tube assay system, the incubation mixture (0.1 ml) was placed in an inner disposable culture tube (6 × 50 mm) which was then placed in an outer reusable culture tube (10 × 75 mm) and sealed with a serum cap. The procedure utilizes absorption of 14CO2 (released from [1-14C] l -glutamate) on a Hyamine hydroxide spotted Whatman 3 MM chromatographic paper strip (5 × 40 mm) which is then counted with a MiniVial containing 5 ml of toluene scintillation solution. Only very small tissue samples (0.05–0.4 mg of protein) and minimum manipulations are necessary. The assay method reported here could be used for the measurement of any decarboxylase-catalyzed reaction, provided that suitable carboxyl labeled substrates are employed.

Biosynthesis of globoside and Forssman-related glycosphingolipid in mouse adrenal Y-1 tumor cells*

Summary The activities of four glycolipid glycosyltransferases involved in the biosynthesis in vitro of globoside and Forssman hapten were measured in normal mouse adrenal tissues, Y-1 mouse adrenal tumor cells, and tumors derived therefrom. These enzyme activities, found in Golgi-rich membranes isolated on a sucrose density gradient, were higher in the tumor cell cultures than in normal mouse adrenal tissue. The ratio between long chain oligoglycosylceramides and short chain glycosphingolipids was higher in the case of Y-l-K cells treated with dibutyryl cAMP than in concanavalin A, colchicine treated, or untreated control cells in culture.

Specific 14C labeling of sialic acid and N-acetylhexosamine residues of glycosphingolipids after hydrazinolysis.

The sialic acid and the amino sugar moieties of glycosphinoglipids were N -deacetylated (or N -deglycolylated) by hydrazinolysis without considerable (5%) N -deacylation of ceramide residue. The total recoveries of various glycosphingolipids after hydrazinolysis were globoside, 52%; neolactopentaosylceramide, 46%; sialyl-lactosylceramide, 50%; N -glycolylneuraminyl-neolactotetraosylceramide, 36%; and GM1, 30%. The N -deacetylated glycosphingolipids were re- N -acetylated quantitatively (96%) with [1- 14 C]acetic anhydride to obtain [ acetyl - 14 C]glycosphingolipids of high specific activity.

Lectin and cholera toxin binding to guinea pig tumor (104C1) cell surfaces before and after glycosphingolipid incorporation

Abstract 125I-Labeled Dolichos biflorus lectin and cholera toxin were used as probes for identification of Forssman- and GM1-type receptor sites on guinea pig tumor (104C1) cell surfaces. Increased binding of 125I-labeled lectin and toxin to 104C1 cell surfaces was observed after the cells were treated with exogenous Forssman glycosphingolipid and GM1 ganglioside, respectively. Biosynthesis in vitro of these two glycosphingolipids from their precursor molecules was established using a membrane preparation isolated from confluent cultures of guinea pig tumor 104C1 cells.

Apoptosis of human carcinoma cells in the presence of inhibitors of glycosphingolipid biosynthesis: I. Treatment of Colo-205 and SKBR3 cells with isomers of PDMP and PPMP

Apoptosis, or programmed cell death, plays an important role in many physiological and diseased conditions. Induction of apoptosis in cancer cells by anti-cancer drugs and biosynthetic inhibitors of cells surface glycolipids in the human colon carcinoma cells (Colo-205) are of interest in recent years. In our present studies, we have employed different stereoisomers of PPMP and PDMP (inhibit GlcT-glycosyltransferase (GlcT-GLT)) to initiate apoptosis in Colo-205 cells grown in culture in the presence of 3H-TdR and 3H/or 14C-L-Serine. Our analysis showed that the above reagents (between 1 to 20 μM) initiated apoptosis with induction of Caspase-3 activities and phenotypic morphological changes in a dose-dependent manner. We have observed an increase of radioactive ceramide formation in the presence of a low concentration (1–4 μM) of these reagents in these cell lines. However, high concentrations (4–20 μM) inhibited incorporation of radioactive serine in the higher glycolipids. Colo-205 cells were treated with L-threo-PPMP (0–20 μM) and activities of different GSL: GLTs were estimated in total Golgi-pellets. The cells contained high activity of GalT-4 (UDP-Gal: LcOse3Cer β1-4galactosyltransferase), whereas negligible activity of GalT-3 (UDP-Gal: GM2 β1-3galactosyltransferase) or GM2-synthase activity of the ganglioside pathway was detected. Previously, GLTs involved in the biosynthetic pathway of SA-Lex formation had been detected in these colon carcinoma (or Colo-205) cells (Basu M et al. Glycobiology 1, 527–35 (1991)). However, during progression of apoptosis in Colo-205 cells with increasing concentrations of L-PPMP, the GalT-4 activity was decreased significantly. These changes in the specific activity of GalT-4 in the total Golgi-membranes could be the resultant of decreased gene expression of the enzyme. Published in 2004.

Apoptosis of human breast carcinoma cells in the presence of cis-platin and L-/D-PPMP: IV. Modulation of replication complexes and glycolipid: Glycosyltransferases

Apoptosis of human breast carcinoma cells (SKBR-3, MCF-7, and MDA-468) has been observed after treatment of these cells with anti-cancer drug cis-platin and glycosphingolipid biosynthesis inhibitor L- and D-PPMP, respectively. These drugs initiated apoptosis in a dose-dependent manner as measured by phenotypic morphological changes, by binding of a fluorescent phophatidyl serine-specific dye (PSS-380) onto the outer leaflet of the cell membranes, and by activation of caspases, −3, −8, and −9. It was observed that in two hours very little apoptotic process had started but predominant biochemical changes occurred after 6 h. DNA degradation started after 24 hours of drug treatment. However, very little is known about the stability of the ‘`Replication Complexes’’ during the apoptotic process. DNA helicases are motor proteins that catalyze the melting of genomic DNA during its replication, repair, and recombination processes. Previously, DNA helicase-III was characterized as a component of the replication complexes isolated from embryonic chicken brains as well as breast and colon carcinoma cells. Helicase activities were measured by a novel method (ROME assay), and DNA polymerase-α activities were determined by regular chain extension of the nicked ACT-DNA, by determining values obtained from +/− aphidicolin-treated incubation mixtures. In all three breast carcinoma cell lines, a common trend was observed: a decrease of activities of DNA polymerase-α and Helicase III. A sharp decrease of activities of the glycolipid sialyltransferases: SAT-2 (CMP-NeuAc; GD3 α2-8 sialyltransferase) and SAT-4 (CMP-NeuAc: GM1a α2-3 sialyltransferase) was observed in the apoptotic carcinoma cells treated with L-PPMP compared with cis-platin.

Activities of glycolipid glycosyltransferases and sialidases during the early development of Xenopus laevis

The activities of glycosyltransferases and sialidases, together with the ganglioside content and distribution, have been extensively studied in mammals, while the informations on tissues of other animals, including amphibian, are scarce. In this paper we present data on the activities of SAT-1, SAT-2, SAT-4, SAT-5, GlcNAcT-1, GalNAcT-1, GalT-6, and sialidases studied in Xenopus laevis embryos at different stages of development. The highest activity was found at days 4 and 5 of embryogenesis for glycosyltransferases and sialidases respectively; a tentative correlation between the in vitro activity of these enzymes and the content of neutral and acidic glycolipids is discussed. (Mol Cell Biochem 166: 117-124, 1997)

Biosynthesis In Vitro of Gangliosides Containing Gg- and Lc-Cores

On the basis of our previous and present studies with embryonic chicken brain system, we have proposed stepwise biosynthesis of GD1a (Gg-series) and LD1 (Lc-series) gangliosides, starting from ceramide (Fig. 4). At least three different galactosyltransferases GalT-2 (UDP-Gal:Glc-Cer), GalT-3(UDP-Gal:GM2) and GalT-4(UDP-Gal:LcOse3-Cer) and three different sialyltransferases SAT-1(CMP-NeuAc:Lac-Cer), SAT-2(CMP-NeuAc:GM3) and SAT-3(CMP-NeuAc:nLcOse4 Cer) are involved in the biosynthesis in vitro of these gangliosides. All six of these glycosyltransferases have been solubilized using nonionic detergents. Two forms of glycolipid:galactosyltransferases (GalT-3 and GalT-4) have been separated by DEAE sepharose CL-6B chromatography from solubilized supernatant of 11- to 13-day-old embryonic chicken brain. Using microisoelectric focusing (pH gradient 3 to 8) the galactosyltransferases (GalT-3 and GalT-4) have been separated from SAT-3. Two beta-N-acetylglucosaminyltransferases (GlcNAcT-2(UDP-GlcNAc:nLcOse4Cer(beta 1-3] and GlcNAcT-3(UDP-GlcNAc:nLcOse4Cer(beta 1-6] have also been solubilized from mouse T-lymphoma, P-1798, using Triton CF-54. These enzymes are involved in the synthesis of Ii-core gangliosides and 3H-products have been characterized by methylation studies. Further separation of these two GlcNAcTs are in progress.