T.K. James

Chapter One – Dissolved Organic Matter: Biogeochemistry, Dynamics, and Environmental Significance in Soils

Abstract Dissolved organic matter (DOM) is defined as the organic matter fraction in solution that passes through a 0.45 μm filter. Although DOM is ubiquitous in terrestrial and aquatic ecosystems, it represents only a small proportion of the total organic matter in soil. However, DOM, being the most mobile and actively cycling organic matter fraction, influences a spectrum of biogeochemical processes in the aquatic and terrestrial environments. Biological fixation of atmospheric CO 2 during photosynthesis by higher plants is the primary driver of global carbon cycle. A major portion of the carbon in organic matter in the aquatic environment is derived from the transport of carbon produced in the terrestrial environment. However, much of the terrestrially produced DOM is consumed by microbes, photo degraded, or adsorbed in soils and sediments as it passes to the ocean. The majority of DOM in terrestrial and aquatic environments is ultimately returned to atmosphere as CO 2 through microbial respiration, thereby renewing the atmospheric CO 2 reserve for photosynthesis. Dissolved organic matter plays a significant role in influencing the dynamics and interactions of nutrients and contaminants in soils and microbial functions, thereby serving as a sensitive indicator of shifts in ecological processes. This chapter aims to highlight knowledge on the production of DOM in soils under different management regimes, identify its sources and sinks, and integrate its dynamics with various soil processes. Understanding the significance of DOM in soil processes can enhance development of strategies to mitigate DOM-induced environmental impacts. This review encourages greater interactions between terrestrial and aquatic biogeochemists and ecologists, which is essential for unraveling the fundamental biogeochemical processes involved in the synthesis of DOM in terrestrial ecosystem, its subsequent transport to aquatic ecosystem, and its role in environmental sustainability, buffering of nutrients and pollutants (metal(loid)s and organics), and the net effect on the global carbon cycle.

Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume "Dipogon lignosus" (Phaseoleae) in New Zealand Soils

The South African invasive legume Dipogon lignosus (Phaseoleae) produces nodules with both determinate and indeterminate characteristics in New Zealand (NZ) soils. Ten bacterial isolates produced functional nodules on D. lignosus. The 16S ribosomal RNA (rRNA) gene sequences identified one isolate as Bradyrhizobium sp., one isolate as Rhizobium sp. and eight isolates as Burkholderia sp. The Bradyrhizobium sp. and Rhizobium sp. 16S rRNA sequences were identical to those of strains previously isolated from crop plants and may have originated from inocula used on crops. Both 16S rRNA and DNA recombinase A (recA) gene sequences placed the eight Burkholderia isolates separate from previously described Burkholderia rhizobial species. However, the isolates showed a very close relationship to Burkholderia rhizobial strains isolated from South African plants with respect to their nitrogenase iron protein (nifH), N-acyltransferase nodulation protein A (nodA) and N-acetylglucosaminyl transferase nodulation protein C (nodC) gene sequences. Gene sequences and enterobacterial repetitive intergenic consensus (ERIC) PCR and repetitive element palindromic PCR (rep-PCR) banding patterns indicated that the eight Burkholderia isolates separated into five clones of one strain and three of another. One strain was tested and shown to produce functional nodules on a range of South African plants previously reported to be nodulated by Burkholderia tuberum STM678T which was isolated from the Cape Region. Thus, evidence is strong that the Burkholderia strains isolated here originated in South Africa and were somehow transported with the plants from their native habitat to NZ. It is possible that the strains are of a new species capable of nodulating legumes.

Mechanisms of glyphosate resistance in two perennial ryegrass (Lolium perenne) populations.

BACKGROUND Perennial ryegrass (Lolium perenne) has developed resistance to glyphosate within New Zealand vineyards following many years of herbicide application. The objectives of this work were to confirm resistance within two populations obtained from affected vineyards, and to determine the mechanism of resistance to glyphosate. RESULTS Population O was confirmed to have a 25-fold resistance to glyphosate, whereas population J had a sevenfold resistance. Results of genotyping assays demonstrated a single nucleotide substitution at codon 106 of 5-enolpyruvylshikimate-3-phosphate synthase in population O but not population J. Glyphosate-resistant and glyphosate-susceptible populations did not differ in glyphosate absorption. However, in both resistant populations, much more of the absorbed (14) C-glyphosate remained in the treated leaf than occurred in the susceptible population. Significantly more glyphosate was found in the pseudostem region of susceptible plants compared with resistant plants. CONCLUSION Both target-site and non-target-site mechanisms of glyphosate resistance were found in the perennial ryegrass population with 25-fold resistance, whereas only the non-target-site mechanism of resistance was found in the population with sevenfold resistance. This is the first study of the mechanism of glyphosate resistance in perennial ryegrass.

Dissipation of the Herbicide Clopyralid in an Allophanic Soil: Laboratory and Field Studies

Soil dissipation of the herbicide clopyralid (3,6‐dichloropicolinic acid) was measured in laboratory incubations and in field plots under different management regimes. In laboratory studies, soil was spiked with commercial grade liquid formulation of clopyralid (Versatill®, 300 g a.i. L− 1 soluble concentrate) @ 0.8 µg a.i. g− 1 dry soil and the soil water content was maintained at 60% of water holding capacity of the soil. Treatments included incubation at 10°C, 20°C, 30°C, day/night cycles (25/15°C) and sterilized soil (20°C). Furthermore, a field study was conducted at the Waikato Research Orchard near Hamilton, New Zealand starting in November 2000 to measure dissipation rates of clopyralid under differing agricultural situations. The management regimes were: permanent pasture, permanent pasture shielded from direct sunlight, bare ground, and bare ground shielded from direct sunlight. Clopyralid was sprayed in dilute solution @ 600 g a.i. ha− 1 on to field plots. Herbicide residue concentrations in soil samples taken at regular intervals after application were determined by gas chromatograph with electron capture detector. The laboratory experiments showed that dissipation rate of clopyralid was markedly faster in non‐sterilized soil (20°C), with a half‐life (t1/2) of 7.3 d, than in sterilized soil (20°C) with t1/2 of 57.8 d, demonstrating the importance of micro‐organisms in the breakdown process. Higher temperatures led to more rapid dissipation of clopyralid (t1/2, 4.1 d at 30°C vs 46.2 d at 10°C). Dissipation was also faster in the day/night (25/15°C) treatment (t1/2, 5.4 d), which could be partly due to activation of soil microbes by temperature fluctuations. In the field experiment, decomposition of clopyralid was much slower in the shaded plots under pasture (t1/2, 71.5 d) and bare ground (t1/2, 23.9 d) than in the unshaded pasture (t1/2, 5.0 d) and bare ground plots (t1/2, 12.9 d). These studies suggest that environmental factors such as temperature, soil water content, shading, and different management practices would have considerable influence on rate of clopyralid dissipation.

Quick tests for detecting glyphosate-resistant Italian and perennial ryegrass

Three quick tests were evaluated for detecting glyphosate-resistant biotypes of Italian ryegrass and perennial ryegrass. Biotypes of these two species were used that were 13.4 and 7.3 times more resistant to glyphosate, respectively, than susceptible biotypes when assessed using a sprayed pot study. One assay exposed germinating seeds of resistant and susceptible populations for 8 days to different concentrations of glyphosate. Measurements of reduction in seedling root growth gave an estimate of resistance magnitude of 10.8 and 8.9 for Italian ryegrass and perennial ryegrass, respectively, similar to that from the sprayed pot study. Two other assays were tested and were able to differentiate resistant and susceptible biotypes. One measured the relative levels of shikimic acid in leaves following exposure to glyphosate; four to seven times more shikimic acid accumulated in glyphosate-susceptible populations of Italian and perennial ryegrass than in resistant populations. The other assay involved growing tillers of the plants in glyphosate solutions and the results showed that at glyphosate concentrations of 10 and 40 mg/L, the plantlets of resistant plants showed negligible visual injury and growth reduction compared with susceptible ones. Results obtained from these assays were not affected by whether the glyphosate formulation used was an isopropylamine salt or potassium salt.

Post-emergence weed control through abrasion with an approved organic fertilizer

Corn gluten meal (CGM) is an approved organic fertilizer and pre-emergence herbicide that can be manufactured in the form of grit. This grit was tested for its ability to abrade seedlings of the summer annual weedy grass, Setaria pumila, when plants were in the 1- to 5-leaf stages of growth. CGM was propelled at air pressures of 250–750 kPa at distances of 30–60 cm from the plants. Established seedlings of S. pumila were controlled more effectively when grit was applied at 500 and 750 kPa than at 250 kPa, as well as when the applicator’s nozzle was 30 cm from the plants compared to 60 cm distance. Seedling growth and dry weights were greatly reduced by exposures to grit at 60 cm and 500 kPa for 2 s or less, and seedlings were nearly completely destroyed at 30 cm distance and 750 kPa. CGM, a soft grit, was as effective for abrading seedlings as fine quartz sand, a hard grit. CGM had little pre-emergence herbicidal effect on S. pumila. Although regrowth can occur in S. pumila after abrasion by grit, the initial grit-induced stunting is sufficient to allow competing crop plants, like maize, to escape competition and suppress the weed. Consequently, CGM may be an effective form of soft grit for post-emergence abrasion of seedlings of summer annual grass weeds in organic row crops, while simultaneously supplying the crop with fertilizer.

RELATIVE INTRA-SPECIES COMPETITIVE ABILITY OF NODDING THISTLE BIOTYPES WITH VARYING RESISTANCE TO THE HERBICIDE 2,4-D

Abstract Resistance of pasture weed species to phenoxy herbicides is emerging as a potential problem in New Zealand and is especially apparent in the case of nodding thistle (Carduus nutans). We selected eight biotypes of nodding thistle known to differ in resistance to the herbicide 2,4‐D and evaluated their relative competitive abilities during vegetative growth in terms of their effects on growth of the other biotypes, growth response to the other biotypes, and growth and seedling emergence responses to pre‐established swards of perennial ryegrass (Lolium perenne). Although biotypes differed in terms of competitive ability for each of these measures, there was no detectable agreement between any pair of measures across the eight biotypes. None of the measures of competitive ability was significantly correlated with herbicide resistance across the biotypes. Our results show no clear causative relationship between competitive ability as measured in this experiment and herbicide resistance. Since resistan...

Genetic inheritance of restricted herbicide translocation in a glyphosate-resistant Lolium perenne population

ABSTRACT One of the crucial factors in the evolution of herbicide resistance in weeds is the mode of inheritance. Experiments were conducted to determine the inheritance of glyphosate resistance in a population of perennial ryegrass (Lolium perenne) caused by restricted glyphosate translocation. First, the degree of dominance of the glyphosate resistance trait was evaluated by generating first filial generation families through pair-crossing resistant with susceptible plants. Dose-response experiments showed that these first generation families had an intermediate level of glyphosate resistance compared with that of the parent plants. The phenotypic segregation of the resistance trait was then investigated by backcrossing the first generation offspring with individuals from the original susceptible population. Results obtained from spraying the resulting backcrossed families with two rates of glyphosate gave segregation values that best fitted the one-gene model. Hence, glyphosate resistance in perennial ryegrass caused by the restricted herbicide translocation trait is controlled by a single nuclear gene with incomplete dominance.

Glyphosate-resistant population of Lolium perenne loses resistance at winter temperatures

In New Zealand vineyards, evolution of glyphosate resistance in perennial ryegrass (Lolium perenne) has been reported recently, and restricted translocation of glyphosate has been found in these resistant plants. Past research with other plant species has found that restricted glyphosate translocation is temperature dependent. Glasshouse dose-response experiments were conducted with resistant perennial ryegrass at different temperatures to investigate if this population becomes susceptible to glyphosate under cooler conditions. Glyphosate-susceptible plants (population SP) grown in either warm (average of 20 °C) or cool (average of 9 °C) temperatures following treatment with several rates of glyphosate responded similarly to the herbicide regardless of temperature. In contrast, plants of population J (glyphosate resistant) were significantly more resistant than population SP to glyphosate when treated under warm conditions, but at the cooler temperature, population J was as susceptible as population SP. Thus the mechanism of resistance in population J appeared to be suppressed under cool conditions, suggesting that application of glyphosate during winter might improve control of glyphosate-resistant perennial ryegrass infestations.

Genetic diversity and nitrogen fixation of mesorhizobia symbionts of New Zealand endemic Sophora species

ABSTRACT Forty-four rhizobial isolates from New Zealand endemic Sophora species growing in natural conditions were characterised and the effectiveness of selected isolates with regard to growth and N2 fixation of different Sophora species was tested. Sequences for the housekeeping genes (concatenated recA, gln11 and rpoB) of the isolates were diverse but sequences for their symbiosis genes (nifH and nodC) were similar. Generally, isolates from the same field site showed similar housekeeping gene sequences. All isolates were Mesorhizobium. Twenty-six of the isolates aligned with Mesorhizobium species previously isolated from New Zealand native Sophora on the basis of their housekeeping gene sequences, but 18 isolates separated into two groups and a pair of isolates clearly separated from all Mesorhizobium type strains. DNA–DNA hybridisations indicated that isolates in the two groups could belong to two novel Mesorhizobium species. Rhizobial isolates with different housekeeping gene sequences (but similar symbiosis gene sequences) gave similar increases in dry weight and total N content of four Sophora species under glasshouse conditions.