Tae Hun Wang
Soonchunhyang University
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Publication
Featured researches published by Tae Hun Wang.
Comparative and Functional Genomics | 2016
Bharat Bhusan Patnaik; So Young Park; Se Won Kang; Hee-Ju Hwang; Tae Hun Wang; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Changmu Kim; Soonok Kim; Jae Bong Lee; Heon Cheon Jeong; Hong Seog Park; Yeon Soo Han; Yong Seok Lee
Vespa mandarinia found in the forests of East Asia, including Korea, occupies the highest rank in the arthropod food web within its geographical range. It serves as a source of nutrition in the form of Vespa amino acid mixture and is listed as a threatened species, although no conservation measures have been implemented. Here, we performed de novo assembly of the V. mandarinia transcriptome by Illumina HiSeq 4000 sequencing. Over 60 million raw reads and 59,184,811 clean reads were obtained. After assembly, a total of 66,837 unigenes were clustered, 40,887, 44,455, and 22,390 of which showed homologous matches against the PANM, Unigene, and KOG databases, respectively. A total of 15,675 unigenes were assigned to Gene Ontology terms, and 5,132 unigenes were mapped to 115 KEGG pathways. The zinc finger domain (C2H2-like), serine/threonine/dual specificity protein kinase domain, and RNA recognition motif domain were among the top InterProScan domains predicted for V. mandarinia sequences. Among the unigenes, we identified 534,922 cDNA simple sequence repeats as potential markers. This is the first transcriptomic analysis of the wasp V. mandarinia using Illumina HiSeq 4000. The obtained datasets should promote the search for new genes to understand the physiological attributes of this wasp.
International Journal of Molecular Sciences | 2015
Bharat Bhusan Patnaik; Hee-Ju Hwang; Se Won Kang; So Young Park; Tae Hun Wang; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Changmu Kim; Soonok Kim; Jae Bong Lee; Heon Cheon Jeong; Hong Seog Park; Yeon Soo Han; Yong Seok Lee
The Lycaenidae butterflies, Protantigius superans and Spindasis takanosis, are endangered insects in Korea known for their symbiotic association with ants. However, necessary genomic and transcriptomics data are lacking in these species, limiting conservation efforts. In this study, the P. superans and S. takanosis transcriptomes were deciphered using Illumina HiSeq 2500 sequencing. The P. superans and S. takanosis transcriptome data included a total of 254,340,693 and 245,110,582 clean reads assembled into 159,074 and 170,449 contigs and 107,950 and 121,140 unigenes, respectively. BLASTX hits (E-value of 1.0 × 10−5) against the known protein databases annotated a total of 46,754 and 51,908 transcripts for P. superans and S. takanosis. Approximately 41.25% and 38.68% of the unigenes for P. superans and S. takanosis found homologous sequences in Protostome DB (PANM-DB). BLAST2GO analysis confirmed 18,611 unigenes representing Gene Ontology (GO) terms and a total of 5259 unigenes assigned to 116 pathways for P. superans. For S. takanosis, a total of 6697 unigenes were assigned to 119 pathways using the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database. Additionally, 382,164 and 390,516 Simple Sequence Repeats (SSRs) were compiled from the unigenes of P. superans and S. takanosis, respectively. This is the first report to record new genes and their utilization for conservation of lycaenid species population and as a reference information for closely related species.
International Journal of Molecular Sciences | 2016
Se Won Kang; Bharat Bhusan Patnaik; Hee-Ju Hwang; So Young Park; Tae Hun Wang; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Hongray Howrelia Patnaik; Jae Bong Lee; Changmu Kim; Soonok Kim; Hong Seog Park; Jun Sang Lee; Yeon Soo Han; Yong Seok Lee
Aegista chejuensis and Aegista quelpartensis (Family-Bradybaenidae) are endemic to Korea, and are considered vulnerable due to declines in their population. The limited genetic resources for these species restricts the ability to prioritize conservation efforts. We sequenced the transcriptomes of these species using Illumina paired-end technology. Approximately 257 and 240 million reads were obtained and assembled into 198,531 and 230,497 unigenes for A. chejuensis and A. quelpartensis, respectively. The average and N50 unigene lengths were 735.4 and 1073 bp, respectively, for A. chejuensis, and 705.6 and 1001 bp, respectively, for A. quelpartensis. In total, 68,484 (34.5%) and 77,745 (33.73%) unigenes for A. chejuensis and A. quelpartensis, respectively, were annotated to databases. Gene Ontology terms were assigned to 23,778 (11.98%) and 26,396 (11.45) unigenes, for A. chejuensis and A. quelpartensis, respectively, while 5050 and 5838 unigenes were mapped to 117 and 124 pathways in the Kyoto Encyclopedia of Genes and Genomes database. In addition, we identified and annotated 9542 and 10,395 putative simple sequence repeats (SSRs) in unigenes from A. chejuensis and A. quelpartensis, respectively. We designed a list of PCR primers flanking the putative SSR regions. These microsatellites may be utilized for future phylogenetics and conservation initiatives.
The Korean Journal of Malacology | 2014
Se Won Kang; Hee Ju Hwang; So Young Park; Tae Hun Wang; Eun Bi Park; Tae Hee Lee; Ui Wook Hwang; Jun-Sang Lee; Hong Seog Park; Yeon Soo Han; Chae Eun Lim; Soonok Kim; Yong Seok Lee
Genes & Genomics | 2015
Ji Eun Jeong; Bharat Bhusan Patnaik; Se Won Kang; Hee-Ju Hwang; So Young Park; Tae Hun Wang; Eun Bi Park; Jae Bong Lee; Myung-Mo Nam; Yong Hun Jo; Yeon Soo Han; Jun-Sang Lee; Hong Seog Park; Yong Seok Lee
The Korean Journal of Malacology | 2014
So Young Park; Ji Eun Jeong; Hee Ju Hwang; Tae Hun Wang; Eun Bi Park; Yong Min Kim; Jun-Sang Lee; Yeon Soo Han; Seung-Ha Yang; Yong-Seok Lee
한국수산과학회 양식분과 학술대회 | 2015
So Young Park; Se Won Kang; Bharat Bhusan Patnaik; Hee-Ju Hwang; Tae Hun Wang; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Myung-Mo Nam; Chu Lee; Hong Seog Park; Jun Sang Lee; Yeon Soo Han; Yong-Seok Lee
한국수산과학회 양식분과 학술대회 | 2015
Se Won Kang; So Young Park; Bharat Bhusan Patnaik; Hee-Ju Hwang; Tae Hun Wang; Eun Bi Park; Tae Hee Lee; Ui Wook Hwang; Soonok Kim; Changmu Kim; Chae Eun Lim; Hong Seog Park; Jun Sang Lee; Yeon Soo Han
한국생물공학회 학술대회 | 2015
Ji Eun Jeong; Bharat Bhusan Patnaik; Se Won Kang; Hee-Ju Hwang; So Young Park; Tae Hun Wang; Eun Bi Park; Je Bong Lee; Myung-Mo Nam; Yong Hun Jo; Yeon Soo Han; Jun-Sang Lee; Hong Seog Park; Yong-Seok Lee
한국생물공학회 학술대회 | 2015
Bharat Bhusan Patnaik; Tae Hun Wang; Se Won Kang; Hee Ju Hwang; So Young Park; Eun Bi Park; Jong Min Chung; Dae Kwon Song; Changmu Kim; Soonok Kim; Jun Sang Lee; Yeon Soo Han; Hong Seog Park; Yong-Seok Lee
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Korea Research Institute of Bioscience and Biotechnology
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