Taisuke Sugii

A molecular-dynamics study of lipid bilayers: effects of the hydrocarbon chain length on permeability.

In this paper, we investigate the effects of the hydrocarbon chain length of lipid molecules on the permeation process of small molecules through lipid bilayers. We perform molecular-dynamics simulations using three kinds of lipid molecules with different chain length: dilauroylphosphatidylcholine, dimyristoylphosphatidylcholine, and dipalmiltoylphosphatidylcholine. Free-energy profiles of O2, CO, NO, and water molecules are calculated by means of the cavity insertion Widom method and the probability ratio method. We show that the lipid membrane with longer chains has a larger and wider energy barrier. The local diffusion coefficients of water across the bilayers are also calculated by the force autocorrelation function method and the velocity autocorrelation function method. The local diffusion coefficients in the bilayers are not altered significantly by the chain length. We estimate the permeability coefficients of water across the three membranes according to the solubility-diffusion model; we find that the water permeability decreases modestly with increasing chain length of the lipid molecules.