Takumi Akasaka

Mobility-dependent response of aquatic animal species richness to a wetland network in an agricultural landscape

Management of wetland connectivity is important for biodiversity conservation. In the modern agricultural landscape, the natural connections between floodplain wetlands have been greatly altered. Agricultural ditches and channelized streams are widely distributed in floodplains, which may contribute to the maintenance of wetland connectivity and biodiversity. To determine how these watercourse networks affect wetland biodiversity, we examined the relationship between the species richness of aquatic animals and wetland connectivity, with a special focus on species mobility. From July to August 2011, fish and aquatic insects were collected from 24 wetlands in northern Japan. To determine the degree of wetland connectivity, we assessed the relative importance of individual wetlands in maintaining the entire wetland network using two connectivity indices: hydrologic connectivity via watercourses and spatial connectivity defined as Euclidian distances between wetlands using graph theory. We found that only high mobility groups of both taxa could enhance species richness in either a hydrologic (fish) or spatial (insect) wetland network. The species richness of insects with high-flying ability was found to increase as spatial connectivity increased. Furthermore, the species richness of fish with high-swimming ability was positively influenced by hydrologic connectivity, most likely because highly mobile species were able to reach suitable habitats and migrate from source populations in a wetland network owing to their good mobility. Our findings indicate that hydrologic network is important for maintaining biodiversity as well as spatial connectivity. It is important to focus conservation efforts on key wetlands with high hydrologic and spatial connectivity in future wetland management.

An RNA-dependent RNA polymerase gene in bat genomes derived from an ancient negative-strand RNA virus

Endogenous bornavirus-like L (EBLL) elements are inheritable sequences derived from ancient bornavirus L genes that encode a viral RNA-dependent RNA polymerase (RdRp) in many eukaryotic genomes. Here, we demonstrate that bats of the genus Eptesicus have preserved for more than 11.8 million years an EBLL element named eEBLL-1, which has an intact open reading frame of 1,718 codons. The eEBLL-1 coding sequence revealed that functional motifs essential for mononegaviral RdRp activity are well conserved in the EBLL-1 genes. Genetic analyses showed that natural selection operated on eEBLL-1 during the evolution of Eptesicus. Notably, we detected efficient transcription of eEBLL-1 in tissues from Eptesicus bats. To the best of our knowledge, this study is the first report showing that the eukaryotic genome has gained a riboviral polymerase gene from an ancient virus that has the potential to encode a functional RdRp.

Large wood export regulated by the pattern and intensity of precipitation along a latitudinal gradient in the Japanese archipelago

[1] We examined the relationships between large wood (LW) export and precipitation patterns and intensity by analyzing the data on the annual volume of LW removed from 42 reservoirs and the daily precipitation at or near the reservoir sites. We also calculated the effective precipitation by considering the antecedent precipitation. Both daily and effective precipitation data were used as explanatory variables to explain LW export. The model selection revealed that the precipitation pattern and intensity controlling LW export varied with latitude in the Japanese archipelago. In small watersheds with narrow channel widths and low discharges, mass movements, such as landslides and debris flows, are major factors in the production and transport of LW. In this case, the effective precipitation required to initiate mass movements regulated the LW export and did not vary with the latitude. In intermediate and large watersheds with wide channel widths and high stream discharges, heavy rainfall and subsequent floods regulated buoyant depth, influencing the initiation of LW movement. In southern and central Japan, intense rainfall accompanied by typhoons or localized torrential downpours causes geomorphic disturbances, which introduce abundant pieces of LW into the channels. However, these pieces continue to be removed by repeated rainfall events. Therefore, LW export is supply-limited and potentially produces less LW accumulation. Conversely, in northern Japan, where typhoons and torrential downpours are rare, LW export is transport-limited because LW pieces recruited by bank erosion, tree mortality, and windthrow accumulate and persist on valley floors. These pieces may be easily exported by infrequent flooding.

Food sources of Sand Martins Riparia riparia during their breeding season: insights from stable-isotope analysis

Capsule Stable-isotope analysis indicated that terrestrial dipteran insects were the main food at a site in northern Japan.

Abundance and use of cavity trees at the tree- and stand-levels in natural and plantation forests in Hokkaido, Japan

The conservation of cavity trees in plantations is important for maintaining biodiversity because cavity trees are one of the forest attributes most strongly affected by forestry operations. We surveyed the occurrence of cavities at the tree-level and the abundance of cavity trees and the number of uses by secondary cavity users at the stand-level in natural and conifer plantation forests in Hokkaido, Japan. We classified cavities into two types by their formation processes: excavated and non-excavated. Excavated cavities were more common in dead trees than in live trees. Non-excavated cavities showed high occurrence in dead and live broad-leaved trees. The abundance of non-excavated cavity trees was two times greater than that of excavated cavity trees in natural forests, but, in plantations, excavated cavity trees were dominant. The abundance of non-excavated cavity trees was lower in thinned plantations than in not-thinned plantations. The number of cavity uses increased with the number of cavity trees, indicating the importance of maintaining cavity trees. Conifer plantations are established by removing native broad-leaved trees, which results in a lower abundance of non-excavated cavity trees in these locations. The conservation of broad-leaved trees is important for maintaining the current and future resource of non-excavated cavity trees in plantation forests, as is the conservation of dead trees, which showed a high occurrence of excavated cavities.

Development of a National Land-Use/Cover Dataset to Estimate Biodiversity and Ecosystem Services

Land-use/cover data are essential to estimate biodiversity and ecosystem services. Although many data and maps have been produced in Japan, there is significant variation in their characteristics, such as publication year, spatial resolution, and land-use/cover classification categories because the purposes of the data and maps differ (e.g., resource inventory). Unfortunately, little attention has so far been paid to biodiversity and ecosystem services, which require preparation of new land-use/cover data. First, we searched existing public national data in Japan published by government sectors and researchers and evaluated their characteristics. Second, we briefly reviewed user needs (e.g., temporal coverage, spatial resolution, and classification categories) to estimate biodiversity and ecosystem services. We then integrated the information, and we present herein a procedure to prepare a new national land-use/cover dataset from existing datasets to bridge the gaps between data producers and users by determining the temporal coverage needed to reveal historic change, determining the spatial resolution suitable for estimation, and setting classification categories needed for estimation. The resultant land-use/cover data could contribute significantly to research and management related to conservation of biodiversity and provision of ecosystem services.

Habitat use by endangered Japanese crayfish (Cambaroides japonicus) in low-gradient streams of southern Hokkaido, Japan: reach and microhabitat-scale analysis

The Japanese crayfish (Cambaroides japonicus), the only native crayfish in Japan, is endangered and has experienced rapid population declines. We surveyed the habitat requirements of Japanese crayfish at the reach and microhabitat scales in semi-natural low-gradient streams. Habitat use by Japanese crayfish differed between the spatial scales. Reach-scale analysis revealed that the bed slope was the only positive predictor of crayfish density. This finding indicates that relatively high-gradient reaches, such as headwater reaches, are an important habitat for the conservation of Japanese crayfish in low-gradient streams. Microhabitat-scale analysis showed that crayfish density was positively affected by substrate coarseness and the presence of instream vegetation cover (bank vegetation, woody debris, and leaf patches), whereas it was negatively affected by distance from the stream edge. Coarse substrates and vegetation cover may function as shelters from water flows and predators during low flow periods. The use of stream-edge areas may allow quick access to refugia and enable the crayfish to avoid unexpected flood disturbance and predation. These habitat characteristics should therefore be preserved for the conservation of Japanese crayfish, and scale-dependent habitat characteristics should be considered in future conservation plans.

Species-specific use of allochthonous resources by ground beetles (Carabidae) at a river–land interface

A variety of organisms mediate river–terrestrial linkages through spatial subsidies. However, most empirical studies have classified organisms rather broadly (e.g., by functional group or taxonomic family) and have dismissed species-level linkages at the interface of ecosystems. Here, we show how allochthonous resource use varies among taxonomically similar species of ground beetles (family Carabidae) across seasons (June–September). We investigated seasonal shifts in the distribution of five beetle species and their dietary responses to spatial subsidies (emerging aquatic insects) in a Japanese braided river. Despite their taxonomic closeness, the ground beetles showed species-specific responses to spatial subsidies, and beetle distribution patterns tended to coincide with their diets. Overall, 1–56% of ground beetle diets were derived from aquatic prey. One genus (Bembidion spp.) mainly consumed aquatic prey, while three species fed primarily on terrestrial prey across all seasons. However, one species (Lithochlaenius noguchii) showed shifts in its diet from aquatic to terrestrial prey according to subsidy availability. The observed variation in allochthonous resource use was likely related to species-specific foraging modes, physiological tolerance to dry conditions, and interspecific competition. Our findings suggest that considering species-specific interactions is necessary to fully understand cross-system interactions and recipient food-web dynamics.

The Distribution of Cool Spots as Microrefugia in a Mountainous Area.

It has recently been proposed that microrefugia played an important role in species survival during past climate change events. However, the current distributions of microrefugia remain largely unknown. Wind-hole sites are areas affected by preferential flows of cool air generated in interstitial spaces created by rock fragments or colluvia. Alpine plant species occurring in lowland wind-hole sites isolated from alpine zones may be relicts of the last glacial period. Hokkaido, northern Japan, is known to contain many wind-hole sites in which alpine plant species can occur. Here we surveyed 55 wind-hole sites in the Kitami region, eastern Hokkaido, and observed two alpine plant species (lingonberry, Vaccinium vitis-idaea, and Labrador tea, Rhododendron groenlandicum ssp. diversipilosum var. diversipilosum) in 14 wind-hole sites. Statistical modeling showed that wind-hole sites are likely to occur in areas with high maximum slope angles and volcanic rock cover, and concave surfaces. Our predictions of wind-hole site distributions suggest that such topographic conditions are common in our study area, and that many undiscovered wind-hole sites exist. Ignoring microhabitats may greatly underestimate species distributions in topographically complex regions, and dispersed cool spots may also function as stepping stones and temporal habitats for cold-adapted species. Because these localized unique habitats usually occur in economically unproductive sites, identifying and protecting potential microrefugia (cool spots) would be a robust and cost-effective mitigation of climate change impacts.

Establishment and characterization of a cell line derived from Eptesicus nilssonii

Bats of the genus Eptesicus have several non-retroviral RNA virus-derived sequences in their genomes, among which an endogenous bornavirus-like L element, named eEBLL-1, was suggested to encode functional proteins in the hosts. However, the function of eEBLL-1 remains unclear due to a lack of appropriate investigation tools, such as cultured cells expressing eEBLL-1. Here, we established a continuous cell line, named HAMOI-EnK cells, from kidney of Eptesicus nilssonii. HAMOI-EnK cells are robust and could be passaged for at least 10 months. eEBLL-1 in the genomes of HAMOI-EnK cells retains an intact open reading frame. Additionally, eEBLL-1 is transcribed in the sense-orientation in cells. To our knowledge, this is the first report to demonstrate that eEBLL-1 is transcribed in cultured cells.