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Dive into the research topics where Takuya Okabe is active.

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Featured researches published by Takuya Okabe.


Journal of Theoretical Biology | 2011

Physical phenomenology of phyllotaxis

Takuya Okabe

We propose an evolutionary mechanism of phyllotaxis, regular arrangement of leaves on a plant stem. It is shown that the phyllotactic pattern with the Fibonacci sequence has a selective advantage, for it involves the least number of phyllotactic transitions during plant growth.


Physical Review B | 1998

Spin-wave instability in itinerant ferromagnets

Takuya Okabe

We show variationally that instability of the ferromagnetic state in the Hubbard model is largely controlled by softening of a long-wavelength spin-wave excitation, except in the over-doped strong-coupling region where the individual-particle excitation becomes unstable first. A similar conclusion is drawn also for the double exchange ferromagnet. Generally the spin-wave instability may be regarded as a precursor of the metal-insulator transition.


Journal of Theoretical Biology | 2012

Systematic variations in divergence angle.

Takuya Okabe

Practical methods for quantitative analysis of radial and angular coordinates of leafy organs of vascular plants are presented and applied to published phyllotactic patterns of various real systems from young leaves on a shoot tip to florets on a flower head. The constancy of divergence angle is borne out with accuracy of less than a degree. It is shown that apparent fluctuations in divergence angle are in large part systematic variations caused by the invalid assumption of a fixed center and/or by secondary deformations, while random fluctuations are of minor importance.


Journal of Physics: Condensed Matter | 2010

Spin-fluctuation drag thermopower of nearly ferromagnetic metals

Takuya Okabe

We investigate theoretically the Seebeck effect in materials close to a ferromagnetic quantum critical point to explain anomalous behaviour at low temperatures. It is found that the main effect of spin fluctuations is to enhance the coefficient of the leading T-linear term, and a quantum critical behaviour characterized by a spin-fluctuation temperature appears in the temperature dependence of the correction terms as in the specific heat.


Scientific Reports | 2017

Optimal designs of mollusk shells from bivalves to snails

Takuya Okabe; Jin Yoshimura

Bivalve, ammonite and snail shells are described by a small number of geometrical parameters. Raup noted that the vast majority of theoretically possible shell forms do not occur in nature. The constraint factors that regulate the biased distribution of natural form have long since been an open problem in evolution. The problem of whether natural shell form is a result of optimization remains unsolved despite previous attempts. Here we solve this problem by considering the scaling exponent of shell thickness as a morphological parameter. The scaling exponent has a drastic effect on the optimal design of shell shapes. The observed characteristic shapes of natural shells are explained in a unified manner as a result of optimal utilization of shell material resources, while isometric growth in thickness leads to impossibly tight coiling.


Scientific Reports | 2015

Biophysical optimality of the golden angle in phyllotaxis.

Takuya Okabe

Plant leaves are arranged around a stem axis in a regular pattern characterized by common fractions, a phenomenon known as phyllotaxis or phyllotaxy. As plants grow, these fractions often transition according to simple rules related to Fibonacci sequences. This mathematical regularity originates from leaf primordia at the shoot tip (shoot apical meristem), which successively arise at fixed intervals of a divergence angle, typically the golden angle of 137.5°. Algebraic and numerical interpretations have been proposed to explain the golden angle observed in phyllotaxis. However, it remains unknown whether phyllotaxis has adaptive value, even though two centuries have passed since the phenomenon was discovered. Here, I propose a new adaptive mechanism explaining the presence of the golden angle. This angle is the optimal solution to minimize the energy cost of phyllotaxis transition. This model accounts for not only the high precision of the golden angle but also the occurrences of other angles observed in nature. The model also effectively explains the observed diversity of rational and irrational numbers in phyllotaxis.


Scientific Reports | 2018

Asymptotic stability of a modified Lotka-Volterra model with small immigrations

Takeru Tahara; Maica Krizna Areja Gavina; Takenori Kawano; Jerrold M. Tubay; Jomar F. Rabajante; Hiromu Ito; Satoru Morita; Genki Ichinose; Takuya Okabe; Tatsuya Togashi; Kei-ichi Tainaka; Akira Shimizu; Takashi Nagatani; Jin Yoshimura

Predator-prey systems have been studied intensively for over a hundred years. These studies have demonstrated that the dynamics of Lotka-Volterra (LV) systems are not stable, that is, exhibiting either cyclic oscillation or divergent extinction of one species. Stochastic versions of the deterministic cyclic oscillations also exhibit divergent extinction. Thus, we have no solution for asymptotic stability in predator-prey systems, unlike most natural predator-prey interactions that sometimes exhibit stable and persistent coexistence. Here, we demonstrate that adding a small immigration into the prey or predator population can stabilize the LV system. Although LV systems have been studied intensively, there is no study on the non-linear modifications that we have tested. We also checked the effect of the inclusion of non-linear interaction term to the stability of the LV system. Our results show that small immigrations invoke stable convergence in the LV system with three types of functional responses. This means that natural predator-prey populations can be stabilized by a small number of sporadic immigrants.


Scientific Reports | 2018

Multi-species coexistence in Lotka-Volterra competitive systems with crowding effects

Maica Krizna Areja Gavina; Takeru Tahara; Kei-ichi Tainaka; Hiromu Ito; Satoru Morita; Genki Ichinose; Takuya Okabe; Tatsuya Togashi; Takashi Nagatani; Jin Yoshimura

Classical Lotka-Volterra (LV) competition equation has shown that coexistence of competitive species is only possible when intraspecific competition is stronger than interspecific competition, i.e., the species inhibit their own growth more than the growth of the other species. Note that density effect is assumed to be linear in a classical LV equation. In contrast, in wild populations we can observed that mortality rate often increases when population density is very high, known as crowding effects. Under this perspective, the aggregation models of competitive species have been developed, adding the additional reduction in growth rates at high population densities. This study shows that the coexistence of a few species is promoted. However, an unsolved question is the coexistence of many competitive species often observed in natural communities. Here, we build an LV competition equation with a nonlinear crowding effect. Our results show that under a weak crowding effect, stable coexistence of many species becomes plausible, unlike the previous aggregation model. An analysis indicates that increased mortality rate under high density works as elevated intraspecific competition leading to the coexistence. This may be another mechanism for the coexistence of many competitive species leading high species diversity in nature.


Scientific Reports | 2016

Optimal hash arrangement of tentacles in jellyfish

Takuya Okabe; Jin Yoshimura

At first glance, the trailing tentacles of a jellyfish appear to be randomly arranged. However, close examination of medusae has revealed that the arrangement and developmental order of the tentacles obey a mathematical rule. Here, we show that medusa jellyfish adopt the best strategy to achieve the most uniform distribution of a variable number of tentacles. The observed order of tentacles is a real-world example of an optimal hashing algorithm known as Fibonacci hashing in computer science.


Physical Review B | 2007

Kadowaki-Woods ratio for strongly coupled Fermi liquids

Takuya Okabe

On the basis of the Fermi liquid theory, the Kadowaki-Woods ratio

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Maica Krizna Areja Gavina

University of the Philippines Los Baños

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Jerrold M. Tubay

University of the Philippines Los Baños

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