Tamás Deák

Genetic structure of peripheral, island-like populations: a case study of Saponaria bellidifolia Sm. (Caryophyllaceae) from the Southeastern Carpathians

Geographically peripheral populations often experience a reduction of genetic diversity and divergence from the core populations. Habitat geometry and quality can induce a local genetic diversity pattern, which overlies the regional variability issued from the range-wide phylogeography. We evaluated the genetic variation and genetic divergence of Saponaria bellidifolia Sm. on limestone outcrops within peripheral island-like populations from the Southeastern Carpathians, using RAPD markers. We also determined the degree of isolation related to other European populations, using AFLP. The Romanian populations had a decreased overall genetic diversity shared among populations, with lower level in small populations. Potential habitat size had a positive effect on genetic diversity estimates. Fisher’s exact tests of genetic differentiation revealed significant divergences only between the geographically most distant populations. Romanian populations were genetically pauperised as compared to Bulgarian and Italian populations and our results suggest that they might have originated from a recent range expansion from southern glacial refugia.

Differentiation of grapevine (Vitis vinifera L.) conculta members based on molecular tools

Twenty-seven grapevine (Vitis vinifera L.) varieties within 12 putative berry colour variation groups (conculta) were genotyped with 14 highly polymorphic microsatellite (simple sequence repeats (SSR)) markers. Three additional oligonucleotide primers were applied for the detection of the Gret1 retroelement insertion in the promoter region of VvMybA1 transcription factor gene regulating the UFGT (UDP-glucose: flavonoid 3-O-glucosyltransferase) activity. UFGT is the key enzyme of the anthocyanin biosynthetic pathway. SSR results proved that the analysed cultivars can be grouped only into nine concultas, the other three putative berry colour variant groups consist of homonyms as a consequence of misnaming. In the case of Sárfehér-Sárpiros, Delaware red-Delaware white and Járdovány fekete-Járdovány fehér, it was attested that they are not bud sports, but homonyms. Some conculta members could be differentiated according to the presence or the absence of the Gret1 retroelement (Chasselas, Furmint and Lisztes), while others, Bajor, Bakator, Gohér and Traminer conculta members, remained indistinguishable either by the microsatellites or the Gret1-based method.

Candidate plant gene homologues in grapevine involved in Agrobacterium transformation

The grapevine (Vitis vinifera) genome was analyzed in silico for homologues of plant genes involved in Agrobacterium transformation in Arabidopsis thaliana and Nicotiana spp. Grapevine homologues of the glucomannan 4-betamannosyltransferase 9 gene CslA-09 involved in bacterial attachment to the cell wall, homologues of reticulon-like proteins BTI1, 2, 3 and RAB8 GTPases, both involved in T-DNA transfer to the host cell, homologues of VirE2 interacting protein VIP1 that contributes to the targeting of T-DNA into the nucleus and to its integration, and homologues of the histone protein H2A, which promotes the expression of T-DNA encoded genes, were selected. Sequences homologous to the arabinogalactan-protein AtAGP17 were not found in the grape genome. Seventeen selected candidates were tested by semiquantitative RT-PCR analysis for changes in their expression levels upon inoculation with Agrobacterium tumefaciens C58. Of the tested homologues, the expression of VvRab8a, VvVip1a and two histone genes (VvHta2 and VvHta10) increased significantly, therefore we hypothesize that these might be involved in Agrobacterium transformation of V. vinifera.

Assembling patchy nanorods with spheres: limitations imposed by colloidal interactions

For gold nanorods the intrinsic shape-anisotropy offers the prospect of anisotropic assembly, provided that their region-selective surface modification can be realized. Here we developed nanorods with a patchy surface chemistry, featuring positively charged molecules in the tip region and polymer molecules at the sides by careful control of molecule concentrations during ligand exchange. When these patchy nanorods are assembled with small negatively charged spherical particles, electric double layer interaction can direct the assembly of two nanospheres at the opposite ends of the nanorods. The PEG chains promote the selectivity of the procedure. As the size of the nanospheres increases, they start to shift towards the side of the nanorod due to increased van der Waals interaction. When the relative size of the nanospheres is even larger, only a single nanosphere is assembled, but instead of the tip region, they are attached to the side of the nanorods. The apparent cross-over of the region-selectivity can be interpreted in terms of colloidal interactions, i.e. the second spherical particle is excluded due to nanosphere-nanosphere electric double layer repulsion, while the large vdW attraction results in a side positioning of the single adsorbed spherical particle. The results underline the importance of absolute values of the different interaction strengths and length scales in the programmed assembly of patchy nanoscale building blocks.

Marker assisted selection for seedlessness in a multiresistant table grape hybrid family

Resistant table grape cultivars, without any compromise in quality and resistance, would be greatly advantageous for consumers. In this study, the cross VRH 3082-1-42 × ?Kishmish moldvaskii? has been used to investigate the usefulness of the SSC8 marker for MAS. The SCC8 marker results were consistent with the progeny phenotypes. Although the seeded parent showed an unusual genotype, the genotyping of the population could be carried out. We traced back the haplotypes of the resistant donor parent. Based on our findings, the dominant, seedlessness-linked SCC8+ allele of the seeded VRH 3082-1-42 should be considered as a recombinant; the presence of a null allele could be explained by larger DNA rearrangements instead of mutations in the priming sites.

Genomics of grapevine: from genomics research on model plants to crops and from science to grapevine breeding

Abstract: The grape breeding industry is dynamic, with new cultivars being released annually. In recent years there has been interest in breeding new grape cultivars to develop a new gene with wider ecological adaptation and to provide a response to viral pathogens. To achieve these goals, biotechnological approaches to plant disease are employed. Genomic studies and genetic markers can significantly speed up the selection of resistant seedlings. Natural virus resistance may be exploited by transfer of genes from resistant genotypes. Plant transformation has become an essential tool for plant molecular biologists, and genetically improved plants are the focus of many breeding programs. Integration of genes from diverse biological sources into grape genomes promises to broaden the gene pool and tailor plant varieties for specific traits. This chapter presents the molecular characterization and localization of T-DNA insertion in grapevines carrying genes of viral origin. Detailed analyses have revealed the crucial factors that influence transgene expression. Plants appear to respond to infection by activating a post-transcriptional gene silencing mechanism.