Thijs L. Pons

Estimating mesophyll conductance to CO2: methodology, potential errors, and recommendations

The three most commonly used methods for estimating mesophyll conductance (g(m)) are described. They are based on gas exchange measurements either (i) by themselves; (ii) in combination with chlorophyll fluorescence quenching analysis; or (iii) in combination with discrimination against (13)CO(2). To obtain reliable estimates of g(m), the highest possible accuracy of gas exchange is required, particularly when using small leaf chambers. While there may be problems in achieving a high accuracy with leaf chambers that clamp onto a leaf with gaskets, guidelines are provided for making necessary corrections that increase reliability. All methods also rely on models for the calculation of g(m) and are sensitive to variation in the values of the model parameters. The sensitivity to these factors and to measurement error is analysed and ways to obtain the most reliable g(m) values are discussed. Small leaf areas can best be measured using one of the fluorescence methods. When larger leaf areas can be measured in larger chambers, the online isotopic methods are preferred. Using the large CO(2) draw-down provided by big chambers, and the isotopic method, is particularly important when measuring leaves with high g(m) that have a small difference in [CO(2)] between the substomatal cavity and the site of carboxylation in the chloroplast (C(i)-C(c) gradient). However, equipment for the fluorescence methods is more easily accessible. Carbon isotope discrimination can also be measured in recently synthesized carbohydrates, which has its advantages under field conditions when large number of samples must be processed. The curve-fitting method that uses gas exchange measurements only is not preferred and should only be used when no alternative is available. Since all methods have their weaknesses, the use of two methods for the estimation of g(m), which are as independent as possible, is recommended.

Canopy structure and leaf nitrogen distribution in a stand of Lysimachia vulgaris L. as influenced by stand density

SummaryA hypothesis that a dense stand should develop a less uniform distribution of leaf nitrogen through the canopy than an open stand to increase total canopy photosynthesis was tested with experimentally established stands of Lysimachia vulgaris L. The effect of stand density on spatial variation of photon flux density, leaf nitrogen and specific leaf weight within the canopy was examined. Stand density had little effect on the value of the light extinction coefficient, but strongly affected the distribution of leaf nitrogen per unit area within a canopy. The open stand had more uniform distribution of leaf nitrogen than the dense stand. However, different light climates between stands explained only part of the variation of leaf nitrogen in the canopy. The specific leaf weight in the canopy increased with increasing relative photon flux density and with decreasing nitrogen concentration.

Plant Water Relations

Although water is the most abundant molecule on the Earth’s surface, the availability of water is the factor that most strongly restricts terrestrial plant production on a global scale. Low water availability limits the productivity of many natural ecosystems, particularly in dry climates (Fig. 3.1). In addition, losses in crop yield due to water stress exceed losses due to all other biotic and environmental factors combined (Boyer 1985). Regions where rainfall is abundant and fairly evenly distributed over the growing season, such as in the wet tropics, have lush vegetation. Where summer droughts are frequent and severe, forests are replaced by grasslands, as in the Asian steppes and North American prairies. Further decrease in rainfall results in semidesert, with scattered shrubs, and finally deserts. Even the effects of temperature are partly exerted through water relations because rates of evaporation and transpiration are correlated with temperature. Thus, if we want to explain natural patterns of productivity or to increase productivity of agriculture or forestry, it is crucial that we understand the controls over plant water relations and the consequences for plant growth of an inadequate water supply.

The art of growing plants for experimental purposes: a practical guide for the plant biologist

Every year thousands of experiments are conducted using plants grown under more-or-less controlled environmental conditions. The aim of many such experiments is to compare the phenotype of different species or genotypes in a specific environment, or to study plant performance under a range of suboptimal conditions. Our paper aims to bring together the minimum knowledge necessary for a plant biologist to set up such experiments and apply the environmental conditions that are appropriate to answer the questions of interest. We first focus on the basic choices that have to be made with regard to the experimental setup (e.g. where are the plants grown; what rooting medium; what pot size). Second, we present practical considerations concerning the number of plants that have to be analysed considering the variability in plant material and the required precision. Third, we discuss eight of the most important environmental factors for plant growth (light quantity, light quality, CO2, nutrients, air humidity, water, temperature and salinity); what critical issues should be taken into account to ensure proper growth conditions in controlled environments and which specific aspects need attention if plants are challenged with a certain a-biotic stress factor. Finally, we propose a simple checklist that could be used for tracking and reporting experimental conditions.

Leaf Respiration in Light and Darkness (A Comparison of Slow- and Fast-Growing Poa Species).

We investigated whether leaf dark respiration (nonphotorespiratory mitochondrial CO2 release) is inhibited by light in several Poa species, and whether differences in light inhibition between the species are related to differences in the rate of leaf net photosynthesis. Four lowland (Poa annua L., Poa compressa L., Poa pratensis L., and Poa trivialis L.), one subalpine (Poa alpina L.), and two alpine (Poa costiniana Vick. and Poa fawcettiae Vick.) Poa species differing in whole plant relative growth rates were grown under identical controlled conditions. Nonphotorespiratory mitochondrial CO2 release in the light (Rd) was estimated according to the Laisk method. Photosynthesis was measured at ambient CO2 partial pressure (35 Pa) and 500 [mu]mol photons m-2 s-1. The rate of photosynthesis per unit leaf mass was positively correlated with the relative growth rate, with the slow-growing alpine Poa species exhibiting the lowest photosynthetic rates. Rates of both Rd and respiration in darkness were also substantially lower in the alpine species. Nonphotorespiratory CO2 release in darkness was higher than Rd in all species. However, despite some variation between the species in the level of light inhibition of respiration, no relationship was observed between the level of inhibition and the rate of photosynthesis. Similarly, the level of inhibition was not correlated with the relative growth rate. Our results support the suggestion that rates of leaf respiration in the light are closely associated with rates in darkness.

Submergence-Induced Morphological, Anatomical, and Biochemical Responses in a Terrestrial Species Affect Gas Diffusion Resistance and Photosynthetic Performance

Gas exchange between the plant and the environment is severely hampered when plants are submerged, leading to oxygen and energy deficits. A straightforward way to reduce these shortages of oxygen and carbohydrates would be continued photosynthesis under water, but this possibility has received only little attention. Here, we combine several techniques to investigate the consequences of anatomical and biochemical responses of the terrestrial species Rumex palustris to submergence for different aspects of photosynthesis under water. The orientation of the chloroplasts in submergence-acclimated leaves was toward the epidermis instead of the intercellular spaces, indicating that underwater CO2 diffuses through the cuticle and epidermis. Interestingly, both the cuticle thickness and the epidermal cell wall thickness were significantly reduced upon submergence, suggesting a considerable decrease in diffusion resistance. This decrease in diffusion resistance greatly facilitated underwater photosynthesis, as indicated by higher underwater photosynthesis rates in submergence-acclimated leaves at all CO2 concentrations investigated. The increased availability of internal CO2 in these “aquatic” leaves reduced photorespiration, and furthermore reduced excitation pressure of the electron transport system and, thus, the risk of photodamage. Acclimation to submergence also altered photosynthesis biochemistry as reduced Rubisco contents were observed in aquatic leaves, indicating a lower carboxylation capacity. Electron transport capacity was also reduced in these leaves but not as strongly as the reduction in Rubisco, indicating a substantial increase of the ratio between electron transport and carboxylation capacity upon submergence. This novel finding suggests that this ratio may be less conservative than previously thought.

Oxygen isotopes in tree rings are a good proxy for Amazon precipitation and El Niño-Southern Oscillation variability

We present a unique proxy for the reconstruction of variation in precipitation over the Amazon: oxygen isotope ratios in annual rings in tropical cedar (Cedrela odorata). A century-long record from northern Bolivia shows that tree rings preserve the signal of oxygen isotopes in precipitation during the wet season, with weaker influences of temperature and vapor pressure. Tree ring δ18O correlates strongly with δ18O in precipitation from distant stations in the center and west of the basin, and with Andean ice core δ18O showing that the signal is coherent over large areas. The signal correlates most strongly with basin-wide precipitation and Amazon river discharge. We attribute the strength of this (negative) correlation mainly to the cumulative rainout processes of oxygen isotopes (Rayleigh distillation) in air parcels during westward transport across the basin. We further find a clear signature of the El Niño-Southern Oscillation (ENSO) in the record, with strong ENSO influences over recent decades, but weaker influence from 1925 to 1975 indicating decadal scale variation in the controls on the hydrological cycle. The record exhibits a significant increase in δ18O over the 20th century consistent with increases in Andean δ18O ice core and lake records, which we tentatively attribute to increased water vapor transport into the basin. Taking these data together, our record reveals a fresh path to diagnose and improve our understanding of variation and trends of the hydrological cycle of the world’s largest river catchment.

Cytokinin Import Rate as a Signal for Photosynthetic Acclimation to Canopy Light Gradients

Plants growing in dense canopies are exposed to vertical light gradients and show photosynthetic acclimation at the whole-plant level, resulting in efficient photosynthetic carbon gain. We studied the role of cytokinins transported through the transpiration stream as one of probably multiple signals for photosynthetic acclimation to light gradients using both tobacco (Nicotiana tabacum) and Arabidopsis (Arabidopsis thaliana). We show that substantial variation in leaf transpiration parallels the light gradient in tobacco canopies and experimental reduction of the transpiration rate of a leaf, independent of light, is sufficient to reduce photosynthetic capacity in both species, as well as transcript levels of the small subunit of Rubisco (rbcS) gene in Arabidopsis. Mass spectrometric analysis of xylem sap collected from intact, transpiring tobacco plants revealed that shaded leaves import less cytokinin than leaves exposed to high light. In Arabidopsis, reduced transpiration rate of a leaf in the light is associated with lower cytokinin concentrations, including the bioactive trans-zeatin and trans-zeatin riboside, as well as reduced expression of the cytokinin-responsive genes ARR7 and ARR16. External application of cytokinin to shaded leaves rescued multiple shade effects, including rbcS transcript levels in both species, as did locally induced cytokinin overproduction in transgenic tobacco plants. From these data, we conclude that light gradients over the foliage of a plant result in reduced cytokinin activity in shaded leaves as a consequence of reduced import through the xylem and that cytokinin is involved in the regulation of whole-plant photosynthetic acclimation to light gradients in canopies.

Photosynthetic acclimation to high light conditions in mature leaves of Coffea arabica L. : role of xanthophylls, quenching mechanisms and nitrogen nutrition

Young coffee plants (Coffea arabica L. cv. Catuai), originally from a shaded habitat, were separated in three groups to be grown under different levels of N fertilization: 0.3 mmol N supplements were given to the soil every 7 days (high N treatment, 2N), every 15 days (medium N treatment, 1N) and every 45 days (low N treatment, 0N). These plants were later exposed to a high sunlight irradiance (noon PPFD up to 1500 µmol m–2 s–1 ) for a period of 12 or 15 days. Among others, the values of electron trans-port capacity, maximum carboxylation activity, photosynthetic capacity (Amax) and several fluorescence parameters (Fv/Fm, Fv´/Fm´, qP, pe) first showed a reduction (until the 4th–7th day) in all N treatments, followed by an N-dependent recovery. The 2N plants were less affected in the first few days and, at the end of the stress period, showed a better recovery for most of the studied parameters and the highest increase in the saturating PPFD for net photosynthesis and A max . The present work shows that the ability to acclimate displayed by the mature leaves of 2N plants was accompanied by an increase in energy dis-sipation mechanisms. These include an increase in the ‘high energy’ quenching and, mostly, the presence of higher contents of some xanthophylls (zeaxanthin and lutein) and carotenes, which helped to decrease the energetic overcharge in the photosystems. Pigment changes in mature leaves suggest that N can promote specific mechanisms of acclimation others than those that might be expected from a preferential partition of the element N into photosynthetic components.

Analysis of differences in photosynthetic nitrogen use efficiency of alpine and lowland Poa species

Abstract This study investigates factors determining variation in photosynthetic nitrogen use efficiency (φN) in seven slow- and fast-growing Poa species from altitudinally contrasting sites. The species and their environmental origin were (in order of increasing relative growth rate): two alpine (Poa fawcettiae and P. costiniana), one sub-alpine (P. alpina) and three temperate lowland perennials (P. pratensis, P. compressa and P. trivialis), as well as one temperate lowland annual (P. annua). Plants were grown hydroponically under identical conditions with free access to nutrients in a growth room. Photosynthesis per unit leaf area measured at growth irradiance (500 μmol m−2 s−1) was slightly higher in the slow-growing alpine species. At saturating light intensities, photosynthesis was considerably higher in the alpine species than in the lowland species. Carboxylation capacity and Rubisco content per unit leaf area were also greater in the alpine species. Despite variation between the species, the in vivo specific activity of Rubisco showed little relationship to relative growth rate or photosynthetic rate. Both at light saturation and at the growth irradiance, φN was lowest in the slow-growing alpine species P. fawcettiae, P. costiniana and P. alpina, and highest in the fast-growing P. compressa and P. annua. The proportion of leaf nitrogen that was allocated to photosynthetic capacity and the in vivo catalytic constant of Rubisco accounted for most of the variation in φN at light saturation. Minor variations in intercellular CO2 partial pressure also contributed to some extent to the variations in φN at light saturation. The low φN values at growth irradiance exhibited by the alpine species were additionally due to a lower percentage utilisation of their high photosynthetic capacity compared to the lowland species.