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Featured researches published by Thomas A. Jefferson.


Biological Conservation | 1994

A global review of porpoise (Cetacea: Phocoenidae) mortality in gillnets

Thomas A. Jefferson; Barbara E. Curry

A global review of mortality of porpoises in gillnet fisheries indicates that individuals of all six species become entangled and die in gillnets. Harbor porpoises Phocoena phocoena are taken throughout their range and several populations are in decline, at least partly as a result of gillnet entanglement. The vaquita P. sinus is the most endangered cetacean species, and gillnet fisheries in the northern Gulf of California, Mexico, threaten the single population with extinction. Burmeisters porpoises P. spinipinnis are taken in several gillnet fisheries in South America; populations in Peru appear to be most severely affected. In southern South America, spectacled porpoises Australophocaena dioptrica are known to be caught in gillnets, but the effects of these takes are unknown. Primarily in the western North Pacific, Dalls porpoises Phocoenoides dalli are entangled in driftnet fisheries in large numbers, but so far major impacts have not been apparent. Although taken in gillnets in many areas throughout the Indo-Pacific region, only those finless porpoise Neophocaena phocaenoides populations in China are considered to be threatened by gillnet catches. In most circumstances, existing information is insufficient to evaluate the effects of gillnets on porpoise v to be severe. Gillnets represent the single most important threat to porpoises as a group, and this may be an example of a ‘no technical solution problem’. We conclude that better documentation of catches and new approaches to dealing with porpoise/gillnet interaction problems are needed in order to prevent the loss of several species and populations.


Advances in Marine Biology | 2016

Re-assessment of the Conservation Status of the Indo-Pacific Humpback Dolphin (Sousa chinensis) Using the IUCN Red List Criteria

Thomas A. Jefferson; Brian D. Smith

The IUCN Red List designation of the Indo-Pacific humpback dolphin (Sousa chinensis) is re-assessed in light of its newly recognized taxonomic status (it has recently been separated into three species) and findings that humpback dolphins along the coast of Bangladesh, and possibly eastern India, are phylogenetically distinct from other members of the Sousa genus. Sousa chinensis is found in Southeast/South Asia (in both the Indian and Pacific oceans), from at least the southeastern Bay of Bengal east to central China, and then south to the Indo-Malay Archipelago. There are no global population estimates, and the sum of available abundance estimates add up to about 5700 individuals, although only a portion of the range has been covered by surveys. This species occurs in shallow (<30m deep), coastal waters of the tropics and subtropics, and feeds mainly on small fishes. It has a similar reproductive biology to other large dolphins, occurs mostly in small groups, and generally has individual movements of about 50-200km(2). Major threats throughout the range include entanglement in fishing nets (primarily gillnets) and habitat destruction/degradation, although in some more industrialized areas, vessel traffic, and environmental contamination from organochlorines are also serious issues. Conservation management is largely lacking in most parts of the species range, although there has been significant (though still inadequate) attention in some parts of China (e.g. Hong Kong and adjacent areas, and Taiwan). Much greater efforts are needed toward conservation of Indo-Pacific humpback dolphins to stop apparent declines, and to lower the species extinction risk. Sousa chinensis meets the IUCN Red List requirements for Vulnerable (under criteria A4cd), with fisheries bycatch and habitat loss/degradation being the main pervasive threats.


African Zoology | 2011

West Africa's Atlantic Humpback Dolphin (Sousa teuszii): Endemic, Enigmatic and Soon Endangered?

Caroline R. Weir; Koen Van Waerebeek; Thomas A. Jefferson; Tim Collins

Atlantic humpback dolphins (Sousa teuszii) are endemic to nearshore West African waters between Western Sahara and Angola. They are considered Vulnerable by the International Union for Conservation of Nature based on restricted geographic range, low abundance and apparent decline in recent decades. We review the human activities most likely to affect the species and consider appropriate conservation actions. Bycatch (incidental capture) in gillnets is the greatest immediate threat. Deaths from entanglement have been documented in Mauritania, Senegal, Guinea-Bissau, Guinea and the Republic of the Congo. In Namibe Province, Angola, 4.8 artisanal fishing boats and two gillnets per km were observed in some areas within 1 km of the coast and gillnets are deployed regularly inside bays used by dolphins. Other concerns include the ‘marine bushmeat’ trade, habitat loss/degradation, overfishing, marine pollution, anthropogenic sound and climate change. Conservation challenges include a paucity of scientific data on the species, and widespread human poverty within most range states, resulting in high dependence on artisanal fisheries. Recommended conservation and research priorities include: (1) distribution and abundance surveys in known and potential range states, (2) bycatch monitoring programmes, (3) education/awareness schemes, and (4) protection of core areas via reduction/elimination of nearshore gillnetting.


Encyclopedia of Marine Mammals (Second Edition) | 2009

Dall’s Porpoise: Phocoenoides dalli

Thomas A. Jefferson

Summary Dall’s porpoise is a stocky generally cold-water oceanic species of the North Pacific Ocean, probably most closely related to the harbor porpoise. They feed on a variety of schooling and mesopelagic fishes and squid, with much feeding probably occurring at night on prey associated with the deep scattering layer. Dall’s porpoises are rapid swimmers and surfacers, often creating a “rooster tail” of white water spray as they surface to breathe.


Advances in Marine Biology | 2016

Conservation Status of the Indo-Pacific Humpback Dolphin (Sousa chinensis) in the Northern Beibu Gulf, China.

Bingyao Chen; Xinrong Xu; Thomas A. Jefferson; Paula A. Olson; Qiurong Qin; Hongke Zhang; Liwen He; Guang Yang

There has been very little previous research on Indo-Pacific humpback dolphins (Sousa chinensis) in the Beibu Gulf of southern China. Here, we report on the population size, habitat and ecology, threats, and overall conservation status of this putative population. Population size was estimated based on photo-identification mark/recapture analysis. It was estimated to number a total of 398-444 individuals (95% CI: 393-506), with two apparently distinct groups in the Dafengjiang-Nanliujiang Estuary and at Shatian-Caotan. Movements of dolphins in the Beibu Gulf appear to be limited, with high site fidelity. These dolphins were found to occur mainly in shallow coastal waters near estuaries. The main threats are fisheries interactions (including by-catch), vessel traffic, mariculture operations, dolphin-watching tourism, and habitat degradation (including marine construction activities and large-scale land reclamation). Although the conservation status of this putative population has been considered to be better than that of other populations of the species in more northern areas of China, there is still reason for strong concern about its future, and several management recommendations are made.


Advances in Marine Biology | 2015

Humpback Dolphins: A Brief Introduction to the Genus Sousa.

Thomas A. Jefferson; Barbara E. Curry

The delphinid genus Sousa has recently undergone a major revision, and currently contains four species, the Atlantic humpback (Sousa teuszii), Indian Ocean humpback (Sousa plumbea), Indo-Pacific humpback (Sousa chinensis), and Australian humpback (Sousa sahulensis) dolphins. Recent molecular evidence suggests that humpback dolphins in the Bay of Bengal may comprise a fifth species. These moderate-sized dolphin species are found in shallow (<30m), coastal waters of the eastern Atlantic, Indian, and western Pacific oceans. Abundance and trends have only been studied in a few areas, mostly in eastern Africa, China, and northern Australia. No global, empirically derived abundance estimates exist for any of the four species, but none appear to number more than about 20,000 individuals. Humpback dolphins feed mostly on small fishes, and sometimes shrimps; occur for the most part in small groups (mostly 12 or less); have limited nearshore movements; and in most parts of their range exhibit a fission/fusion type of social organization. Major threats that affect all the species are entanglement in fishing gear, and habitat degradation/destruction from various forms of coastal development. Impacts from vessel traffic (including behavioural disturbance and displacement, as well as mortality and morbidity from collisions with vessels) appear to be significant in most areas. Several other threats are apparently significant only in particular parts of the range of some species (e.g. high levels of organochlorine contaminants affecting Indo-Pacific humpback dolphins in Hong Kong). Direct hunting only occurs in limited areas and primarily on a small scale. Conservation actions so far have been limited, with most populations receiving little study and almost no management attention. Much more work is needed on humpback dolphin population status, threats, and how the major threats can be reduced or eliminated. Extinction risks for the four species and some populations are preliminarily re-assessed using the IUCN Red List criteria in the current volume. The results suggest that all four species in the genus are threatened at some level (suggested Red List status ranges from Vulnerable for S. chinensis and S. sahulensis to Critically Endangered for S. teuszii).


Archive | 1992

Cetacean Detection and Responses to Fishing Gear

Thomas A. Jefferson; Bernd Würsig; Dagmar Fertl

Cetaceans interact with fisheries throughout the world (see reviews in Northridge, 1984, 1991; Currey et al., 1990, 1991; Bjorge et al., 1991). These interactions can be divided into operational and predatory types (Beddington et al., 1985). Predatory interactions include effects of prey competition between fisheries and cetacean stocks. Operational interactions refer to gear damage by cetaceans and incidental catch of cetaceans in fisheries. This paper will only deal with operational interactions, and will focus on problems of incidental catch. Directed fisheries for cetaceans will not be discussed in this paper.


Science of The Total Environment | 2017

Trace element concentrations, risks and their correlation with metallothionein genes polymorphism: A case study of narrow-ridged finless porpoises (Neophocaena asiaeorientalis) in the East China Sea

Jun Liu; Bingyao Chen; Thomas A. Jefferson; Hui Wang; Guang Yang

The concentration of trace elements (TEs) and their risk to narrow-ridged finless porpoises (Neophocaena asiaeorientalis) are still unclear. The present study determined the concentration of typical TEs in liver, kidney, and muscle tissues from porpoises in the East China Sea, assessed potential health risk of TEs to porpoises, and explored the relationship between TE concentration and metallothionein genes (MTs) polymorphism. It was found that Zn, Cu, Mn, Cd and Hg were highly accumulated in liver, and Cd was highly accumulated in kidney. The concentrations of Cr, As, Pb and Ni were very low in all three tissues. TE concentrations showed significant positive correlation with body length, and sexual variation. The levels of most TEs were higher in tissues of porpoises in Ningbo and Nantong than in Pingtan, which is likely related to the local environment pollution level. The risk assessment showed that porpoises from Nantong and Ningbo could face health risks due to Hg, As, Cd, Pb, and Cr exposure. Moreover, two polymorphic sites on the MT4 gene were found to be significantly associated with increased levels of Hg, Cd, Zn and Mn. Whether these two polymorphic sites are involved in expression of MTs, or other functional processes, needs further research.


Journal of the Acoustical Society of America | 2016

Indo-Pacific humpback dolphin occurrence north of Lantau Island, Hong Kong, based on year-round passive acoustic monitoring

Lisa Munger; Marc O. Lammers; Mattie Cifuentes; Bernd Würsig; Thomas A. Jefferson; Samuel K. Hung

Long-term passive acoustic monitoring (PAM) was conducted to study Indo-Pacific humpback dolphins, Sousa chinensis, as part of environmental impact assessments for several major coastal development projects in Hong Kong waters north of Lantau Island. Ecological acoustic recorders obtained 2711 days of recording at 13 sites from December 2012 to December 2014. Humpback dolphin sounds were manually detected on more than half of days with recordings at 12 sites, 8 of which were within proposed reclamation areas. Dolphin detection rates were greatest at Lung Kwu Chau, with other high-occurrence locations northeast of the Hong Kong International Airport and within the Lung Kwu Tan and Siu Ho Wan regions. Dolphin detection rates were greatest in summer and autumn (June-November) and were significantly reduced in spring (March-May) compared to other times of year. Click detection rates were significantly higher at night than during daylight hours. These findings suggest high use of many of the proposed reclamation/development areas by humpback dolphins, particularly at night, and demonstrate the value of long-term PAM for documenting spatial and temporal patterns in dolphin occurrence to help inform management decisions.


Journal of Mammalogy | 2018

Geographic variation in pigmentation patterns of Indo-Pacific humpback dolphins (Sousa chinensis) in Chinese waters

Bingyao Chen; Thomas A. Jefferson; Lin Wang; Huili Gao; Hongke Zhang; Yu Zhou; Xinrong Xu; Guang Yang

The pigmentation patterns of Indo-Pacific humpback dolphins have not been well studied throughout most of the species range. In the present study, both the subjective scoring method and a newly developed quantified scoring method were employed to evaluate the spotting intensity of 137 humpback dolphin individuals from the Xiamen and Beibu Gulf putative populations, including the Dafengjiang-Nanliujiang River Estuary (DRE) and Shatian-Caotan (SC) communities. Both scoring methods indicated that spotting intensity on the dorsal fin was lower than that on the body of humpback dolphins in all 3 groups. The SC and DRE humpback dolphins had significantly greater dorsal fin, body spotting intensity, and greater differences between spotting on the dorsal fin and body than Xiamen dolphins, while no differences were found between SC and DRE. The pigmentation variation is related to age class, young dolphins have more spotting density than adults, and young and adults showed similar geographical variation as above. The present paper, in combination with previous research, clarifies the general pattern of pigmentation for Chinese humpback dolphins. Eastern Taiwan Strait and Pearl River Estuary populations represent 2 extreme patterns of pigmentation, while the Xiamen population, SC community, and DRE community seem to be intermediate. The results suggest that these groups should be viewed as demographically distinct forms.

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Marc A. Webber

California Academy of Sciences

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Bingyao Chen

Nanjing Normal University

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Guang Yang

Nanjing Normal University

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Xinrong Xu

Nanjing Normal University

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Hui Wang

Nanjing Normal University

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Lin Wang

Nanjing Normal University

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