Thomas C. Kelly

Identifying practical indicators of biodiversity for stand-level management of plantation forests

Identification of valid indicators of biodiversity is a critical need for sustainable forest management. We developed compositional, structural and functional indicators of biodiversity for five taxonomic groups—bryophytes, vascular plants, spiders, hoverflies and birds—using data from 44 Sitka spruce (Picea sitchensis) and ash (Fraxinus excelsior) plantation forests in Ireland. The best structural biodiversity indicator was stand stage, defined using a multivariate classification of forest structure variables. However, biodiversity trends over the forest cycle and between tree species differ among the taxonomic groups studied. Canopy cover was the main structural indicator and affected other structural variables such as cover of lower vegetation layers. Other structural indicators included deadwood and distances to forest edge and to broadleaved woodland. Functional indicators included stand age, site environmental characteristics and management practices. Compositional indicators were limited to more easily identifiable plant and bird species. Our results suggest that the biodiversity of any one of the species groups we surveyed cannot act as a surrogate for all of the other species groups. However, certain subgroups, such as forest bryophytes and saproxylic hoverflies, may be able to act as surrogates for each other. The indicators we have identified should be used together to identify stands of potentially high biodiversity or to evaluate the biodiversity effects of silvicultural management practices. They are readily assessed by non-specialists, ecologically meaningful and applicable over a broad area with similar climate conditions and silvicultural systems. The approach we have used to develop biodiversity indicators, including stand structural types, is widely relevant and can enhance sustainable forest management of plantations.

Lyapunov functions for SIR and SIRS epidemic models

In this paper, we construct a new Lyapunov function for a variety of SIR and SIRS models in epidemiology. Global stability of the endemic equilibrium states of these systems is established.

Effects of growth stage and tree species composition on breeding bird assemblages of plantation forests

Capsule Bird species assemblages are strongly dependent on growth stage and forest structure, but do not appear to be greatly affected by tree species composition. Aims To investigate changes in bird species composition of plantation forests in relation to crop tree species and forest growth stage. Methods We surveyed populations of birds in 44 plantation forests throughout Ireland in the summers of 2001 and 2002. Our study sites represented three combinations of tree species (pure Sitka Spruce Picea sitchensis, pure Ash Fraxinus exelsior, and Sitka Spruce/Ash mixed at inter-stand level) at five ages (4–8 years, 9–17 years, 23–29 years, 35–50 years and 50+ years). We used ordinations and indicator species analyses to explain the influence of growth stage and tree species composition on the bird assemblages of these forests. Results Bird species assemblage is dependent on growth stage. Changes in bird species composition over the commercial forest cycle are related to shrub layer and proximity to the forest edge. The bird assemblages of pre-canopy closure forests are typical of open habitats, some of the constituent bird species being of conservation concern within Ireland. As forests mature, these are replaced by commoner, more generalist species. We found no significant effect of tree species on bird species assemblage. Possible reasons for this include the relatively narrow range of tree species mixtures studied, and the paucity of forest specialist birds in Ireland. Conclusions Forest management for bird diversity in Ireland should promote the shrub layer in and around forest plantations, and ensure that new afforestation does not take place in areas with diverse communities of open-habitat birds. Opportunities for Irish forest plantations to provide habitat for bird forest specialists may be limited.

Mixed infections with tick-borne viruses in a seabird colony in Eire

SummaryViruses were isolated from 2 tick species collected from the nesting areas of seabirds on Great Saltee Island, Eire. Bunyaviruses of the Uukuniemi serogroup were isolated from hard ticks(Ixodes uriae andI. rothschildi), bunyaviruses of the Hughes serogroup from soft ticks(Ornithodoros maritimus), and orbiviruses of the Kemerovo serogroup fromI. uriae andO. maritimus. The results indicate that the bunyaviruses, but not the orbiviruses, show “tick specificity”. Neutralising activity against members of all 3 serogroups was detected in sera from chicks in the nesting areas; neutralising antibodies were probably maternal.

The value of plantation forests for plant, invertebrate and bird diversity and the potential for cross-taxon surrogacy

As the area of plantation forest expands worldwide and natural, unmanaged forests decline there is much interest in the potential for planted forests to provide habitat for biodiversity. In regions where little semi-natural woodland remains, the biodiversity supported by forest plantations, typically non-native conifers, may be particularly important. Few studies provide detailed comparisons between the species diversity of native woodlands which are being depleted and non-native plantation forests, which are now expanding, based on data collected from multiple taxa in the same study sites. Here we compare the species diversity and community composition of plants, invertebrates and birds in Sitka spruce- (Picea sitchensis-) dominated and Norway spruce- (Picea abies-) dominated plantations, which have expanded significantly in recent decades in the study area in Ireland, with that of oak- and ash-dominated semi-natural woodlands in the same area. The results show that species richness in spruce plantations can be as high as semi-natural woodlands, but that the two forest types support different assemblages of species. In areas where non-native conifer plantations are the principle forest type, their role in the provision of habitat for biodiversity conservation should not be overlooked. Appropriate management should target the introduction of semi-natural woodland characteristics, and on the extension of existing semi-natural woodlands to maintain and enhance forest species diversity. Our data show that although some relatively easily surveyed groups, such as vascular plants and birds, were congruent with many of the other taxa when looking across all study sites, the similarities in response were not strong enough to warrant use of these taxa as surrogates of the others. In order to capture a wide range of biotic variation, assessments of forest biodiversity should either encompass several taxonomic groups, or rely on the use of indicators of diversity that are not species based.

A study of the impact of a pipeline construction on estuarine benthic invertebrate communities. Part 2. Recolonization by benthic invertebrates after 1 year and response of estuarine birds

The recovery of a benthic invertebrate community is further assessed, in this follow-up to a before/after impact study, 1 year after a pipeline construction at Clonakilty Bay, West Cork, Ireland. In addition, as the site is important for wintering wading birds, the study investigated the responses of estuarine bird species in the 18 months following the pipeline construction, including two winter periods. The polychaete Hediste diversicolor, having shown a good recovery 6 months after impact, exhibited greater numbers within the impact site after 1 year than existed before the pipeline construction. Their successful recolonization was most likely facilitated by high ragworm abundance in the surrounding areas. Scrobicularia plana, having been absent in samples taken 6 months after construction, showed a recovery after 1 year attributable mainly to settlement of juveniles, but with some evidence of passive or active dispersal by adults. Lower numbers, than the calculated expected number, of wading birds foraged within the impacted area during nearly all months of the first winter following the pipeline construction. The impacted area, however, held greater numbers of diurnally roosting birds than expected, the birds apparently taking advantage of the roughened sediment for shelter or to aid camouflage. The implications of habitat loss for foraging birds are therefore discussed, even when the impact, as in this study, was relatively limited and short term.

A preliminary study on the effects of oyster culturing structures on birds in a sheltered Irish estuary

This study investigated the species composition, numbers and behaviour of birds in an intertidal oyster culture area in Cork Harbour . These data were compared to a nearby area free of aquaculture within the same estuary in March 1999. Species which occurred in the aquaculture free area were also observed in the trestle-area. The most abundant species were oystercatcher Haematopus ostralegus, redshank Tringa totanus, dunlin Calidris alpina, curlew Numenius arquata, black-headed gull Larus ridibundus and common gull Larus canus. Oystercatcher, curlew, black-headed gull and common gull occurred in significantly lower numbers in the trestle area, while for redshank and dunlin the differences were not significant. The percentage of birds feeding did not differ between the two areas. Oystercatcher, redshank, dunlin and curlew mostly fed in both areas. In contrast, black-headed gull and common gull generally did not feed, but surveyed the area. Whether the trestles were covered by oyster bags or not did not have any effect on the number of birds except for the dunlin. Dunlin were significantly more frequent beneath the trestles with bags compared with those without bags. In general, the percentage of birds feeding did not differ between areas. Interspecies differences occurred with regard to the position occupied by birds at the trestles. Oystercatcher, redshank and curlew spent more time underneath the trestles. Dunlin, black-headed gulls and common gulls did not differ in numbers underneath or on top of the trestles. These preliminary observations at a single time period give some insight as to the potential interactions between shellfish aquaculture and intertidal birds.

Breeding bird communities of second‐rotation plantations at different stages of the forest cycle

Capsule Early stages of the plantation forest cycle have distinct bird communities and bird density was significantly higher in the second rotation than in the first for a given age class. Aims To characterize the bird communities in Irish second-rotation plantations and to compare them with those of first-rotation plantations. Methods Point counts were used to survey 20 plantation forests in four age classes (Pre-thicket; Thicket; Mid‐rotation; and Mature) in the breeding season of 2007. distance software was used to generate bird densities. Ordination, indicator species analysis, and glm were used to analyse the bird communities. Results Bird communities of Pre‐thicket and, to a lesser extent, Thicket age classes were distinct from those of more mature forests. Bird communities of Mid‐rotation and Mature age classes were indistinguishable from each other and were therefore combined into a single age class (Closed canopy). Pre‐thicket held significantly lower total bird density, but significantly higher migrant bird density, than this Closed canopy age class. Bird density was significantly higher in the second rotation in all age classes except for Pre‐thicket, but migrant density was significantly higher in Pre‐thicket in the second rotation. There was no difference in species richness between the first and second rotation. Conclusions Differences between rotations are probably due to changes in vegetation structure, and the increase in second‐rotation forests in Ireland is likely to be a positive development for bird communities. Especially encouraging is the higher migrant bird density in second‐rotation Pre‐thicket, as some of these species are in decline throughout Europe. However, the largest differences in population density between rotations were exhibited by common species and such species will likely benefit most from future increases in the area of second‐rotation plantation forests.

A multi-scale problem arising in a model of avian flu virus in a seabird colony

Understanding the dynamics of epidemics of novel pathogens such as the H5N1 strain of avian influenza is of crucial importance to public and veterinary health as well as wildlife ecology. We model the effect of a new virus on a seabird colony, where no pre-existing Herd Immunity exists. The seabirds in question are so-called K-strategists, i.e. they have a relatively long life expectancy and very low reproductive output. They live in isolated colonies which typically contain tens of thousands of birds. These densely populated colonies, with so many birds competing for nesting space, would seem to provide perfect conditions for the entry and spread of an infection. Yet there are relatively few reported cases of epidemics among these seabirds. We develop a SEIR model which incorporates some of the unusual features of seabird population biology and examine the effects of introducing a pathogen into the colony.

Ecological effects of aviation

This chapter describes how the technological equilibrium that existed in the middle of the 19th century was punctuated by a series of momentous discoveries and inventions including oil as a lubricant and fuel, the internal combustion engine, Bell’s telephone and Edison’s electric light bulb. Kerosene and the internal combustion engine were vital contributors to the first powered flight that took place at Kill Devil Hills, North Carolina on December 17, 1903. Orville and Wilbur Wright’s outstanding achievement was quickly followed by a spectacular sequence of inventions in aeronautical engineering, which led to the Concorde and commercial supersonic aviation within 70 years of their inaugural flight. Over this time air transport has become faster, safer, more fuel efficient, less polluting and less noisy. An improving understanding of aerodynamics led to rocketry and ultimately to space exploration and therefore “transport beyond the earth”. Satellite imagery of the Earth is now commonplace and is widely used by science to monitor the global landscape, its biodiversity and a wide range of environmental variables including, in particular, the effects of climate change. This chapter attempts to describe the positive and negative affects of aviation. These impacts occur on different scales that range from the global (aviation’s contribution of global warming gases to the atmosphere) to the local (airfield habitat and wildlife control measures).